Wall clock time and date at job start Sat Apr 11 2020 05:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.46857 * 2 1 4 4 C 1.53005 * 109.46902 * 65.00367 * 3 2 1 5 5 C 1.53005 * 109.46731 * 185.20148 * 4 3 2 6 6 C 1.52998 * 109.46788 * 184.99590 * 3 2 1 7 7 C 1.50704 * 109.46966 * 67.29387 * 6 3 2 8 8 O 1.21284 * 119.99747 * 356.48607 * 7 6 3 9 9 N 1.34781 * 120.00234 * 176.76399 * 7 6 3 10 10 C 1.46927 * 120.62818 * 359.71769 * 9 7 6 11 11 C 1.53193 * 108.77838 * 233.58838 * 10 9 7 12 12 C 1.53043 * 109.31089 * 305.36926 * 11 10 9 13 13 C 1.53037 * 109.53597 * 61.36439 * 12 11 10 14 14 H 1.08996 * 109.50029 * 58.58563 * 13 12 11 15 15 N 1.46901 * 109.49480 * 178.65101 * 13 12 11 16 16 C 1.46897 * 110.99952 * 275.00077 * 15 13 12 17 17 C 1.50703 * 109.47362 * 180.02562 * 16 15 13 18 18 O 1.21298 * 119.99761 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00391 * 180.02562 * 17 16 15 20 20 C 1.37102 * 120.00013 * 179.97438 * 19 17 16 21 21 H 1.07992 * 120.00269 * 0.02562 * 20 19 17 22 22 C 1.38946 * 119.99633 * 179.97438 * 20 19 17 23 23 N 1.31410 * 120.00365 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 120.00003 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47204 * 89.99928 * 24 22 20 26 26 H 1.48494 * 109.47024 * 210.00460 * 24 22 20 27 27 H 1.48495 * 109.46525 * 330.00127 * 24 22 20 28 28 C 1.46919 * 120.62922 * 179.44362 * 9 7 6 29 29 H 1.09003 * 109.46980 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47331 * 299.99642 * 1 2 3 31 31 H 1.08999 * 109.46889 * 60.00057 * 1 2 3 32 32 H 1.09003 * 109.46587 * 239.99876 * 2 1 3 33 33 H 1.08999 * 109.46776 * 120.00722 * 2 1 3 34 34 H 1.08994 * 109.47341 * 304.99867 * 3 2 1 35 35 H 1.08996 * 109.46768 * 305.19804 * 4 3 2 36 36 H 1.08995 * 109.47330 * 65.19909 * 4 3 2 37 37 H 1.08991 * 109.47155 * 54.71569 * 5 4 3 38 38 H 1.09004 * 109.46771 * 174.71260 * 5 4 3 39 39 H 1.08992 * 109.46887 * 294.70922 * 5 4 3 40 40 H 1.08996 * 109.47824 * 307.29209 * 6 3 2 41 41 H 1.09000 * 109.47040 * 187.28601 * 6 3 2 42 42 H 1.09003 * 109.58922 * 353.38095 * 10 9 7 43 43 H 1.09004 * 109.58055 * 113.65566 * 10 9 7 44 44 H 1.08998 * 109.49406 * 65.31633 * 11 10 9 45 45 H 1.08997 * 109.49344 * 185.41402 * 11 10 9 46 46 H 1.09002 * 109.45836 * 181.38618 * 12 11 10 47 47 H 1.08997 * 109.45745 * 301.34317 * 12 11 10 48 48 H 1.00904 * 111.00286 * 151.04185 * 15 13 12 49 49 H 1.09003 * 109.47283 * 299.99561 * 16 15 13 50 50 H 1.08998 * 109.47542 * 59.99838 * 16 15 13 51 51 H 0.96999 * 120.00204 * 359.97438 * 19 17 16 52 52 H 0.97004 * 120.00622 * 179.97438 * 23 22 20 53 53 H 1.08996 * 109.58587 * 246.19434 * 28 9 7 54 54 H 1.08996 * 109.59074 * 6.62547 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6352 2.1264 1.3074 5 6 2.0308 3.6035 1.2539 6 6 3.5648 1.4443 -0.1256 7 6 3.9571 0.9347 -1.4885 8 8 3.1052 0.5429 -2.2578 9 7 5.2552 0.9091 -1.8505 10 6 6.2985 1.3804 -0.9296 11 6 7.1496 2.4335 -1.6461 12 6 7.6843 1.8473 -2.9548 13 6 6.5120 1.4731 -3.8646 14 1 5.9065 2.3580 -4.0604 15 7 7.0266 0.9405 -5.1332 16 6 7.3292 2.0259 -6.0757 17 6 7.8529 1.4424 -7.3627 18 8 7.9636 0.2404 -7.4828 19 7 8.1993 2.2559 -8.3798 20 6 8.6762 1.7250 -9.5504 21 1 8.7739 0.6548 -9.6577 22 6 9.0327 2.5638 -10.5992 23 7 8.9133 3.8659 -10.4689 24 14 9.6818 1.8404 -12.1945 25 1 8.5479 1.5790 -13.1170 26 1 10.6229 2.7998 -12.8262 27 1 10.3907 0.5674 -11.9083 28 6 5.6541 0.4037 -3.1711 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5140 0.8899 34 1 1.6054 1.9815 -0.8418 35 1 0.5568 2.0438 1.4419 36 1 2.1435 1.6442 2.1423 37 1 1.5977 4.0637 0.3659 38 1 1.6596 4.1115 2.1441 39 1 3.1167 3.6875 1.2139 40 1 3.9934 0.7987 0.6409 41 1 3.9388 2.4599 0.0040 42 1 5.8350 1.8231 -0.0480 43 1 6.9270 0.5418 -0.6297 44 1 6.5381 3.3094 -1.8628 45 1 7.9852 2.7214 -1.0081 46 1 8.3104 2.5864 -3.4547 47 1 8.2752 0.9572 -2.7392 48 1 6.3792 0.2805 -5.5376 49 1 6.4219 2.5950 -6.2780 50 1 8.0820 2.6843 -5.6421 51 1 8.1111 3.2171 -8.2837 52 1 9.1625 4.4516 -11.2009 53 1 6.2328 -0.5122 -3.0523 54 1 4.7654 0.2020 -3.7690 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210350373.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:08 Heat of formation + Delta-G solvation = -119.644070 kcal Electronic energy + Delta-G solvation = -29942.006382 eV Core-core repulsion = 25911.574629 eV Total energy + Delta-G solvation = -4030.431753 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.43785 -40.23863 -39.10282 -37.57612 -36.39630 -35.78210 -33.36106 -33.20681 -32.58171 -31.79171 -30.32955 -27.94189 -26.81923 -26.02473 -25.05081 -23.53445 -23.46292 -21.64631 -21.18065 -20.79299 -19.98108 -19.74583 -18.30525 -17.84293 -17.19819 -16.85767 -16.50525 -16.44465 -16.13842 -15.63319 -15.55370 -15.36815 -15.32807 -15.04929 -14.97335 -14.65262 -14.36557 -14.26175 -13.86806 -13.79238 -13.56549 -13.43178 -13.38453 -13.24176 -12.91254 -12.84317 -12.67408 -12.44215 -12.40874 -12.25979 -12.13329 -12.01056 -11.84057 -11.82431 -11.64271 -11.53027 -11.44308 -11.36025 -11.20311 -10.60585 -10.38602 -10.04509 -9.69201 -9.41935 -8.48780 -5.97914 1.36647 1.40522 1.53571 1.64263 1.92640 2.01356 2.28121 2.90079 3.17874 3.40852 3.53984 3.76603 3.82202 3.90713 3.94468 4.04889 4.10130 4.17864 4.24463 4.27726 4.39802 4.42265 4.48204 4.51074 4.52534 4.56862 4.63803 4.66542 4.68427 4.76827 4.78552 4.87138 4.96038 4.98640 4.99956 5.09719 5.13901 5.16874 5.20468 5.29720 5.31993 5.37593 5.39922 5.47887 5.50264 5.57029 5.59825 5.85394 6.05291 6.27867 6.44144 6.56950 7.09735 7.20196 7.52474 8.07631 8.68589 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.020187 B = 0.001843 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.692656 B =15186.813135 C =15553.293749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.070 4.070 4 C -0.115 4.115 5 C -0.157 4.157 6 C -0.129 4.129 7 C 0.505 3.495 8 O -0.583 6.583 9 N -0.610 5.610 10 C 0.101 3.899 11 C -0.127 4.127 12 C -0.109 4.109 13 C 0.081 3.919 14 H 0.040 0.960 15 N -0.672 5.672 16 C 0.069 3.931 17 C 0.438 3.562 18 O -0.622 6.622 19 N -0.572 5.572 20 C -0.335 4.335 21 H 0.079 0.921 22 C -0.014 4.014 23 N -0.920 5.920 24 Si 0.995 3.005 25 H -0.271 1.271 26 H -0.269 1.269 27 H -0.273 1.273 28 C 0.116 3.884 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.038 0.962 32 H 0.049 0.951 33 H 0.069 0.931 34 H 0.051 0.949 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.043 0.957 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.083 0.917 44 H 0.065 0.935 45 H 0.105 0.895 46 H 0.060 0.940 47 H 0.068 0.932 48 H 0.342 0.658 49 H 0.059 0.941 50 H 0.106 0.894 51 H 0.396 0.604 52 H 0.278 0.722 53 H 0.077 0.923 54 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.349 1.816 30.089 31.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.089 4.089 4 C -0.153 4.153 5 C -0.214 4.214 6 C -0.169 4.169 7 C 0.295 3.705 8 O -0.463 6.463 9 N -0.343 5.343 10 C -0.020 4.020 11 C -0.166 4.166 12 C -0.147 4.147 13 C -0.029 4.029 14 H 0.058 0.942 15 N -0.305 5.305 16 C -0.064 4.064 17 C 0.225 3.775 18 O -0.509 6.509 19 N -0.209 5.209 20 C -0.464 4.464 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.560 5.560 24 Si 0.818 3.182 25 H -0.197 1.197 26 H -0.194 1.194 27 H -0.198 1.198 28 C -0.008 4.008 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.062 0.938 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.101 0.899 44 H 0.084 0.916 45 H 0.123 0.877 46 H 0.079 0.921 47 H 0.087 0.913 48 H 0.161 0.839 49 H 0.077 0.923 50 H 0.124 0.876 51 H 0.230 0.770 52 H 0.088 0.912 53 H 0.095 0.905 54 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.027 0.931 29.710 31.370 hybrid contribution -0.604 0.360 -1.852 1.981 sum -10.632 1.291 27.858 29.845 Atomic orbital electron populations 1.21773 0.95812 1.01424 1.01603 1.21644 0.96279 0.96618 1.01674 1.20954 0.93212 0.96321 0.98418 1.21600 1.01760 0.95697 0.96210 1.21861 1.02083 0.95833 1.01609 1.21900 0.97902 1.04421 0.92638 1.21524 0.81258 0.77216 0.90454 1.90673 1.50358 1.49738 1.55566 1.48238 1.06903 1.63249 1.15888 1.22107 0.89431 0.98143 0.92329 1.21921 1.00584 0.98008 0.96061 1.21558 0.96435 1.01396 0.95305 1.21971 0.95575 0.95957 0.89413 0.94179 1.60157 1.50519 1.15565 1.04213 1.21545 1.00920 0.93763 0.90167 1.20806 0.83311 0.87056 0.86329 1.90493 1.60272 1.16670 1.83435 1.41925 1.57224 1.09166 1.12599 1.19675 1.41286 0.93758 0.91726 0.90298 1.26070 0.97267 0.95509 1.02490 1.69671 1.48384 1.03145 1.34844 0.84906 0.78275 0.77966 0.77056 1.19682 1.19365 1.19755 1.21557 0.98203 0.96392 0.84608 0.93009 0.91247 0.94234 0.93274 0.91247 0.93071 0.91531 0.90377 0.93831 0.91985 0.91574 0.86327 0.86510 0.86507 0.89859 0.91596 0.87700 0.92109 0.91310 0.83873 0.92275 0.87591 0.76976 0.91236 0.90501 0.91543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.67 71.98 0.70 -1.63 16 2 C -0.12 -2.09 5.20 30.60 0.16 -1.93 16 3 C -0.07 -1.01 1.49 -10.79 -0.02 -1.02 16 4 C -0.12 -1.06 5.27 30.60 0.16 -0.90 16 5 C -0.16 -1.30 9.55 71.98 0.69 -0.61 16 6 C -0.13 -1.53 3.44 29.85 0.10 -1.42 16 7 C 0.50 10.59 7.43 87.66 0.65 11.24 16 8 O -0.58 -17.76 13.42 -3.04 -0.04 -17.80 16 9 N -0.61 -11.38 2.97 -818.05 -2.43 -13.81 16 10 C 0.10 1.06 6.34 86.36 0.55 1.60 16 11 C -0.13 -1.51 6.08 30.67 0.19 -1.33 16 12 C -0.11 -2.15 5.39 30.62 0.17 -1.98 16 13 C 0.08 2.02 2.66 45.14 0.12 2.14 16 14 H 0.04 1.05 7.80 -2.39 -0.02 1.03 16 15 N -0.67 -22.15 5.93 -494.42 -2.93 -25.08 16 16 C 0.07 2.45 5.97 85.56 0.51 2.96 16 17 C 0.44 21.44 7.82 87.66 0.69 22.13 16 18 O -0.62 -35.40 15.78 -3.09 -0.05 -35.45 16 19 N -0.57 -30.04 5.29 -306.98 -1.62 -31.66 16 20 C -0.33 -19.38 9.68 84.04 0.81 -18.56 16 21 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 22 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 23 N -0.92 -50.15 13.05 21.66 0.28 -49.87 16 24 Si 0.99 43.50 29.55 68.60 2.03 45.52 16 25 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 26 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 27 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 28 C 0.12 2.82 5.73 86.51 0.50 3.31 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 0.83 6.46 -2.39 -0.02 0.82 16 31 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.05 1.16 5.97 -2.39 -0.01 1.15 16 33 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.05 1.02 7.93 -2.39 -0.02 1.00 16 35 H 0.07 0.65 6.34 -2.39 -0.02 0.63 16 36 H 0.08 0.50 8.14 -2.39 -0.02 0.49 16 37 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.07 0.40 6.68 -2.39 -0.02 0.38 16 40 H 0.12 0.83 8.06 -2.39 -0.02 0.81 16 41 H 0.12 0.87 5.75 -2.39 -0.01 0.86 16 42 H 0.12 0.50 5.91 -2.39 -0.01 0.48 16 43 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 44 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.06 1.30 7.43 -2.39 -0.02 1.28 16 47 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 48 H 0.34 12.21 8.07 -89.69 -0.72 11.49 16 49 H 0.06 1.95 8.06 -2.39 -0.02 1.93 16 50 H 0.11 3.39 7.42 -2.39 -0.02 3.37 16 51 H 0.40 19.73 7.90 -92.71 -0.73 19.00 16 52 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 53 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 54 H 0.07 1.95 7.00 -2.39 -0.02 1.93 16 Total: -1.00 -74.37 416.33 1.11 -73.25 By element: Atomic # 1 Polarization: 41.73 SS G_CDS: -0.56 Total: 41.17 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: 6.43 Total: 13.73 kcal Atomic # 7 Polarization: -113.72 SS G_CDS: -6.70 Total: -120.42 kcal Atomic # 8 Polarization: -53.16 SS G_CDS: -0.09 Total: -53.25 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -74.37 1.11 -73.25 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210350373.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.392 kcal (2) G-P(sol) polarization free energy of solvation -74.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds