Wall clock time and date at job start Sat Apr 11 2020 05:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46867 * 2 1 4 4 C 1.53004 * 109.46585 * 301.54421 * 3 2 1 5 5 C 1.52999 * 109.47331 * 294.97682 * 4 3 2 6 6 C 1.52997 * 109.47457 * 61.54578 * 3 2 1 7 7 C 1.50697 * 109.46834 * 64.99926 * 6 3 2 8 8 O 1.21279 * 120.00569 * 0.02562 * 7 6 3 9 9 N 1.34784 * 119.99699 * 179.97438 * 7 6 3 10 10 C 1.47479 * 127.03281 * 0.02648 * 9 7 6 11 11 C 1.54006 * 107.08391 * 154.51900 * 10 9 7 12 12 H 1.08996 * 110.33056 * 120.19389 * 11 10 9 13 13 C 1.53002 * 110.32823 * 242.41412 * 11 10 9 14 14 C 1.54622 * 105.04533 * 1.30158 * 11 10 9 15 15 H 1.08997 * 110.74045 * 263.51788 * 14 11 10 16 16 N 1.46895 * 110.73933 * 140.36762 * 14 11 10 17 17 C 1.46902 * 110.99797 * 155.00457 * 16 14 11 18 18 C 1.50704 * 109.47195 * 180.02562 * 17 16 14 19 19 O 1.21297 * 119.99639 * 359.97438 * 18 17 16 20 20 N 1.34774 * 120.00273 * 180.02562 * 18 17 16 21 21 C 1.37102 * 120.00013 * 180.02562 * 20 18 17 22 22 H 1.07996 * 119.99732 * 0.02562 * 21 20 18 23 23 C 1.38950 * 119.99581 * 179.97438 * 21 20 18 24 24 N 1.31416 * 119.99661 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 120.00174 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.46763 * 90.00087 * 25 23 21 27 27 H 1.48500 * 109.46797 * 209.99765 * 25 23 21 28 28 H 1.48497 * 109.47173 * 329.99979 * 25 23 21 29 29 C 1.48119 * 127.03311 * 179.70981 * 9 7 6 30 30 H 1.09011 * 109.47048 * 181.88891 * 1 2 3 31 31 H 1.08996 * 109.47436 * 301.89222 * 1 2 3 32 32 H 1.08998 * 109.47047 * 61.89308 * 1 2 3 33 33 H 1.08991 * 109.47522 * 239.99504 * 2 1 3 34 34 H 1.09001 * 109.46492 * 119.99246 * 2 1 3 35 35 H 1.09001 * 109.46812 * 181.54802 * 3 2 1 36 36 H 1.08996 * 109.46933 * 54.98789 * 4 3 2 37 37 H 1.09007 * 109.46315 * 174.98062 * 4 3 2 38 38 H 1.08998 * 109.46942 * 185.79791 * 5 4 3 39 39 H 1.09002 * 109.47191 * 305.80217 * 5 4 3 40 40 H 1.08998 * 109.46542 * 65.80328 * 5 4 3 41 41 H 1.09000 * 109.46854 * 305.00216 * 6 3 2 42 42 H 1.08999 * 109.47179 * 185.00152 * 6 3 2 43 43 H 1.09004 * 109.91382 * 273.87113 * 10 9 7 44 44 H 1.09000 * 109.91517 * 34.96675 * 10 9 7 45 45 H 1.09008 * 109.47239 * 58.53867 * 13 11 10 46 46 H 1.08993 * 109.47590 * 178.54363 * 13 11 10 47 47 H 1.09004 * 109.46827 * 298.54788 * 13 11 10 48 48 H 1.00898 * 111.00325 * 31.04960 * 16 14 11 49 49 H 1.09006 * 109.47039 * 299.99697 * 17 16 14 50 50 H 1.08996 * 109.47406 * 60.00059 * 17 16 14 51 51 H 0.96995 * 119.99722 * 359.97438 * 20 18 17 52 52 H 0.96994 * 119.99802 * 179.97438 * 24 23 21 53 53 H 1.09007 * 110.65840 * 337.77073 * 29 9 7 54 54 H 1.09005 * 110.66067 * 100.88574 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4983 2.1748 -1.2294 5 6 2.0769 1.5415 -2.4963 6 6 1.5620 2.1525 1.2682 7 6 2.1939 1.5063 2.4740 8 8 2.9522 0.5704 2.3331 9 7 1.9170 1.9691 3.7093 10 6 1.0246 3.0901 4.0584 11 6 0.5274 2.8422 5.4948 12 1 0.8212 3.6663 6.1448 13 6 -0.9927 2.6686 5.5086 14 6 1.2213 1.5339 5.9395 15 1 0.5632 0.6780 5.7905 16 7 1.6475 1.6220 7.3425 17 6 1.7488 0.2869 7.9468 18 6 2.1867 0.4173 9.3829 19 8 2.3946 1.5146 9.8562 20 7 2.3485 -0.6852 10.1409 21 6 2.7464 -0.5665 11.4475 22 1 2.9299 0.4106 11.8694 23 6 2.9126 -1.7032 12.2291 24 7 3.2945 -1.5894 13.4814 25 14 2.5932 -3.3931 11.4999 26 1 3.8475 -3.9208 10.9056 27 1 2.1263 -4.3129 12.5681 28 1 1.5518 -3.2888 10.4463 29 6 2.4418 1.4518 4.9941 30 1 -0.3634 -1.0272 0.0339 31 1 -0.3634 0.5429 0.8725 32 1 -0.3633 0.4841 -0.9065 33 1 1.8934 -0.5139 -0.8898 34 1 1.8932 -0.5137 0.8901 35 1 3.1296 1.4427 -0.0278 36 1 0.4113 2.0979 -1.2485 37 1 1.7875 3.2248 -1.1835 38 1 1.7740 2.1254 -3.3654 39 1 3.1648 1.5256 -2.4304 40 1 1.7040 0.5221 -2.5957 41 1 0.4772 2.0750 1.3410 42 1 1.8492 3.2032 1.2266 43 1 1.5742 4.0303 4.0131 44 1 0.1798 3.1204 3.3702 45 1 -1.2689 1.8334 4.8649 46 1 -1.3263 2.4685 6.5267 47 1 -1.4657 3.5803 5.1438 48 1 1.0251 2.2129 7.8731 49 1 0.7766 -0.2046 7.9070 50 1 2.4787 -0.3067 7.3964 51 1 2.1826 -1.5627 9.7622 52 1 3.4102 -2.3829 14.0271 53 1 2.7747 0.4195 4.8859 54 1 3.2524 2.0821 5.3602 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216086213.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:40 Heat of formation + Delta-G solvation = -107.582246 kcal Electronic energy + Delta-G solvation = -30064.879588 eV Core-core repulsion = 26034.970876 eV Total energy + Delta-G solvation = -4029.908713 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.37292 -40.35610 -39.44187 -37.73529 -36.24925 -35.59223 -33.77782 -33.38873 -32.10857 -31.36216 -29.86136 -28.03447 -27.35048 -26.09787 -25.32016 -24.30087 -23.02728 -21.49934 -21.16661 -20.59786 -20.20154 -19.61667 -18.14253 -17.75204 -17.38511 -16.93713 -16.75100 -16.52011 -16.28683 -16.00685 -15.70017 -15.29219 -15.00371 -14.88922 -14.60740 -14.52289 -14.29911 -14.15985 -14.00542 -13.82381 -13.65594 -13.59502 -13.48261 -13.03596 -12.91053 -12.83663 -12.80812 -12.72891 -12.42930 -12.25687 -12.06581 -11.99380 -11.93120 -11.92103 -11.58651 -11.53475 -11.39724 -11.33920 -11.20501 -10.65708 -10.45694 -10.26433 -9.74665 -9.39476 -8.42895 -6.03608 1.28412 1.33991 1.42251 1.65501 1.91666 1.92760 2.21005 2.70512 3.13274 3.31548 3.39856 3.61907 3.78973 3.82581 3.93484 3.98967 4.10760 4.19933 4.28019 4.30917 4.40111 4.41320 4.45676 4.49225 4.52958 4.58555 4.60859 4.65187 4.71109 4.76610 4.81150 4.90013 4.91278 4.96651 5.00004 5.02566 5.11054 5.12217 5.17690 5.26540 5.34608 5.36103 5.38078 5.41988 5.51217 5.51961 5.69529 5.88981 6.01458 6.33745 6.57501 6.59383 6.86020 7.18673 7.37602 7.93280 8.74563 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017625 B = 0.002044 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.251934 B =13693.813636 C =14525.771816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.070 4.070 4 C -0.116 4.116 5 C -0.154 4.154 6 C -0.127 4.127 7 C 0.524 3.476 8 O -0.583 6.583 9 N -0.622 5.622 10 C 0.108 3.892 11 C -0.105 4.105 12 H 0.095 0.905 13 C -0.141 4.141 14 C 0.083 3.917 15 H 0.066 0.934 16 N -0.670 5.670 17 C 0.061 3.939 18 C 0.450 3.550 19 O -0.611 6.611 20 N -0.591 5.591 21 C -0.328 4.328 22 H 0.057 0.943 23 C -0.014 4.014 24 N -0.932 5.932 25 Si 0.962 3.038 26 H -0.260 1.260 27 H -0.273 1.273 28 H -0.232 1.232 29 C 0.112 3.888 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.048 0.952 35 H 0.053 0.947 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.045 0.955 40 H 0.053 0.947 41 H 0.118 0.882 42 H 0.113 0.887 43 H 0.083 0.917 44 H 0.105 0.895 45 H 0.060 0.940 46 H 0.052 0.948 47 H 0.081 0.919 48 H 0.354 0.646 49 H 0.078 0.922 50 H 0.105 0.895 51 H 0.389 0.611 52 H 0.279 0.721 53 H 0.061 0.939 54 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.416 6.811 -33.324 36.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.089 4.089 4 C -0.153 4.153 5 C -0.212 4.212 6 C -0.166 4.166 7 C 0.315 3.685 8 O -0.463 6.463 9 N -0.356 5.356 10 C -0.014 4.014 11 C -0.124 4.124 12 H 0.113 0.887 13 C -0.198 4.198 14 C -0.028 4.028 15 H 0.084 0.916 16 N -0.304 5.304 17 C -0.071 4.071 18 C 0.238 3.762 19 O -0.495 6.495 20 N -0.233 5.233 21 C -0.458 4.458 22 H 0.076 0.924 23 C -0.212 4.212 24 N -0.573 5.573 25 Si 0.782 3.218 26 H -0.184 1.184 27 H -0.198 1.198 28 H -0.155 1.155 29 C -0.012 4.012 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.136 0.864 42 H 0.131 0.869 43 H 0.101 0.899 44 H 0.123 0.877 45 H 0.079 0.921 46 H 0.071 0.929 47 H 0.100 0.900 48 H 0.175 0.825 49 H 0.096 0.904 50 H 0.123 0.877 51 H 0.224 0.776 52 H 0.089 0.911 53 H 0.079 0.921 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.149 6.986 -33.136 35.652 hybrid contribution -0.267 -1.398 0.941 1.707 sum -11.416 5.587 -32.195 34.613 Atomic orbital electron populations 1.21873 0.94975 1.01552 1.02398 1.21619 0.96651 0.96595 1.01551 1.20925 0.99635 0.94914 0.93425 1.21608 1.01456 0.99399 0.92871 1.21800 1.00587 1.01053 0.97711 1.21854 1.02940 1.01455 0.90360 1.21108 0.80888 0.82715 0.83791 1.90672 1.38916 1.30809 1.85912 1.48902 1.47058 1.34601 1.05067 1.22375 0.94124 0.89107 0.95822 1.22281 0.96788 0.96918 0.96412 0.88678 1.21861 0.92628 1.03126 1.02209 1.22583 0.94482 0.98686 0.87055 0.91618 1.59929 1.57247 1.11249 1.02001 1.21679 1.02225 0.92711 0.90480 1.20880 0.82187 0.84015 0.89112 1.90544 1.55876 1.27802 1.75278 1.42046 1.62492 1.08034 1.10722 1.19016 1.44479 0.95319 0.86949 0.92441 1.26083 0.96234 1.03373 0.95548 1.69798 1.46942 1.32101 1.08459 0.85401 0.80181 0.76846 0.79337 1.18443 1.19834 1.15543 1.22279 0.96767 0.99513 0.82651 0.93449 0.92479 0.90975 0.92284 0.93333 0.92865 0.90199 0.91026 0.91836 0.93611 0.92821 0.86447 0.86853 0.89917 0.87682 0.92124 0.92924 0.89987 0.82534 0.90377 0.87741 0.77586 0.91127 0.92083 0.91297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.21 71.98 0.66 -1.14 16 2 C -0.13 -2.10 5.19 30.59 0.16 -1.94 16 3 C -0.07 -0.99 1.81 -10.79 -0.02 -1.01 16 4 C -0.12 -1.04 5.15 30.60 0.16 -0.88 16 5 C -0.15 -1.52 9.52 71.98 0.69 -0.84 16 6 C -0.13 -1.53 4.06 29.85 0.12 -1.41 16 7 C 0.52 11.06 7.60 87.66 0.67 11.73 16 8 O -0.58 -17.67 14.18 -3.03 -0.04 -17.72 16 9 N -0.62 -11.80 3.29 -810.06 -2.67 -14.47 16 10 C 0.11 1.25 6.42 86.53 0.56 1.81 16 11 C -0.10 -1.47 3.08 -9.90 -0.03 -1.51 16 12 H 0.09 1.46 7.94 -2.39 -0.02 1.44 16 13 C -0.14 -1.49 8.90 71.98 0.64 -0.85 16 14 C 0.08 1.69 2.92 46.01 0.13 1.83 16 15 H 0.07 1.29 7.54 -2.39 -0.02 1.28 16 16 N -0.67 -18.67 5.98 -489.92 -2.93 -21.60 16 17 C 0.06 1.88 6.03 85.56 0.52 2.40 16 18 C 0.45 20.26 7.82 87.66 0.69 20.95 16 19 O -0.61 -33.46 15.78 -3.08 -0.05 -33.51 16 20 N -0.59 -28.10 5.09 -306.98 -1.56 -29.66 16 21 C -0.33 -19.34 10.16 84.04 0.85 -18.49 16 22 H 0.06 4.01 7.39 -2.91 -0.02 3.99 16 23 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 24 N -0.93 -56.45 13.96 21.66 0.30 -56.15 16 25 Si 0.96 39.33 27.74 68.60 1.90 41.24 16 26 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 27 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 28 H -0.23 -8.00 6.52 99.48 0.65 -7.36 16 29 C 0.11 2.65 6.76 86.61 0.59 3.23 16 30 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.06 0.62 6.27 -2.39 -0.01 0.60 16 32 H 0.07 0.63 6.39 -2.39 -0.02 0.61 16 33 H 0.06 0.96 6.77 -2.39 -0.02 0.94 16 34 H 0.05 1.14 5.93 -2.39 -0.01 1.13 16 35 H 0.05 1.01 7.95 -2.39 -0.02 0.99 16 36 H 0.08 0.53 6.17 -2.39 -0.01 0.52 16 37 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 38 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.05 0.56 6.89 -2.39 -0.02 0.54 16 41 H 0.12 0.91 5.95 -2.39 -0.01 0.89 16 42 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.11 0.63 7.08 -2.39 -0.02 0.61 16 45 H 0.06 0.61 8.13 -2.38 -0.02 0.59 16 46 H 0.05 0.67 8.14 -2.39 -0.02 0.66 16 47 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 48 H 0.35 10.10 8.03 -89.70 -0.72 9.38 16 49 H 0.08 1.95 8.08 -2.38 -0.02 1.93 16 50 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 51 H 0.39 15.44 5.76 -92.71 -0.53 14.91 16 52 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 53 H 0.06 1.67 7.85 -2.38 -0.02 1.65 16 54 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 Total: -1.00 -80.51 416.76 1.38 -79.13 By element: Atomic # 1 Polarization: 39.55 SS G_CDS: -0.41 Total: 39.13 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: 6.84 Total: 13.59 kcal Atomic # 7 Polarization: -115.02 SS G_CDS: -6.86 Total: -121.88 kcal Atomic # 8 Polarization: -51.13 SS G_CDS: -0.09 Total: -51.22 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 1.90 Total: 41.24 kcal Total: -80.51 1.38 -79.13 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216086213.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.447 kcal (2) G-P(sol) polarization free energy of solvation -80.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds