Wall clock time and date at job start Sat Apr 11 2020 05:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52997 * 109.47482 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.46886 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47291 * 179.97438 * 6 5 4 8 8 O 1.21288 * 120.00038 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00369 * 179.97438 * 7 6 5 10 10 C 1.47484 * 127.03062 * 0.02562 * 9 7 6 11 11 C 1.54002 * 107.08045 * 154.51941 * 10 9 7 12 12 H 1.09003 * 110.32923 * 120.19847 * 11 10 9 13 13 C 1.53009 * 110.32209 * 242.40889 * 11 10 9 14 14 C 1.54614 * 105.04928 * 1.30442 * 11 10 9 15 15 H 1.09000 * 110.73584 * 263.51884 * 14 11 10 16 16 N 1.46892 * 110.74361 * 140.36921 * 14 11 10 17 17 C 1.46901 * 111.00286 * 154.99810 * 16 14 11 18 18 C 1.50694 * 109.47189 * 180.02562 * 17 16 14 19 19 O 1.21297 * 120.00253 * 359.97438 * 18 17 16 20 20 N 1.34776 * 120.00032 * 180.02562 * 18 17 16 21 21 C 1.37095 * 120.00435 * 179.97438 * 20 18 17 22 22 H 1.08002 * 120.00013 * 359.97438 * 21 20 18 23 23 C 1.38948 * 120.00462 * 179.97438 * 21 20 18 24 24 N 1.31416 * 119.99989 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 120.00263 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47049 * 90.00208 * 25 23 21 27 27 H 1.48493 * 109.47185 * 210.00261 * 25 23 21 28 28 H 1.48500 * 109.46719 * 330.00674 * 25 23 21 29 29 C 1.48114 * 127.03327 * 179.71120 * 9 7 6 30 30 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47153 * 300.00216 * 1 2 3 32 32 H 1.09001 * 109.47289 * 60.00300 * 1 2 3 33 33 H 1.09002 * 109.47153 * 239.99783 * 2 1 3 34 34 H 1.09001 * 109.46832 * 119.99974 * 2 1 3 35 35 H 1.09002 * 109.47103 * 59.99753 * 3 2 1 36 36 H 1.08998 * 109.46862 * 300.00565 * 3 2 1 37 37 H 1.09002 * 109.47153 * 59.99783 * 4 3 2 38 38 H 1.09001 * 109.46832 * 299.99974 * 4 3 2 39 39 H 1.09001 * 109.47194 * 299.99650 * 5 4 3 40 40 H 1.08992 * 109.47399 * 59.99823 * 5 4 3 41 41 H 1.09001 * 109.47109 * 299.99380 * 6 5 4 42 42 H 1.09002 * 109.47508 * 59.99571 * 6 5 4 43 43 H 1.09000 * 109.91216 * 273.87648 * 10 9 7 44 44 H 1.08993 * 109.91517 * 34.96167 * 10 9 7 45 45 H 1.09000 * 109.46898 * 58.55328 * 13 11 10 46 46 H 1.09000 * 109.46722 * 178.54672 * 13 11 10 47 47 H 1.08996 * 109.47179 * 298.54864 * 13 11 10 48 48 H 1.00908 * 111.00066 * 31.04580 * 16 14 11 49 49 H 1.09001 * 109.46978 * 300.00307 * 17 16 14 50 50 H 1.09002 * 109.46678 * 60.00269 * 17 16 14 51 51 H 0.97006 * 120.00177 * 359.97438 * 20 18 17 52 52 H 0.96993 * 119.99851 * 179.97438 * 24 23 21 53 53 H 1.09000 * 110.66511 * 337.76420 * 29 9 7 54 54 H 1.08995 * 110.66554 * 100.88875 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8849 0.0013 6 6 5.6100 2.8849 0.0013 7 6 6.1124 4.3056 0.0013 8 8 5.3243 5.2275 0.0008 9 7 7.4375 4.5519 0.0018 10 6 8.5259 3.5566 0.0019 11 6 9.7567 4.2323 -0.6308 12 1 10.5862 4.2464 0.0762 13 6 10.1625 3.5033 -1.9134 14 6 9.3015 5.6742 -0.9536 15 1 8.9864 5.7557 -1.9938 16 7 10.3722 6.6359 -0.6594 17 6 10.2221 7.8542 -1.4665 18 6 11.3361 8.8145 -1.1385 19 8 12.1727 8.5139 -0.3132 20 7 11.4024 10.0078 -1.7614 21 6 12.4156 10.8817 -1.4627 22 1 13.1605 10.6141 -0.7279 23 6 12.4842 12.1118 -2.1053 24 7 11.5776 12.4377 -2.9991 25 14 13.8644 13.3028 -1.6977 26 1 15.0191 13.0487 -2.5963 27 1 13.3875 14.6964 -1.8867 28 1 14.2838 13.1101 -0.2863 29 6 8.0985 5.8773 -0.0041 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 1.9562 -0.8899 37 1 3.9337 0.9284 -0.8891 38 1 3.9329 0.9287 0.8909 39 1 3.7171 3.3990 -0.8887 40 1 3.7163 3.3985 0.8912 41 1 5.9733 2.3707 0.8911 42 1 5.9734 2.3713 -0.8889 43 1 8.7527 3.2547 1.0244 44 1 8.2333 2.6865 -0.5857 45 1 9.3277 3.5092 -2.6143 46 1 11.0178 4.0077 -2.3629 47 1 10.4309 2.4737 -1.6767 48 1 11.2807 6.2195 -0.7989 49 1 10.2647 7.5964 -2.5247 50 1 9.2624 8.3209 -1.2445 51 1 10.7332 10.2484 -2.4212 52 1 11.6253 13.2965 -3.4474 53 1 7.4258 6.6409 -0.3948 54 1 8.4412 6.1407 0.9965 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001216659773.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:43 Heat of formation + Delta-G solvation = -124.138453 kcal Electronic energy + Delta-G solvation = -28860.103810 eV Core-core repulsion = 24829.477166 eV Total energy + Delta-G solvation = -4030.626644 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.26784 -40.17930 -39.15710 -37.22576 -36.22436 -35.56141 -34.27002 -33.45591 -33.20661 -30.87161 -29.62626 -27.92612 -27.35331 -26.15463 -25.27783 -23.18693 -22.12168 -21.83417 -21.43278 -20.97115 -20.18079 -19.85789 -18.16912 -17.74401 -17.37904 -16.97078 -16.75224 -16.49900 -16.27039 -16.02370 -15.70891 -15.22801 -15.09738 -14.89161 -14.73750 -14.48507 -14.30004 -14.07082 -13.92883 -13.70869 -13.52976 -13.48103 -13.36828 -13.26543 -12.98722 -12.89832 -12.74684 -12.42785 -12.30668 -12.30191 -12.13503 -12.04520 -11.92384 -11.77141 -11.61361 -11.58419 -11.51394 -11.46736 -11.31640 -10.86832 -10.36760 -10.03095 -9.78594 -9.40496 -8.47589 -5.96748 1.37543 1.41500 1.54492 1.61191 1.89372 2.02860 2.28650 2.89255 3.19589 3.32662 3.48330 3.60581 3.76884 3.84753 3.95305 4.02361 4.20548 4.22647 4.24125 4.29245 4.32083 4.35938 4.45084 4.48883 4.53530 4.56630 4.58222 4.65968 4.75534 4.77574 4.83928 4.86652 4.90293 4.92842 4.96712 5.03169 5.09959 5.12283 5.15802 5.24336 5.25311 5.29735 5.37918 5.40317 5.42936 5.50771 5.56567 5.87126 6.06637 6.35274 6.56234 6.57964 7.10965 7.13208 7.54139 8.08694 8.69814 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.023101 B = 0.001556 C = 0.001490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.802441 B =17995.741684 C =18786.125947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.123 4.123 3 C -0.123 4.123 4 C -0.111 4.111 5 C -0.103 4.103 6 C -0.124 4.124 7 C 0.520 3.480 8 O -0.595 6.595 9 N -0.622 5.622 10 C 0.108 3.892 11 C -0.104 4.104 12 H 0.098 0.902 13 C -0.141 4.141 14 C 0.081 3.919 15 H 0.061 0.939 16 N -0.666 5.666 17 C 0.065 3.935 18 C 0.439 3.561 19 O -0.620 6.620 20 N -0.573 5.573 21 C -0.335 4.335 22 H 0.081 0.919 23 C -0.012 4.012 24 N -0.921 5.921 25 Si 0.994 3.006 26 H -0.269 1.269 27 H -0.272 1.272 28 H -0.272 1.272 29 C 0.111 3.889 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.050 0.950 40 H 0.049 0.951 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.086 0.914 44 H 0.108 0.892 45 H 0.058 0.942 46 H 0.051 0.949 47 H 0.084 0.916 48 H 0.354 0.646 49 H 0.068 0.932 50 H 0.094 0.906 51 H 0.395 0.605 52 H 0.278 0.722 53 H 0.056 0.944 54 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.940 -28.839 1.898 32.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.160 4.160 3 C -0.161 4.161 4 C -0.148 4.148 5 C -0.142 4.142 6 C -0.163 4.163 7 C 0.312 3.688 8 O -0.476 6.476 9 N -0.355 5.355 10 C -0.014 4.014 11 C -0.123 4.123 12 H 0.116 0.884 13 C -0.198 4.198 14 C -0.030 4.030 15 H 0.079 0.921 16 N -0.300 5.300 17 C -0.068 4.068 18 C 0.227 3.773 19 O -0.506 6.506 20 N -0.210 5.210 21 C -0.465 4.465 22 H 0.099 0.901 23 C -0.212 4.212 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.194 1.194 27 H -0.197 1.197 28 H -0.197 1.197 29 C -0.013 4.013 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.135 0.865 42 H 0.137 0.863 43 H 0.104 0.896 44 H 0.126 0.874 45 H 0.077 0.923 46 H 0.070 0.930 47 H 0.103 0.897 48 H 0.175 0.825 49 H 0.086 0.914 50 H 0.112 0.888 51 H 0.229 0.771 52 H 0.087 0.913 53 H 0.075 0.925 54 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.239 -28.153 2.876 32.141 hybrid contribution 0.503 1.313 -1.027 1.741 sum -14.736 -26.840 1.849 30.675 Atomic orbital electron populations 1.21805 0.96078 1.01847 1.01625 1.21520 0.95776 0.96335 1.02373 1.21627 0.95721 0.97153 1.01605 1.21558 0.95170 0.94922 1.03179 1.21323 0.93246 0.97726 1.01856 1.21715 0.97294 0.90730 1.06606 1.21285 0.79857 0.93129 0.74574 1.90702 1.55544 1.48729 1.52602 1.48908 1.05344 1.08702 1.72583 1.22405 0.84702 0.91717 1.02549 1.22288 0.98342 0.92276 0.99420 0.88421 1.21864 1.01375 1.01199 0.95393 1.22586 0.91231 0.91936 0.97225 0.92110 1.59940 1.06449 1.05254 1.58335 1.21575 0.97277 0.91282 0.96630 1.20765 0.88665 0.83760 0.84160 1.90488 1.44603 1.77796 1.37762 1.41940 1.26563 1.14642 1.37843 1.19693 1.06473 0.97331 1.22954 0.90134 1.26058 1.00586 0.98992 0.95583 1.69679 1.35755 1.24138 1.26614 0.84918 0.77647 0.77072 0.78650 1.19432 1.19667 1.19721 1.22276 0.93088 0.85700 1.00206 0.92231 0.93039 0.93032 0.91590 0.91602 0.92726 0.92704 0.90675 0.90726 0.93127 0.93170 0.86455 0.86322 0.89583 0.87431 0.92285 0.93025 0.89713 0.82544 0.91409 0.88778 0.77083 0.91309 0.92506 0.91055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.91 71.98 0.71 -0.74 16 2 C -0.12 -1.11 5.93 30.59 0.18 -0.93 16 3 C -0.12 -1.38 5.21 30.59 0.16 -1.22 16 4 C -0.11 -1.07 5.21 30.59 0.16 -0.91 16 5 C -0.10 -1.56 4.50 30.59 0.14 -1.42 16 6 C -0.12 -1.57 4.78 29.85 0.14 -1.43 16 7 C 0.52 11.98 7.89 87.66 0.69 12.67 16 8 O -0.59 -19.88 16.19 -3.05 -0.05 -19.93 16 9 N -0.62 -12.89 3.29 -810.10 -2.67 -15.55 16 10 C 0.11 1.35 6.42 86.53 0.56 1.91 16 11 C -0.10 -1.60 3.08 -9.90 -0.03 -1.63 16 12 H 0.10 1.57 7.94 -2.39 -0.02 1.55 16 13 C -0.14 -1.68 8.90 71.99 0.64 -1.04 16 14 C 0.08 1.86 2.92 46.01 0.13 2.00 16 15 H 0.06 1.40 7.54 -2.39 -0.02 1.38 16 16 N -0.67 -20.17 5.98 -489.95 -2.93 -23.10 16 17 C 0.06 2.25 6.03 85.55 0.52 2.77 16 18 C 0.44 20.97 7.82 87.66 0.69 21.65 16 19 O -0.62 -34.09 15.78 -3.08 -0.05 -34.14 16 20 N -0.57 -29.75 5.29 -306.99 -1.62 -31.37 16 21 C -0.34 -19.18 9.68 84.04 0.81 -18.36 16 22 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 23 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 24 N -0.92 -50.29 13.05 21.66 0.28 -50.01 16 25 Si 0.99 43.18 29.55 68.60 2.03 45.21 16 26 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 27 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 28 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 29 C 0.11 2.90 6.76 86.61 0.59 3.49 16 30 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.05 0.95 8.10 -2.39 -0.02 0.93 16 40 H 0.05 0.95 8.10 -2.39 -0.02 0.93 16 41 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.12 0.90 7.91 -2.39 -0.02 0.88 16 43 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.11 0.71 7.08 -2.39 -0.02 0.69 16 45 H 0.06 0.69 8.13 -2.39 -0.02 0.68 16 46 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.35 10.76 8.03 -89.69 -0.72 10.04 16 49 H 0.07 2.06 8.08 -2.39 -0.02 2.05 16 50 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 51 H 0.40 19.66 7.90 -92.70 -0.73 18.93 16 52 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 53 H 0.06 1.74 7.85 -2.39 -0.02 1.72 16 54 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -74.31 435.28 0.96 -73.35 By element: Atomic # 1 Polarization: 39.52 SS G_CDS: -0.58 Total: 38.94 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: 6.55 Total: 16.60 kcal Atomic # 7 Polarization: -113.10 SS G_CDS: -6.94 Total: -120.04 kcal Atomic # 8 Polarization: -53.97 SS G_CDS: -0.10 Total: -54.06 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -74.31 0.96 -73.35 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001216659773.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.784 kcal (2) G-P(sol) polarization free energy of solvation -74.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds