Wall clock time and date at job start Sat Apr 11 2020 05:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46751 * 2 1 4 4 C 1.52997 * 109.47050 * 119.99640 * 2 1 3 5 5 C 1.53001 * 109.46962 * 78.15138 * 4 2 1 6 6 C 1.53001 * 109.47033 * 60.14924 * 5 4 2 7 7 C 1.52995 * 109.47513 * 300.14924 * 5 4 2 8 8 C 1.50697 * 109.47240 * 180.14532 * 5 4 2 9 9 O 1.21283 * 120.00128 * 0.02562 * 8 5 4 10 10 N 1.34778 * 120.00278 * 180.02562 * 8 5 4 11 11 C 1.46501 * 120.00061 * 180.02562 * 10 8 5 12 12 C 1.53001 * 109.47023 * 179.97438 * 11 10 8 13 13 C 1.53514 * 114.16858 * 174.99853 * 12 11 10 14 14 N 1.47483 * 87.93324 * 139.67316 * 13 12 11 15 15 C 1.46891 * 110.99855 * 221.29730 * 14 13 12 16 16 C 1.50701 * 109.46974 * 169.99712 * 15 14 13 17 17 O 1.21296 * 119.99975 * 359.97438 * 16 15 14 18 18 N 1.34780 * 120.00150 * 179.97438 * 16 15 14 19 19 C 1.37092 * 120.00042 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00257 * 359.97438 * 19 18 16 21 21 C 1.38958 * 119.99834 * 180.02562 * 19 18 16 22 22 N 1.31408 * 119.99814 * 179.97438 * 21 19 18 23 23 Si 1.86794 * 120.00064 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46959 * 90.00404 * 23 21 19 25 25 H 1.48496 * 109.47202 * 210.00133 * 23 21 19 26 26 H 1.48503 * 109.47323 * 330.00684 * 23 21 19 27 27 C 1.47482 * 87.83314 * 332.98926 * 14 13 12 28 28 H 1.09002 * 109.47294 * 47.68675 * 1 2 3 29 29 H 1.09009 * 109.46991 * 167.69124 * 1 2 3 30 30 H 1.08999 * 109.47269 * 287.68493 * 1 2 3 31 31 H 1.08992 * 109.47078 * 239.99774 * 2 1 3 32 32 H 1.08998 * 109.46908 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.46610 * 300.00092 * 3 2 1 34 34 H 1.08999 * 109.47138 * 59.99895 * 3 2 1 35 35 H 1.09003 * 109.47545 * 318.15246 * 4 2 1 36 36 H 1.08999 * 109.46915 * 198.14644 * 4 2 1 37 37 H 1.09006 * 109.46955 * 179.97438 * 6 5 4 38 38 H 1.08994 * 109.47179 * 300.00068 * 6 5 4 39 39 H 1.08997 * 109.47329 * 60.00104 * 6 5 4 40 40 H 1.09011 * 109.46895 * 322.21962 * 7 5 4 41 41 H 1.09003 * 109.47583 * 82.21505 * 7 5 4 42 42 H 1.08997 * 109.47440 * 202.22349 * 7 5 4 43 43 H 0.96997 * 120.00140 * 0.02562 * 10 8 5 44 44 H 1.08996 * 109.47375 * 59.99799 * 11 10 8 45 45 H 1.09000 * 109.47011 * 300.00148 * 11 10 8 46 46 H 1.09001 * 113.25653 * 42.04885 * 12 11 10 47 47 H 1.09000 * 113.47907 * 24.90425 * 13 12 11 48 48 H 1.09004 * 113.47226 * 254.43520 * 13 12 11 49 49 H 1.09004 * 109.47505 * 50.00108 * 15 14 13 50 50 H 1.08998 * 109.47429 * 289.99246 * 15 14 13 51 51 H 0.96996 * 119.99549 * 359.97438 * 18 16 15 52 52 H 0.97001 * 120.00428 * 179.97438 * 22 21 19 53 53 H 1.09002 * 113.47793 * 141.77840 * 27 14 13 54 54 H 1.09000 * 113.47742 * 272.24856 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.9307 -2.2336 1.0454 6 6 2.7768 -2.6481 -0.1602 7 6 0.4690 -2.6104 0.7962 8 6 2.4297 -2.9439 2.2772 9 8 2.8326 -2.3036 3.2251 10 7 2.4283 -4.2908 2.3256 11 6 2.9128 -4.9813 3.5233 12 6 2.8037 -6.4937 3.3194 13 6 3.3963 -7.3268 4.4646 14 7 2.2467 -8.2399 4.3240 15 6 1.7403 -8.6549 5.6389 16 6 0.4304 -9.3799 5.4667 17 8 -0.0357 -9.5351 4.3576 18 7 -0.2233 -9.8559 6.5450 19 6 -1.4147 -10.5158 6.3883 20 1 -1.8297 -10.6540 5.4008 21 6 -2.0888 -11.0061 7.5001 22 7 -3.2310 -11.6382 7.3499 23 14 -1.3714 -10.7665 9.2080 24 1 -1.8689 -9.4891 9.7791 25 1 -1.7857 -11.8937 10.0815 26 1 0.1105 -10.7261 9.1214 27 6 1.4759 -7.0982 3.7971 28 1 -0.3634 0.6918 -0.7599 29 1 -0.3633 -1.0041 -0.2191 30 1 -0.3634 0.3122 0.9791 31 1 1.8933 -0.5138 -0.8899 32 1 3.1299 1.4426 -0.0005 33 1 1.6765 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.4394 -0.4263 2.1098 36 1 3.0818 -0.4525 1.4240 37 1 2.6993 -3.7257 -0.3052 38 1 2.4160 -2.1343 -1.0512 39 1 3.8182 -2.3797 0.0173 40 1 -0.1766 -1.9962 1.4242 41 1 0.2237 -2.4411 -0.2522 42 1 0.3183 -3.6621 1.0395 43 1 2.1064 -4.8030 1.5673 44 1 2.3095 -4.6864 4.3819 45 1 3.9540 -4.7125 3.7015 46 1 3.1130 -6.8174 2.3256 47 1 3.4183 -6.8000 5.4186 48 1 4.3513 -7.7896 4.2157 49 1 1.5891 -7.7751 6.2644 50 1 2.4630 -9.3185 6.1137 51 1 0.1496 -9.7321 7.4318 52 1 -3.7015 -11.9808 8.1259 53 1 0.8033 -7.3673 2.9826 54 1 0.9854 -6.5103 4.5729 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268895859.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:12 Heat of formation + Delta-G solvation = -72.219677 kcal Electronic energy + Delta-G solvation = -29779.532793 eV Core-core repulsion = 25751.157516 eV Total energy + Delta-G solvation = -4028.375277 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.72530 -41.16120 -39.74795 -38.37641 -36.09969 -35.83065 -34.33194 -33.78709 -32.12297 -29.18224 -28.87881 -27.65561 -27.22213 -26.90302 -26.60940 -24.42903 -23.20609 -21.42888 -21.28162 -20.69788 -20.27582 -19.73966 -17.89589 -17.83712 -17.37558 -16.88426 -16.69450 -16.60248 -16.23963 -16.13869 -15.63053 -15.42227 -15.09262 -14.91212 -14.83972 -14.49029 -14.41766 -14.28528 -14.07453 -13.82817 -13.61863 -13.43108 -13.23766 -13.12966 -12.99098 -12.92239 -12.89939 -12.51962 -12.45870 -12.36586 -12.00541 -11.95504 -11.87228 -11.80005 -11.57496 -11.56250 -11.48435 -11.41010 -11.20652 -10.57485 -10.44119 -10.27161 -10.09696 -9.78915 -8.43451 -6.04365 1.28316 1.33288 1.42502 1.64223 1.92459 2.16316 2.20838 2.68113 3.11902 3.16382 3.37276 3.63352 3.69532 3.72658 3.87128 4.04245 4.13103 4.18004 4.20036 4.22002 4.26955 4.33111 4.40615 4.46079 4.48695 4.60668 4.67561 4.70086 4.75926 4.77172 4.82895 4.84100 4.87690 4.91735 4.93789 5.04191 5.10205 5.13749 5.16010 5.20359 5.29685 5.33815 5.36362 5.38573 5.47639 5.51317 5.53300 5.61783 5.89292 6.01871 6.54072 6.57015 6.85598 7.24185 7.36787 7.93566 8.74130 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017639 B = 0.001874 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.996230 B =14939.281922 C =15560.526120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.095 4.095 3 C -0.148 4.148 4 C -0.086 4.086 5 C -0.076 4.076 6 C -0.141 4.141 7 C -0.148 4.148 8 C 0.517 3.483 9 O -0.587 6.587 10 N -0.717 5.717 11 C 0.136 3.864 12 C -0.105 4.105 13 C 0.012 3.988 14 N -0.476 5.476 15 C 0.018 3.982 16 C 0.450 3.550 17 O -0.609 6.609 18 N -0.592 5.592 19 C -0.329 4.329 20 H 0.055 0.945 21 C -0.015 4.015 22 N -0.933 5.933 23 Si 0.964 3.036 24 H -0.258 1.258 25 H -0.274 1.274 26 H -0.232 1.232 27 C 0.009 3.991 28 H 0.057 0.943 29 H 0.080 0.920 30 H 0.042 0.958 31 H 0.090 0.910 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.045 0.955 35 H 0.047 0.953 36 H 0.054 0.946 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.055 0.945 40 H 0.058 0.942 41 H 0.097 0.903 42 H 0.058 0.942 43 H 0.413 0.587 44 H 0.055 0.945 45 H 0.077 0.923 46 H 0.121 0.879 47 H 0.088 0.912 48 H 0.107 0.893 49 H 0.086 0.914 50 H 0.120 0.880 51 H 0.389 0.611 52 H 0.279 0.721 53 H 0.063 0.937 54 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.589 23.239 -12.238 31.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.113 4.113 3 C -0.205 4.205 4 C -0.124 4.124 5 C -0.079 4.079 6 C -0.198 4.198 7 C -0.205 4.205 8 C 0.305 3.695 9 O -0.467 6.467 10 N -0.369 5.369 11 C 0.012 3.988 12 C -0.124 4.124 13 C -0.116 4.116 14 N -0.198 5.198 15 C -0.114 4.114 16 C 0.238 3.762 17 O -0.493 6.493 18 N -0.234 5.234 19 C -0.458 4.458 20 H 0.073 0.927 21 C -0.214 4.214 22 N -0.574 5.574 23 Si 0.784 3.216 24 H -0.182 1.182 25 H -0.199 1.199 26 H -0.155 1.155 27 C -0.120 4.120 28 H 0.076 0.924 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.108 0.892 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.116 0.884 42 H 0.077 0.923 43 H 0.250 0.750 44 H 0.074 0.926 45 H 0.095 0.905 46 H 0.139 0.861 47 H 0.106 0.894 48 H 0.125 0.875 49 H 0.104 0.896 50 H 0.138 0.862 51 H 0.225 0.775 52 H 0.089 0.911 53 H 0.082 0.918 54 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 16.434 22.798 -12.562 30.783 hybrid contribution -0.744 0.035 1.552 1.722 sum 15.689 22.833 -11.009 29.811 Atomic orbital electron populations 1.22389 0.95015 1.03535 1.01368 1.21216 0.96196 0.96082 0.97810 1.21862 1.00912 0.96006 1.01747 1.21490 1.01039 0.91895 0.97951 1.20808 0.98047 0.96021 0.93004 1.21993 0.99001 1.02698 0.96130 1.22317 0.92653 1.01617 1.03915 1.21164 0.76812 0.82360 0.89207 1.90671 1.49183 1.66992 1.39815 1.45977 1.65240 1.06285 1.19422 1.21255 1.00045 0.89910 0.87593 1.22876 0.95727 0.92566 1.01247 1.23933 0.96494 0.92692 0.98508 1.68827 1.05870 1.26128 1.18989 1.22487 0.94087 1.01059 0.93776 1.20854 0.87889 0.83232 0.84244 1.90538 1.70170 1.62109 1.26476 1.42054 1.20669 1.52374 1.08301 1.18993 0.97841 1.33490 0.95456 0.92694 1.26113 0.95901 0.95630 1.03713 1.69798 1.16583 1.37966 1.33040 0.85373 0.80356 0.79262 0.76594 1.18209 1.19900 1.15506 1.23808 0.96852 0.91280 1.00026 0.92425 0.90135 0.93859 0.89227 0.92757 0.91783 0.93583 0.93368 0.92722 0.90847 0.89170 0.92618 0.92315 0.88442 0.92296 0.75015 0.92624 0.90470 0.86081 0.89408 0.87471 0.89582 0.86214 0.77545 0.91117 0.91813 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.78 7.99 71.98 0.58 -1.21 16 2 C -0.09 -1.05 2.68 -10.79 -0.03 -1.08 16 3 C -0.15 -1.65 9.08 71.98 0.65 -0.99 16 4 C -0.09 -1.37 3.17 30.59 0.10 -1.27 16 5 C -0.08 -1.07 0.64 -52.93 -0.03 -1.10 16 6 C -0.14 -1.31 7.97 71.98 0.57 -0.74 16 7 C -0.15 -1.77 6.95 71.98 0.50 -1.27 16 8 C 0.52 10.63 6.46 87.66 0.57 11.20 16 9 O -0.59 -17.19 15.98 -3.04 -0.05 -17.24 16 10 N -0.72 -11.93 5.15 -463.06 -2.39 -14.31 16 11 C 0.14 2.41 5.58 86.38 0.48 2.89 16 12 C -0.11 -1.87 4.09 -10.45 -0.04 -1.92 16 13 C 0.01 0.23 7.29 83.57 0.61 0.84 16 14 N -0.48 -13.81 6.06 -932.48 -5.65 -19.46 16 15 C 0.02 0.54 5.31 85.56 0.45 0.99 16 16 C 0.45 20.55 7.62 87.66 0.67 21.22 16 17 O -0.61 -33.98 15.34 -3.08 -0.05 -34.03 16 18 N -0.59 -28.22 5.09 -306.97 -1.56 -29.78 16 19 C -0.33 -19.41 10.16 84.04 0.85 -18.55 16 20 H 0.05 3.86 7.39 -2.91 -0.02 3.84 16 21 C -0.01 -0.83 5.50 84.93 0.47 -0.36 16 22 N -0.93 -56.49 13.96 21.67 0.30 -56.19 16 23 Si 0.96 38.99 27.74 68.60 1.90 40.90 16 24 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 25 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 26 H -0.23 -7.90 6.52 99.48 0.65 -7.25 16 27 C 0.01 0.26 6.28 83.57 0.53 0.78 16 28 H 0.06 0.54 8.09 -2.39 -0.02 0.52 16 29 H 0.08 0.73 4.32 -2.38 -0.01 0.72 16 30 H 0.04 0.56 7.88 -2.39 -0.02 0.54 16 31 H 0.09 0.75 5.70 -2.39 -0.01 0.74 16 32 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.05 0.97 7.76 -2.39 -0.02 0.95 16 36 H 0.05 1.01 7.97 -2.39 -0.02 0.99 16 37 H 0.07 0.52 7.56 -2.38 -0.02 0.50 16 38 H 0.09 0.55 6.07 -2.39 -0.01 0.54 16 39 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.06 0.83 6.91 -2.38 -0.02 0.81 16 41 H 0.10 0.76 6.08 -2.39 -0.01 0.74 16 42 H 0.06 0.71 7.12 -2.39 -0.02 0.70 16 43 H 0.41 5.06 7.27 -92.71 -0.67 4.39 16 44 H 0.06 1.17 7.81 -2.39 -0.02 1.15 16 45 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 47 H 0.09 1.35 7.73 -2.39 -0.02 1.33 16 48 H 0.11 1.63 8.14 -2.38 -0.02 1.62 16 49 H 0.09 2.17 7.56 -2.38 -0.02 2.15 16 50 H 0.12 3.07 8.14 -2.39 -0.02 3.06 16 51 H 0.39 15.35 5.76 -92.71 -0.53 14.81 16 52 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 53 H 0.06 2.07 8.13 -2.39 -0.02 2.05 16 54 H 0.06 1.74 7.43 -2.39 -0.02 1.73 16 Total: -1.00 -82.45 414.81 -0.94 -83.39 By element: Atomic # 1 Polarization: 37.67 SS G_CDS: -0.37 Total: 37.30 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: 6.92 Total: 9.43 kcal Atomic # 7 Polarization: -110.45 SS G_CDS: -9.30 Total: -119.75 kcal Atomic # 8 Polarization: -51.17 SS G_CDS: -0.10 Total: -51.27 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 1.90 Total: 40.90 kcal Total: -82.45 -0.94 -83.39 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268895859.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.167 kcal (2) G-P(sol) polarization free energy of solvation -82.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds