Wall clock time and date at job start Sat Apr 11 2020 05:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47487 * 2 1 4 4 C 1.52997 * 109.47122 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.46636 * 179.97438 * 4 3 2 6 6 C 1.50705 * 109.46700 * 179.97438 * 5 4 3 7 7 O 1.21274 * 120.00133 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99771 * 180.02562 * 6 5 4 9 9 C 1.47025 * 125.64749 * 359.96438 * 8 6 5 10 10 C 1.54368 * 107.28586 * 178.94415 * 9 8 6 11 11 C 1.55159 * 102.92042 * 337.85543 * 10 9 8 12 12 H 1.08997 * 111.00350 * 277.36038 * 11 10 9 13 13 C 1.53004 * 111.00288 * 153.54746 * 11 10 9 14 14 H 1.09001 * 109.47471 * 309.34664 * 13 11 10 15 15 C 1.53010 * 109.46691 * 69.34372 * 13 11 10 16 16 N 1.46900 * 109.47160 * 189.34029 * 13 11 10 17 17 C 1.46899 * 110.99872 * 155.00231 * 16 13 11 18 18 C 1.50697 * 109.47258 * 180.02562 * 17 16 13 19 19 O 1.21294 * 119.99906 * 0.02562 * 18 17 16 20 20 N 1.34770 * 120.00141 * 179.97438 * 18 17 16 21 21 C 1.37107 * 120.00118 * 180.02562 * 20 18 17 22 22 H 1.07996 * 119.99870 * 0.02562 * 21 20 18 23 23 C 1.38944 * 120.00114 * 180.02562 * 21 20 18 24 24 N 1.31413 * 120.00152 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00180 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47283 * 179.97438 * 25 23 21 27 27 H 1.48504 * 109.46580 * 60.00514 * 25 23 21 28 28 H 1.48491 * 109.47318 * 300.00433 * 25 23 21 29 29 C 1.47422 * 125.64895 * 179.97438 * 8 6 5 30 30 H 1.09002 * 109.46766 * 59.99896 * 1 2 3 31 31 H 1.09004 * 109.47345 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47025 * 300.00174 * 1 2 3 33 33 H 1.08998 * 109.47547 * 239.99846 * 2 1 3 34 34 H 1.09006 * 109.47234 * 119.99984 * 2 1 3 35 35 H 1.08998 * 109.46853 * 59.99421 * 3 2 1 36 36 H 1.09000 * 109.46501 * 300.00055 * 3 2 1 37 37 H 1.08993 * 109.47145 * 60.00502 * 4 3 2 38 38 H 1.08996 * 109.47074 * 299.99616 * 4 3 2 39 39 H 1.09006 * 109.47131 * 60.00341 * 5 4 3 40 40 H 1.08989 * 109.47368 * 300.00078 * 5 4 3 41 41 H 1.09005 * 109.88117 * 298.38722 * 9 8 6 42 42 H 1.08997 * 109.88651 * 59.40280 * 9 8 6 43 43 H 1.09002 * 110.75618 * 219.49210 * 10 9 8 44 44 H 1.09001 * 110.70920 * 96.20281 * 10 9 8 45 45 H 1.09002 * 109.46782 * 55.38979 * 15 13 11 46 46 H 1.09003 * 109.46546 * 175.38206 * 15 13 11 47 47 H 1.08994 * 109.47488 * 295.38391 * 15 13 11 48 48 H 1.00894 * 111.00152 * 278.95510 * 16 13 11 49 49 H 1.08997 * 109.47121 * 59.99919 * 17 16 13 50 50 H 1.09005 * 109.47122 * 300.00585 * 17 16 13 51 51 H 0.97002 * 120.00398 * 0.02562 * 20 18 17 52 52 H 0.96998 * 119.99975 * 0.02562 * 24 23 21 53 53 H 1.09000 * 110.36456 * 85.25616 * 29 8 6 54 54 H 1.08995 * 110.36686 * 322.93731 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8849 0.0000 6 6 5.5871 2.8848 0.0013 7 8 6.1934 1.8345 0.0021 8 7 6.2610 4.0521 0.0015 9 6 5.6547 5.3915 -0.0002 10 6 6.8082 6.4171 0.0280 11 6 7.9876 5.5967 0.6138 12 1 7.9377 5.5632 1.7021 13 6 9.3319 6.1584 0.1464 14 1 9.3209 6.2726 -0.9375 15 6 9.5703 7.5210 0.8004 16 7 10.4084 5.2357 0.5308 17 6 11.5715 5.3862 -0.3537 18 6 12.6525 4.4255 0.0700 19 8 12.4716 3.6877 1.0155 20 7 13.8199 4.3854 -0.6023 21 6 14.8032 3.5110 -0.2171 22 1 14.6421 2.8541 0.6248 23 6 16.0069 3.4701 -0.9099 24 7 16.2031 4.2698 -1.9341 25 14 17.3468 2.2792 -0.3847 26 1 18.5224 2.4309 -1.2793 27 1 16.8348 0.8880 -0.4726 28 1 17.7481 2.5715 1.0147 29 6 7.7280 4.1971 0.0032 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.6767 1.9562 -0.8900 37 1 3.9337 0.9285 -0.8891 38 1 3.9329 0.9287 0.8909 39 1 3.7163 3.3993 0.8896 40 1 3.7171 3.3982 -0.8903 41 1 5.0591 5.5277 -0.9029 42 1 5.0253 5.5147 0.8812 43 1 6.5624 7.2571 0.6777 44 1 7.0414 6.7626 -0.9792 45 1 9.4999 7.4214 1.8836 46 1 10.5627 7.8838 0.5326 47 1 8.8183 8.2283 0.4509 48 1 10.6693 5.3668 1.4966 49 1 11.9470 6.4074 -0.2897 50 1 11.2770 5.1712 -1.3810 51 1 13.9645 4.9752 -1.3588 52 1 15.5078 4.8889 -2.2062 53 1 8.1151 4.1498 -1.0147 54 1 8.1850 3.4234 0.6200 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271460471.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:42 Heat of formation + Delta-G solvation = -125.546189 kcal Electronic energy + Delta-G solvation = -29187.795232 eV Core-core repulsion = 25157.107544 eV Total energy + Delta-G solvation = -4030.687688 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.21251 -40.38093 -39.21992 -37.20902 -36.81231 -36.27436 -33.58880 -33.17063 -32.76683 -30.70970 -29.90396 -27.98127 -27.78942 -25.79139 -24.80716 -23.04788 -22.90424 -21.84185 -21.66953 -21.10255 -20.03327 -19.96637 -18.28518 -18.04719 -17.33655 -17.04520 -16.74544 -16.51948 -16.23240 -15.85547 -15.67442 -15.50727 -15.27980 -14.71857 -14.59250 -14.48561 -14.33007 -14.20867 -14.06504 -13.76984 -13.57142 -13.36302 -13.29801 -13.15872 -12.85061 -12.82775 -12.70928 -12.60791 -12.17924 -11.96291 -11.93424 -11.93282 -11.90022 -11.86144 -11.83877 -11.67840 -11.54951 -11.52327 -11.38763 -10.87471 -10.42769 -10.12660 -9.65696 -9.31984 -8.94780 -6.08502 1.50740 1.52669 1.61438 1.80984 1.99332 2.01457 2.38724 2.77771 3.14792 3.30058 3.56333 3.63758 3.74634 3.84167 3.93349 3.99669 4.09596 4.25805 4.27070 4.32479 4.33492 4.36098 4.36548 4.39408 4.44611 4.50629 4.59619 4.62536 4.71643 4.77665 4.84339 4.85963 4.93073 4.94744 4.98771 5.00512 5.04416 5.09586 5.17571 5.22842 5.24683 5.31386 5.36570 5.42983 5.43530 5.51832 5.58087 5.93434 6.03394 6.37113 6.55706 6.56733 6.73174 7.16015 7.42535 7.91636 8.53070 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013319 B = 0.001837 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.677296 B =15239.007819 C =16972.330674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.131 4.131 3 C -0.110 4.110 4 C -0.106 4.106 5 C -0.121 4.121 6 C 0.509 3.491 7 O -0.601 6.601 8 N -0.624 5.624 9 C 0.095 3.905 10 C -0.115 4.115 11 C -0.077 4.077 12 H 0.080 0.920 13 C 0.095 3.905 14 H 0.087 0.913 15 C -0.175 4.175 16 N -0.683 5.683 17 C 0.069 3.931 18 C 0.439 3.561 19 O -0.620 6.620 20 N -0.586 5.586 21 C -0.413 4.413 22 H 0.070 0.930 23 C -0.041 4.041 24 N -0.915 5.915 25 Si 1.133 2.867 26 H -0.270 1.270 27 H -0.276 1.276 28 H -0.272 1.272 29 C 0.122 3.878 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.112 0.888 44 H 0.089 0.911 45 H 0.058 0.942 46 H 0.049 0.951 47 H 0.090 0.910 48 H 0.344 0.656 49 H 0.071 0.929 50 H 0.100 0.900 51 H 0.385 0.615 52 H 0.259 0.741 53 H 0.051 0.949 54 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.761 9.557 1.320 33.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.169 4.169 3 C -0.147 4.147 4 C -0.144 4.144 5 C -0.161 4.161 6 C 0.300 3.700 7 O -0.482 6.482 8 N -0.358 5.358 9 C -0.027 4.027 10 C -0.153 4.153 11 C -0.097 4.097 12 H 0.098 0.902 13 C -0.014 4.014 14 H 0.106 0.894 15 C -0.233 4.233 16 N -0.315 5.315 17 C -0.063 4.063 18 C 0.227 3.773 19 O -0.505 6.505 20 N -0.226 5.226 21 C -0.542 4.542 22 H 0.088 0.912 23 C -0.239 4.239 24 N -0.554 5.554 25 Si 0.953 3.047 26 H -0.195 1.195 27 H -0.202 1.202 28 H -0.197 1.197 29 C -0.001 4.001 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.130 0.870 44 H 0.108 0.892 45 H 0.077 0.923 46 H 0.068 0.932 47 H 0.109 0.891 48 H 0.163 0.837 49 H 0.089 0.911 50 H 0.119 0.881 51 H 0.219 0.781 52 H 0.070 0.930 53 H 0.070 0.930 54 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -30.337 7.401 1.236 31.251 hybrid contribution -0.425 1.059 0.295 1.178 sum -30.761 8.460 1.532 31.940 Atomic orbital electron populations 1.21755 0.94822 1.01856 1.02279 1.21563 0.96670 0.97099 1.01553 1.21569 0.92892 0.97018 1.03238 1.21342 0.96432 0.94962 1.01649 1.21693 0.87830 0.99975 1.06556 1.21390 0.91942 0.81701 0.74959 1.90714 1.72029 1.32920 1.52574 1.48811 1.07485 1.07086 1.72394 1.22384 0.96831 0.79628 1.03830 1.22760 0.91912 0.97416 1.03248 1.22241 0.94389 0.92769 1.00317 0.90196 1.21647 0.89384 0.89967 1.00445 0.89445 1.22435 1.02549 0.97085 1.01275 1.60151 1.08507 1.55905 1.06920 1.21520 0.89657 0.96521 0.98605 1.20994 0.83973 0.87379 0.84943 1.90507 1.81194 1.46673 1.32162 1.41986 1.14052 1.36305 1.30238 1.20519 0.97120 1.19078 1.17470 0.91153 1.27803 1.00689 1.01566 0.93844 1.70971 1.36204 1.22202 1.26046 0.82640 0.72706 0.73139 0.76243 1.19462 1.20199 1.19709 1.21947 0.80098 0.98257 0.99781 0.92178 0.92804 0.92192 0.92763 0.92796 0.90623 0.90573 0.93386 0.93446 0.86396 0.86307 0.89022 0.89153 0.86978 0.89217 0.92308 0.93222 0.89101 0.83747 0.91146 0.88146 0.78094 0.92982 0.93034 0.94435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 71.98 0.71 -0.74 16 2 C -0.13 -1.67 5.93 30.59 0.18 -1.49 16 3 C -0.11 -1.23 5.21 30.59 0.16 -1.07 16 4 C -0.11 -1.84 4.50 30.59 0.14 -1.70 16 5 C -0.12 -1.75 4.89 29.85 0.15 -1.60 16 6 C 0.51 13.09 7.85 87.66 0.69 13.78 16 7 O -0.60 -22.77 16.24 -3.01 -0.05 -22.82 16 8 N -0.62 -13.55 3.33 -811.75 -2.70 -16.25 16 9 C 0.09 0.97 6.49 86.74 0.56 1.53 16 10 C -0.12 -1.06 5.82 31.80 0.19 -0.88 16 11 C -0.08 -1.41 2.75 -9.41 -0.03 -1.44 16 12 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 13 C 0.10 1.90 2.12 44.92 0.10 2.00 16 14 H 0.09 1.63 7.71 -2.39 -0.02 1.61 16 15 C -0.17 -2.66 9.00 71.99 0.65 -2.01 16 16 N -0.68 -21.02 5.49 -495.56 -2.72 -23.74 16 17 C 0.07 2.35 5.96 85.56 0.51 2.86 16 18 C 0.44 21.47 7.82 87.66 0.69 22.16 16 19 O -0.62 -35.93 15.78 -3.07 -0.05 -35.97 16 20 N -0.59 -30.61 5.28 -306.99 -1.62 -32.23 16 21 C -0.41 -24.33 9.68 84.04 0.81 -23.52 16 22 H 0.07 4.48 7.16 -2.91 -0.02 4.46 16 23 C -0.04 -2.26 5.50 84.92 0.47 -1.80 16 24 N -0.92 -51.85 13.68 21.66 0.30 -51.55 16 25 Si 1.13 49.91 29.92 68.60 2.05 51.96 16 26 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 27 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 28 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 29 C 0.12 3.29 6.01 86.85 0.52 3.81 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 35 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.05 1.03 8.10 -2.39 -0.02 1.01 16 38 H 0.05 1.03 8.10 -2.39 -0.02 1.01 16 39 H 0.12 1.08 8.14 -2.38 -0.02 1.06 16 40 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 42 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 44 H 0.09 0.69 7.97 -2.39 -0.02 0.67 16 45 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.05 0.86 7.36 -2.39 -0.02 0.84 16 47 H 0.09 0.88 7.75 -2.39 -0.02 0.86 16 48 H 0.34 11.33 8.18 -89.70 -0.73 10.60 16 49 H 0.07 2.02 7.37 -2.39 -0.02 2.00 16 50 H 0.10 3.10 8.06 -2.38 -0.02 3.08 16 51 H 0.38 18.29 6.73 -92.71 -0.62 17.67 16 52 H 0.26 14.17 6.77 -92.71 -0.63 13.54 16 53 H 0.05 1.51 8.03 -2.39 -0.02 1.49 16 54 H 0.04 1.36 8.04 -2.39 -0.02 1.34 16 Total: -1.00 -83.94 431.81 1.35 -82.59 By element: Atomic # 1 Polarization: 38.46 SS G_CDS: -0.35 Total: 38.12 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 6.49 Total: 9.89 kcal Atomic # 7 Polarization: -117.03 SS G_CDS: -6.74 Total: -123.78 kcal Atomic # 8 Polarization: -58.69 SS G_CDS: -0.10 Total: -58.79 kcal Atomic # 14 Polarization: 49.91 SS G_CDS: 2.05 Total: 51.96 kcal Total: -83.94 1.35 -82.59 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271460471.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.956 kcal (2) G-P(sol) polarization free energy of solvation -83.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds