Wall clock time and date at job start Sat Apr 11 2020 05:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46808 * 2 1 4 4 C 1.53001 * 109.47070 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47143 * 179.97438 * 4 3 2 6 6 C 1.50706 * 109.47270 * 179.97438 * 5 4 3 7 7 O 1.21277 * 119.99843 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00046 * 180.02562 * 6 5 4 9 9 C 1.47015 * 125.65233 * 0.02562 * 8 6 5 10 10 C 1.54326 * 107.27672 * 181.01678 * 9 8 6 11 11 C 1.55161 * 102.93909 * 22.19133 * 10 9 8 12 12 H 1.09000 * 111.00023 * 82.61194 * 11 10 9 13 13 C 1.52995 * 111.00761 * 206.42560 * 11 10 9 14 14 H 1.09000 * 109.47227 * 56.83876 * 13 11 10 15 15 C 1.53007 * 109.46826 * 296.84673 * 13 11 10 16 16 N 1.46898 * 109.47543 * 176.84760 * 13 11 10 17 17 C 1.46894 * 111.00196 * 205.00270 * 16 13 11 18 18 C 1.50703 * 109.47208 * 180.02562 * 17 16 13 19 19 O 1.21290 * 120.00016 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99585 * 179.97438 * 18 17 16 21 21 C 1.37105 * 119.99675 * 179.97438 * 20 18 17 22 22 H 1.08000 * 119.99955 * 0.02562 * 21 20 18 23 23 C 1.38947 * 120.00096 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00038 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99769 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46860 * 180.02562 * 25 23 21 27 27 H 1.48494 * 109.47089 * 59.99927 * 25 23 21 28 28 H 1.48496 * 109.46972 * 299.99806 * 25 23 21 29 29 C 1.47430 * 125.64559 * 179.97438 * 8 6 5 30 30 H 1.09006 * 109.47030 * 300.00405 * 1 2 3 31 31 H 1.08999 * 109.47501 * 59.99979 * 1 2 3 32 32 H 1.08999 * 109.47333 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47217 * 239.99715 * 2 1 3 34 34 H 1.09002 * 109.46940 * 119.99532 * 2 1 3 35 35 H 1.08997 * 109.47465 * 59.99867 * 3 2 1 36 36 H 1.09002 * 109.46988 * 299.99503 * 3 2 1 37 37 H 1.08997 * 109.47288 * 59.99510 * 4 3 2 38 38 H 1.09002 * 109.46607 * 299.99489 * 4 3 2 39 39 H 1.09006 * 109.47380 * 59.99855 * 5 4 3 40 40 H 1.08999 * 109.47606 * 299.99723 * 5 4 3 41 41 H 1.09008 * 109.88415 * 61.60074 * 9 8 6 42 42 H 1.08996 * 109.88699 * 300.43704 * 9 8 6 43 43 H 1.08998 * 110.71706 * 263.83697 * 10 9 8 44 44 H 1.08998 * 110.72272 * 140.55592 * 10 9 8 45 45 H 1.08996 * 109.47118 * 65.07650 * 15 13 11 46 46 H 1.09005 * 109.46812 * 185.07467 * 15 13 11 47 47 H 1.08998 * 109.47174 * 305.07310 * 15 13 11 48 48 H 1.00900 * 110.99888 * 81.04386 * 16 13 11 49 49 H 1.08994 * 109.47581 * 59.99043 * 17 16 13 50 50 H 1.09005 * 109.46862 * 299.99476 * 17 16 13 51 51 H 0.97000 * 120.00748 * 359.97438 * 20 18 17 52 52 H 0.96995 * 119.99834 * 0.02562 * 24 23 21 53 53 H 1.09000 * 110.36723 * 37.07383 * 29 8 6 54 54 H 1.08997 * 110.36546 * 274.75100 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0799 2.8850 -0.0013 6 6 5.5869 2.8851 -0.0013 7 8 6.1934 1.8349 -0.0004 8 7 6.2607 4.0523 -0.0013 9 6 5.6546 5.3917 -0.0008 10 6 6.8079 6.4168 -0.0271 11 6 7.9882 5.5969 -0.6121 12 1 7.9392 5.5637 -1.7005 13 6 9.3318 6.1587 -0.1434 14 1 9.3609 6.1698 0.9461 15 6 9.5008 7.5844 -0.6725 16 7 10.4204 5.3148 -0.6539 17 6 11.6129 5.4218 0.1972 18 6 12.7060 4.5448 -0.3570 19 8 12.5107 3.8942 -1.3618 20 7 13.9005 4.4834 0.2641 21 6 14.8948 3.6851 -0.2398 22 1 14.7209 3.1058 -1.1346 23 6 16.1266 3.6222 0.4001 24 7 16.3387 4.3282 1.4879 25 14 17.4815 2.5350 -0.2869 26 1 18.6872 2.6437 0.5732 27 1 17.8156 2.9724 -1.6661 28 1 17.0185 1.1243 -0.3135 29 6 7.7279 4.1975 -0.0008 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 3.9330 0.9288 -0.8908 38 1 3.9336 0.9287 0.8892 39 1 3.7169 3.3992 0.8887 40 1 3.7162 3.3986 -0.8913 41 1 5.0579 5.5282 0.9012 42 1 5.0283 5.5156 -0.8842 43 1 7.0401 6.7619 0.9804 44 1 6.5625 7.2568 -0.6768 45 1 8.7468 8.2305 -0.2230 46 1 10.4943 7.9520 -0.4154 47 1 9.3818 7.5864 -1.7560 48 1 10.6379 5.5454 -1.6118 49 1 11.3669 5.1008 1.2094 50 1 11.9533 6.4571 0.2171 51 1 14.0569 5.0039 1.0675 52 1 15.6353 4.8929 1.8444 53 1 8.1859 3.4233 -0.6164 54 1 8.1133 4.1508 1.0177 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271460472.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:44 Heat of formation + Delta-G solvation = -125.624862 kcal Electronic energy + Delta-G solvation = -29150.581932 eV Core-core repulsion = 25119.890833 eV Total energy + Delta-G solvation = -4030.691099 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.21804 -40.38157 -39.22688 -37.21227 -36.81214 -36.27442 -33.59713 -33.17052 -32.77458 -30.68209 -29.92375 -27.97773 -27.79435 -25.80099 -24.78567 -23.08929 -22.89674 -21.84041 -21.67283 -21.08896 -20.02593 -19.96506 -18.28726 -18.05614 -17.34077 -17.05616 -16.74646 -16.52200 -16.23551 -15.86897 -15.68428 -15.50080 -15.25305 -14.71679 -14.59946 -14.49244 -14.32042 -14.21524 -14.06751 -13.78090 -13.57354 -13.36260 -13.31414 -13.15990 -12.83463 -12.81889 -12.68850 -12.60902 -12.22467 -11.96553 -11.93324 -11.93208 -11.90215 -11.86283 -11.82672 -11.67979 -11.54800 -11.51784 -11.38729 -10.87781 -10.42769 -10.12648 -9.66208 -9.32019 -8.94705 -6.08441 1.50827 1.52789 1.61132 1.81095 1.99306 2.00819 2.38828 2.78050 3.14886 3.30084 3.55414 3.63417 3.74510 3.84250 3.93045 3.99754 4.09507 4.25693 4.27032 4.32245 4.33039 4.36046 4.36803 4.39350 4.44667 4.50770 4.58957 4.61957 4.71638 4.77226 4.84379 4.86318 4.92665 4.93578 4.98866 4.99743 5.04243 5.09502 5.17122 5.22817 5.24830 5.31372 5.36494 5.42450 5.43548 5.51840 5.58170 5.93461 6.03488 6.37379 6.55209 6.56759 6.73161 7.15550 7.42564 7.91534 8.53135 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013817 B = 0.001804 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.070632 B =15520.994579 C =17176.991494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.131 4.131 3 C -0.110 4.110 4 C -0.106 4.106 5 C -0.121 4.121 6 C 0.509 3.491 7 O -0.601 6.601 8 N -0.624 5.624 9 C 0.095 3.905 10 C -0.116 4.116 11 C -0.077 4.077 12 H 0.078 0.922 13 C 0.095 3.905 14 H 0.086 0.914 15 C -0.175 4.175 16 N -0.683 5.683 17 C 0.069 3.931 18 C 0.439 3.561 19 O -0.619 6.619 20 N -0.586 5.586 21 C -0.413 4.413 22 H 0.071 0.929 23 C -0.041 4.041 24 N -0.915 5.915 25 Si 1.133 2.867 26 H -0.270 1.270 27 H -0.272 1.272 28 H -0.276 1.276 29 C 0.120 3.880 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.046 0.954 38 H 0.048 0.952 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.111 0.889 45 H 0.090 0.910 46 H 0.048 0.952 47 H 0.059 0.941 48 H 0.344 0.656 49 H 0.100 0.900 50 H 0.071 0.929 51 H 0.385 0.615 52 H 0.259 0.741 53 H 0.037 0.963 54 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.125 8.998 0.362 33.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.169 4.169 3 C -0.147 4.147 4 C -0.144 4.144 5 C -0.161 4.161 6 C 0.300 3.700 7 O -0.482 6.482 8 N -0.357 5.357 9 C -0.027 4.027 10 C -0.154 4.154 11 C -0.097 4.097 12 H 0.097 0.903 13 C -0.014 4.014 14 H 0.104 0.896 15 C -0.234 4.234 16 N -0.315 5.315 17 C -0.063 4.063 18 C 0.227 3.773 19 O -0.505 6.505 20 N -0.226 5.226 21 C -0.542 4.542 22 H 0.089 0.911 23 C -0.239 4.239 24 N -0.554 5.554 25 Si 0.953 3.047 26 H -0.195 1.195 27 H -0.197 1.197 28 H -0.202 1.202 29 C -0.003 4.003 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.111 0.889 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.129 0.871 45 H 0.109 0.891 46 H 0.067 0.933 47 H 0.078 0.922 48 H 0.163 0.837 49 H 0.118 0.882 50 H 0.088 0.912 51 H 0.219 0.781 52 H 0.070 0.930 53 H 0.056 0.944 54 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -30.651 6.886 0.252 31.416 hybrid contribution -0.488 1.042 -0.118 1.157 sum -31.139 7.928 0.134 32.133 Atomic orbital electron populations 1.21757 0.94836 1.01853 1.02274 1.21563 0.96659 0.97097 1.01557 1.21570 0.92909 0.97016 1.03232 1.21341 0.96421 0.94956 1.01659 1.21693 0.87842 0.99981 1.06557 1.21384 0.91937 0.81693 0.74942 1.90713 1.72017 1.32908 1.52583 1.48795 1.07429 1.07092 1.72403 1.22381 0.96846 0.79616 1.03825 1.22755 0.91893 0.97425 1.03285 1.22226 0.94371 0.92764 1.00313 0.90324 1.21631 0.89236 0.90682 0.99884 0.89570 1.22437 1.02635 0.96325 1.01957 1.60138 1.06842 1.58559 1.05951 1.21520 0.89203 0.97524 0.98069 1.20988 0.84009 0.86369 0.85915 1.90504 1.81977 1.49298 1.28740 1.41987 1.11984 1.42037 1.26569 1.20523 0.95008 1.25623 1.13041 0.91126 1.27806 1.00750 1.00329 0.95013 1.70969 1.35932 1.27241 1.21290 0.82641 0.72579 0.73944 0.75563 1.19482 1.19693 1.20184 1.22002 0.80270 0.98271 0.99806 0.92170 0.92214 0.92806 0.92808 0.92734 0.90555 0.90659 0.93471 0.93331 0.86275 0.86438 0.88920 0.89224 0.89114 0.87069 0.89073 0.93257 0.92205 0.83702 0.88185 0.91156 0.78100 0.92986 0.94426 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 71.98 0.71 -0.73 16 2 C -0.13 -1.64 5.93 30.60 0.18 -1.46 16 3 C -0.11 -1.21 5.21 30.59 0.16 -1.05 16 4 C -0.11 -1.81 4.50 30.59 0.14 -1.68 16 5 C -0.12 -1.72 4.89 29.85 0.15 -1.58 16 6 C 0.51 12.92 7.85 87.66 0.69 13.61 16 7 O -0.60 -22.48 16.24 -3.02 -0.05 -22.53 16 8 N -0.62 -13.34 3.33 -811.79 -2.70 -16.04 16 9 C 0.09 0.95 6.49 86.73 0.56 1.52 16 10 C -0.12 -1.06 5.53 31.79 0.18 -0.88 16 11 C -0.08 -1.41 2.77 -9.40 -0.03 -1.43 16 12 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 13 C 0.10 1.91 2.10 44.92 0.09 2.00 16 14 H 0.09 1.63 7.79 -2.39 -0.02 1.61 16 15 C -0.17 -2.64 8.91 71.98 0.64 -2.00 16 16 N -0.68 -21.01 5.65 -495.59 -2.80 -23.81 16 17 C 0.07 2.34 5.96 85.56 0.51 2.85 16 18 C 0.44 21.45 7.82 87.66 0.69 22.14 16 19 O -0.62 -35.82 15.78 -3.06 -0.05 -35.87 16 20 N -0.59 -30.58 5.28 -306.98 -1.62 -32.21 16 21 C -0.41 -24.30 9.68 84.04 0.81 -23.49 16 22 H 0.07 4.49 7.16 -2.91 -0.02 4.47 16 23 C -0.04 -2.26 5.50 84.93 0.47 -1.79 16 24 N -0.92 -51.84 13.68 21.66 0.30 -51.55 16 25 Si 1.13 49.84 29.92 68.60 2.05 51.89 16 26 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 27 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 28 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 29 C 0.12 3.16 6.16 86.86 0.54 3.70 16 30 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.05 0.75 8.14 -2.39 -0.02 0.74 16 34 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.05 1.01 8.10 -2.39 -0.02 0.99 16 38 H 0.05 1.03 8.10 -2.39 -0.02 1.01 16 39 H 0.12 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 42 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.09 0.67 8.04 -2.39 -0.02 0.65 16 44 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.09 0.87 7.57 -2.39 -0.02 0.85 16 46 H 0.05 0.85 7.35 -2.38 -0.02 0.83 16 47 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.34 11.29 8.18 -89.69 -0.73 10.55 16 49 H 0.10 3.10 8.05 -2.39 -0.02 3.08 16 50 H 0.07 2.02 7.36 -2.38 -0.02 2.00 16 51 H 0.38 18.29 6.73 -92.71 -0.62 17.67 16 52 H 0.26 14.17 6.77 -92.71 -0.63 13.54 16 53 H 0.04 1.35 8.04 -2.39 -0.02 1.33 16 54 H 0.05 1.52 8.03 -2.39 -0.02 1.50 16 Total: -1.00 -83.66 431.69 1.27 -82.39 By element: Atomic # 1 Polarization: 38.33 SS G_CDS: -0.35 Total: 37.98 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: 6.49 Total: 9.73 kcal Atomic # 7 Polarization: -116.77 SS G_CDS: -6.83 Total: -123.59 kcal Atomic # 8 Polarization: -58.29 SS G_CDS: -0.10 Total: -58.39 kcal Atomic # 14 Polarization: 49.84 SS G_CDS: 2.05 Total: 51.89 kcal Total: -83.66 1.27 -82.39 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271460472.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.239 kcal (2) G-P(sol) polarization free energy of solvation -83.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds