Wall clock time and date at job start Sat Apr 11 2020 05:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46759 * 2 1 4 4 C 1.52999 * 109.47410 * 239.99505 * 2 1 3 5 5 C 1.53004 * 109.46824 * 119.99190 * 2 1 3 6 6 C 1.50692 * 109.46937 * 60.00605 * 5 2 1 7 7 O 1.21285 * 120.00467 * 359.97438 * 6 5 2 8 8 N 1.34775 * 120.00345 * 179.97438 * 6 5 2 9 9 C 1.46500 * 120.00394 * 179.97438 * 8 6 5 10 10 C 1.50708 * 109.46974 * 179.97438 * 9 8 6 11 11 O 1.21276 * 119.99905 * 0.02562 * 10 9 8 12 12 N 1.34771 * 119.99871 * 179.97438 * 10 9 8 13 13 C 1.46501 * 120.00400 * 180.02562 * 12 10 9 14 14 H 1.09009 * 110.01355 * 326.39352 * 13 12 10 15 15 C 1.53875 * 110.03142 * 87.83166 * 13 12 10 16 16 C 1.54265 * 106.59842 * 119.28875 * 15 13 12 17 17 C 1.54896 * 104.19299 * 23.60911 * 16 15 13 18 18 C 1.54262 * 110.03733 * 205.00348 * 13 12 10 19 19 H 1.09002 * 110.48340 * 335.91457 * 18 13 12 20 20 C 1.52996 * 110.48921 * 98.42255 * 18 13 12 21 21 N 1.46498 * 109.47059 * 184.99914 * 20 18 13 22 22 C 1.36943 * 119.99752 * 179.72430 * 21 20 18 23 23 H 1.08002 * 119.99793 * 0.27665 * 22 21 20 24 24 C 1.38811 * 120.00012 * 180.27737 * 22 21 20 25 25 N 1.31624 * 119.99698 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00072 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47294 * 90.00155 * 26 24 22 28 28 H 1.48499 * 109.47218 * 210.00015 * 26 24 22 29 29 H 1.48496 * 109.47166 * 329.99846 * 26 24 22 30 30 H 1.09002 * 109.47422 * 300.00720 * 1 2 3 31 31 H 1.08998 * 109.47024 * 60.00222 * 1 2 3 32 32 H 1.09004 * 109.46941 * 180.02562 * 1 2 3 33 33 H 1.09009 * 109.47009 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.46799 * 299.99103 * 3 2 1 35 35 H 1.08994 * 109.47544 * 59.99750 * 3 2 1 36 36 H 1.08991 * 109.46888 * 299.99718 * 4 2 1 37 37 H 1.08998 * 109.46804 * 60.00139 * 4 2 1 38 38 H 1.08997 * 109.46846 * 179.97438 * 4 2 1 39 39 H 1.08994 * 109.47517 * 300.00274 * 5 2 1 40 40 H 1.09009 * 109.46535 * 180.02562 * 5 2 1 41 41 H 0.97003 * 119.99729 * 359.97438 * 8 6 5 42 42 H 1.09003 * 109.46862 * 60.00448 * 9 8 6 43 43 H 1.08995 * 109.47416 * 299.99721 * 9 8 6 44 44 H 0.97003 * 120.00120 * 0.02562 * 12 10 9 45 45 H 1.09004 * 110.03192 * 238.57342 * 15 13 12 46 46 H 1.09001 * 110.03516 * 0.02562 * 15 13 12 47 47 H 1.09000 * 110.48744 * 142.28352 * 16 15 13 48 48 H 1.08994 * 110.48769 * 264.80024 * 16 15 13 49 49 H 1.09006 * 110.75259 * 203.74164 * 17 16 15 50 50 H 1.09008 * 110.75311 * 80.37492 * 17 16 15 51 51 H 1.09004 * 109.47066 * 65.00182 * 20 18 13 52 52 H 1.08994 * 109.46974 * 305.00330 * 20 18 13 53 53 H 0.97001 * 120.00384 * 0.02562 * 21 20 18 54 54 H 0.96999 * 119.99739 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0399 -0.7211 1.2494 6 6 1.5377 -2.1419 1.2495 7 8 0.8401 -2.5386 0.3401 8 7 1.8636 -2.9718 2.2601 9 6 1.3749 -4.3529 2.2604 10 6 1.8783 -5.0636 3.4904 11 8 2.5761 -4.4743 4.2882 12 7 1.5521 -6.3537 3.7041 13 6 2.0410 -7.0445 4.9000 14 1 3.0308 -6.6737 5.1666 15 6 1.0640 -6.8296 6.0692 16 6 0.5603 -8.2271 6.4851 17 6 1.6697 -9.1915 5.9967 18 6 2.0970 -8.5650 4.6462 19 1 1.4008 -8.8458 3.8559 20 6 3.5195 -8.9952 4.2826 21 7 3.5247 -10.4173 3.9307 22 6 4.6942 -11.0272 3.5625 23 1 5.6135 -10.4609 3.5360 24 6 4.6982 -12.3733 3.2235 25 7 3.5777 -13.0632 3.2554 26 14 6.2936 -13.2055 2.7220 27 1 6.9613 -13.7621 3.9260 28 1 5.9999 -14.3038 1.7666 29 1 7.1877 -12.2122 2.0747 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9563 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.6768 -1.7489 -1.2490 37 1 1.6768 -0.2075 -2.1391 38 1 3.1300 -0.7209 -1.2493 39 1 1.6766 -0.2072 2.1393 40 1 3.1300 -0.7207 1.2496 41 1 2.4218 -2.6547 2.9873 42 1 1.7376 -4.8669 1.3703 43 1 0.2849 -4.3527 2.2611 44 1 0.9937 -6.8249 3.0661 45 1 1.5794 -6.3547 6.9040 46 1 0.2259 -6.2117 5.7468 47 1 0.4524 -8.2871 7.5681 48 1 -0.3868 -8.4527 5.9952 49 1 1.2711 -10.1952 5.8481 50 1 2.5047 -9.2061 6.6972 51 1 4.1783 -8.8295 5.1351 52 1 3.8703 -8.4093 3.4331 53 1 2.6990 -10.9258 3.9542 54 1 3.5805 -14.0039 3.0188 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272344348.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:53 Heat of formation + Delta-G solvation = -111.019201 kcal Electronic energy + Delta-G solvation = -29618.641269 eV Core-core repulsion = 25588.583519 eV Total energy + Delta-G solvation = -4030.057750 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.51574 -40.82864 -39.26038 -37.51195 -36.34272 -35.40276 -34.76590 -33.30214 -30.78174 -30.19803 -28.95133 -28.07098 -27.99789 -27.22803 -26.20264 -23.91003 -22.29690 -21.68887 -21.26933 -20.89163 -19.94517 -19.23347 -18.48178 -17.85195 -17.18388 -17.01525 -16.83646 -16.49868 -16.17233 -15.82073 -15.57772 -15.25529 -15.21168 -15.14067 -15.08246 -14.84031 -14.53083 -14.21539 -13.94066 -13.65458 -13.47806 -13.16641 -12.95754 -12.92039 -12.88851 -12.76388 -12.64066 -12.46347 -12.19596 -12.18467 -12.01421 -11.96191 -11.87368 -11.63941 -11.61077 -11.58919 -11.50956 -11.42700 -11.06335 -10.93199 -10.50986 -10.20141 -10.04354 -9.00471 -7.96573 -5.24736 1.46296 1.46849 1.47408 1.55896 1.66129 1.79653 2.46754 2.54690 3.36416 3.43199 3.61169 3.67803 3.74241 3.89557 3.91845 3.96506 4.16329 4.26863 4.31845 4.41078 4.41598 4.48480 4.54896 4.59118 4.62103 4.66215 4.67385 4.69727 4.74738 4.87445 4.89206 4.98280 5.01660 5.01779 5.09162 5.11965 5.17114 5.18695 5.20102 5.25031 5.33653 5.36566 5.40849 5.46126 5.50670 5.56084 5.58615 5.69325 6.25983 6.43831 6.51507 7.09982 7.25788 7.32994 8.08151 8.32992 9.26474 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012723 B = 0.001994 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.279265 B =14035.271306 C =15596.692879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.053 4.053 3 C -0.138 4.138 4 C -0.153 4.153 5 C -0.129 4.129 6 C 0.513 3.487 7 O -0.560 6.560 8 N -0.718 5.718 9 C 0.104 3.896 10 C 0.512 3.488 11 O -0.571 6.571 12 N -0.706 5.706 13 C 0.154 3.846 14 H 0.074 0.926 15 C -0.122 4.122 16 C -0.113 4.113 17 C -0.112 4.112 18 C -0.092 4.092 19 H 0.085 0.915 20 C 0.162 3.838 21 N -0.739 5.739 22 C -0.247 4.247 23 H 0.070 0.930 24 C -0.072 4.072 25 N -0.965 5.965 26 Si 0.971 3.029 27 H -0.287 1.287 28 H -0.293 1.293 29 H -0.273 1.273 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.415 0.585 42 H 0.102 0.898 43 H 0.112 0.888 44 H 0.415 0.585 45 H 0.070 0.930 46 H 0.077 0.923 47 H 0.077 0.923 48 H 0.076 0.924 49 H 0.059 0.941 50 H 0.059 0.941 51 H 0.015 0.985 52 H 0.011 0.989 53 H 0.376 0.624 54 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.781 27.737 -0.467 29.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.053 4.053 3 C -0.196 4.196 4 C -0.210 4.210 5 C -0.168 4.168 6 C 0.301 3.699 7 O -0.440 6.440 8 N -0.374 5.374 9 C -0.024 4.024 10 C 0.299 3.701 11 O -0.451 6.451 12 N -0.358 5.358 13 C 0.049 3.951 14 H 0.093 0.907 15 C -0.161 4.161 16 C -0.150 4.150 17 C -0.150 4.150 18 C -0.111 4.111 19 H 0.103 0.897 20 C 0.035 3.965 21 N -0.382 5.382 22 C -0.379 4.379 23 H 0.088 0.912 24 C -0.265 4.265 25 N -0.616 5.616 26 Si 0.800 3.200 27 H -0.214 1.214 28 H -0.220 1.220 29 H -0.198 1.198 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.132 0.868 40 H 0.128 0.872 41 H 0.253 0.747 42 H 0.120 0.880 43 H 0.130 0.870 44 H 0.252 0.748 45 H 0.088 0.912 46 H 0.095 0.905 47 H 0.096 0.904 48 H 0.095 0.905 49 H 0.078 0.922 50 H 0.078 0.922 51 H 0.033 0.967 52 H 0.029 0.971 53 H 0.209 0.791 54 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.589 27.867 -0.574 29.166 hybrid contribution 0.723 -1.335 -0.329 1.553 sum -7.867 26.532 -0.903 27.688 Atomic orbital electron populations 1.22058 0.94758 1.02664 1.01314 1.20304 0.95862 0.95527 0.93642 1.21861 1.01354 0.93917 1.02430 1.22072 1.00340 1.01568 0.96993 1.21841 1.03479 0.90341 1.01178 1.21195 0.79505 0.88641 0.80524 1.90602 1.39092 1.77960 1.36301 1.45845 1.54157 1.10852 1.26520 1.21051 1.01652 0.83650 0.96028 1.20751 0.79665 0.82441 0.87250 1.90677 1.39514 1.66603 1.48268 1.46020 1.52807 1.11410 1.25545 1.21522 0.98204 0.90387 0.85010 0.90734 1.22469 0.98639 0.97864 0.97115 1.22323 0.97946 0.93201 1.01580 1.22410 0.98666 0.98762 0.95131 1.22283 0.96329 0.93471 0.99013 0.89699 1.20785 0.95131 0.84554 0.96023 1.42471 1.07804 1.06330 1.81582 1.19586 0.88894 0.92993 1.36419 0.91200 1.25518 1.00135 0.97410 1.03444 1.69798 1.26879 1.08253 1.56652 0.85178 0.79363 0.77993 0.77453 1.21390 1.21997 1.19757 0.92604 0.93033 0.92079 0.91930 0.92376 0.91644 0.92152 0.92982 0.92939 0.86836 0.87248 0.74722 0.88032 0.86984 0.74811 0.91170 0.90472 0.90388 0.90496 0.92204 0.92186 0.96728 0.97145 0.79112 0.93949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 8.18 71.98 0.59 -1.75 16 2 C -0.05 -0.72 0.77 -52.18 -0.04 -0.76 16 3 C -0.14 -1.33 8.47 71.98 0.61 -0.72 16 4 C -0.15 -2.53 8.18 71.98 0.59 -1.95 16 5 C -0.13 -1.54 4.77 29.85 0.14 -1.40 16 6 C 0.51 9.19 7.24 87.65 0.63 9.82 16 7 O -0.56 -13.34 11.35 -3.05 -0.03 -13.38 16 8 N -0.72 -12.25 5.53 -466.78 -2.58 -14.83 16 9 C 0.10 1.78 6.15 85.64 0.53 2.31 16 10 C 0.51 10.95 7.90 87.66 0.69 11.64 16 11 O -0.57 -15.70 15.32 -3.02 -0.05 -15.74 16 12 N -0.71 -14.32 4.98 -439.10 -2.19 -16.51 16 13 C 0.15 3.76 2.82 45.71 0.13 3.89 16 14 H 0.07 2.16 7.26 -2.38 -0.02 2.15 16 15 C -0.12 -2.50 6.59 31.32 0.21 -2.29 16 16 C -0.11 -2.29 6.83 31.67 0.22 -2.07 16 17 C -0.11 -3.10 6.19 31.89 0.20 -2.90 16 18 C -0.09 -2.67 2.59 -9.72 -0.03 -2.69 16 19 H 0.08 2.42 7.74 -2.39 -0.02 2.40 16 20 C 0.16 6.37 5.54 86.38 0.48 6.85 16 21 N -0.74 -36.94 5.49 -343.46 -1.89 -38.82 16 22 C -0.25 -13.85 9.99 84.03 0.84 -13.01 16 23 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 24 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 25 N -0.97 -58.36 13.06 21.65 0.28 -58.07 16 26 Si 0.97 46.21 29.55 68.60 2.03 48.24 16 27 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 28 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 29 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 1.26 5.51 -2.39 -0.01 1.25 16 33 H 0.06 0.52 8.14 -2.38 -0.02 0.51 16 34 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 35 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.06 1.32 5.51 -2.39 -0.01 1.31 16 37 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.41 6.68 7.44 -92.71 -0.69 5.99 16 42 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.41 6.66 8.36 -92.71 -0.77 5.89 16 45 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 46 H 0.08 1.42 7.92 -2.39 -0.02 1.40 16 47 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 49 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 50 H 0.06 1.79 7.97 -2.38 -0.02 1.77 16 51 H 0.01 0.60 8.02 -2.38 -0.02 0.58 16 52 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 53 H 0.38 19.70 7.64 -92.71 -0.71 18.99 16 54 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -70.28 424.06 0.55 -69.73 By element: Atomic # 1 Polarization: 39.38 SS G_CDS: -1.27 Total: 38.11 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: 6.25 Total: 1.27 kcal Atomic # 7 Polarization: -121.86 SS G_CDS: -6.37 Total: -128.23 kcal Atomic # 8 Polarization: -29.04 SS G_CDS: -0.08 Total: -29.12 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -70.28 0.55 -69.73 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272344348.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.288 kcal (2) G-P(sol) polarization free energy of solvation -70.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds