Wall clock time and date at job start Sat Apr 11 2020 05:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46877 * 2 1 4 4 C 1.52998 * 109.46944 * 240.00682 * 2 1 3 5 5 C 1.52995 * 109.47295 * 120.00187 * 2 1 3 6 6 C 1.50700 * 109.47067 * 60.00396 * 5 2 1 7 7 O 1.21280 * 120.00118 * 359.97438 * 6 5 2 8 8 N 1.34773 * 120.00187 * 179.97438 * 6 5 2 9 9 C 1.46501 * 120.00423 * 179.97438 * 8 6 5 10 10 C 1.50694 * 109.47371 * 180.02562 * 9 8 6 11 11 O 1.21279 * 120.00135 * 359.97438 * 10 9 8 12 12 N 1.34781 * 119.99853 * 180.02562 * 10 9 8 13 13 C 1.46502 * 119.99565 * 180.02562 * 12 10 9 14 14 H 1.08998 * 110.81794 * 31.65839 * 13 12 10 15 15 C 1.54895 * 110.75342 * 268.32017 * 13 12 10 16 16 C 1.54259 * 104.19373 * 203.74566 * 15 13 12 17 17 C 1.53871 * 106.60160 * 23.61345 * 16 15 13 18 18 C 1.54260 * 106.59937 * 359.97438 * 17 16 15 19 19 H 1.09008 * 110.48690 * 95.20309 * 18 17 16 20 20 C 1.53001 * 110.48860 * 217.71147 * 18 17 16 21 21 N 1.46490 * 109.47264 * 293.54505 * 20 18 17 22 22 C 1.36935 * 120.00121 * 179.97438 * 21 20 18 23 23 H 1.07997 * 120.00139 * 0.02562 * 22 21 20 24 24 C 1.38816 * 120.00401 * 180.02562 * 22 21 20 25 25 N 1.31624 * 119.99569 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00172 * 180.02562 * 24 22 21 27 27 H 1.48508 * 109.46685 * 269.99637 * 26 24 22 28 28 H 1.48494 * 109.47357 * 29.99716 * 26 24 22 29 29 H 1.48502 * 109.47120 * 150.00435 * 26 24 22 30 30 H 1.09001 * 109.47280 * 299.99115 * 1 2 3 31 31 H 1.08996 * 109.47676 * 59.99759 * 1 2 3 32 32 H 1.09007 * 109.46906 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47592 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47659 * 300.00619 * 3 2 1 35 35 H 1.09005 * 109.46916 * 60.00346 * 3 2 1 36 36 H 1.08997 * 109.46989 * 299.99248 * 4 2 1 37 37 H 1.08997 * 109.47722 * 59.99645 * 4 2 1 38 38 H 1.09005 * 109.47158 * 179.97438 * 4 2 1 39 39 H 1.08993 * 109.47618 * 300.00227 * 5 2 1 40 40 H 1.09005 * 109.46961 * 179.97438 * 5 2 1 41 41 H 0.97004 * 120.00132 * 0.02562 * 8 6 5 42 42 H 1.09005 * 109.46971 * 60.00055 * 9 8 6 43 43 H 1.08997 * 109.47036 * 300.00369 * 9 8 6 44 44 H 0.96999 * 120.00166 * 359.97438 * 12 10 9 45 45 H 1.09004 * 110.48155 * 85.06826 * 15 13 12 46 46 H 1.09001 * 110.59996 * 322.48082 * 15 13 12 47 47 H 1.09005 * 110.03341 * 264.32198 * 16 15 13 48 48 H 1.09004 * 110.07194 * 142.92286 * 16 15 13 49 49 H 1.09000 * 110.03289 * 240.71026 * 17 16 15 50 50 H 1.08996 * 110.03704 * 119.28700 * 17 16 15 51 51 H 1.09003 * 109.46836 * 173.54212 * 20 18 17 52 52 H 1.08999 * 109.47071 * 53.55252 * 20 18 17 53 53 H 0.97000 * 120.00577 * 0.02562 * 21 20 18 54 54 H 0.97001 * 119.99885 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 2.0400 -0.7213 1.2492 6 6 1.5378 -2.1421 1.2491 7 8 0.8402 -2.5387 0.3397 8 7 1.8638 -2.9722 2.2595 9 6 1.3751 -4.3533 2.2598 10 6 1.8776 -5.0638 3.4901 11 8 2.5756 -4.4747 4.2880 12 7 1.5521 -6.3542 3.7032 13 6 2.0401 -7.0447 4.8996 14 1 2.1410 -6.3502 5.7336 15 6 3.3855 -7.7565 4.6121 16 6 3.4531 -8.8785 5.6686 17 6 2.0029 -9.1737 6.0898 18 6 1.1046 -8.2204 5.2751 19 1 0.7354 -8.7176 4.3780 20 6 -0.0634 -7.7241 6.1297 21 7 -0.9488 -8.8474 6.4463 22 6 -2.0691 -8.6430 7.2066 23 1 -2.3003 -7.6536 7.5726 24 6 -2.9078 -9.7076 7.5071 25 7 -2.6258 -10.9136 7.0616 26 14 -4.4365 -9.4286 8.5438 27 1 -4.1012 -9.6104 9.9790 28 1 -4.9388 -8.0486 8.3238 29 1 -5.4847 -10.4051 8.1529 30 1 -0.3634 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1299 1.4426 0.0005 34 1 1.6765 1.9564 -0.8899 35 1 1.6766 1.9563 0.8901 36 1 1.6767 -1.7488 -1.2493 37 1 1.6766 -0.2073 -2.1393 38 1 3.1300 -0.7207 -1.2496 39 1 1.6767 -0.2076 2.1392 40 1 3.1301 -0.7216 1.2489 41 1 2.4215 -2.6550 2.9871 42 1 1.7378 -4.8672 1.3695 43 1 0.2852 -4.3530 2.2605 44 1 0.9941 -6.8255 3.0649 45 1 4.2178 -7.0639 4.7373 46 1 3.3891 -8.1782 3.6070 47 1 4.0319 -8.5456 6.5303 48 1 3.9059 -9.7714 5.2376 49 1 1.8778 -8.9841 7.1559 50 1 1.7515 -10.2096 5.8625 51 1 -0.6206 -6.9664 5.5786 52 1 0.3204 -7.2921 7.0539 53 1 -0.7411 -9.7362 6.1180 54 1 -1.8322 -11.0583 6.5230 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272344349.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:56 Heat of formation + Delta-G solvation = -113.423990 kcal Electronic energy + Delta-G solvation = -29677.383516 eV Core-core repulsion = 25647.221486 eV Total energy + Delta-G solvation = -4030.162030 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.53474 -40.84451 -39.36237 -37.53407 -36.66470 -35.43436 -34.90498 -33.33319 -30.81443 -30.02285 -29.01231 -28.08235 -28.00909 -27.23568 -26.01040 -24.23304 -22.18726 -21.70934 -21.62795 -20.80479 -19.95743 -19.43525 -18.57294 -17.92904 -17.33170 -17.01608 -16.89636 -16.71669 -16.03593 -15.81036 -15.61106 -15.47468 -15.23697 -15.22928 -15.10720 -14.97962 -14.60459 -14.27042 -13.98242 -13.67293 -13.64711 -13.23724 -12.94680 -12.93225 -12.75902 -12.67800 -12.65287 -12.45737 -12.20935 -12.14289 -12.02811 -11.93778 -11.87296 -11.72636 -11.62694 -11.52114 -11.37683 -11.25730 -11.12395 -10.95464 -10.52827 -10.22651 -10.07103 -9.13250 -8.42367 -5.36002 1.41833 1.56695 1.64069 1.66899 1.74875 1.81513 2.42812 2.68230 3.32955 3.37421 3.55733 3.58471 3.72343 3.79398 3.88262 3.95237 4.02273 4.24896 4.28201 4.32461 4.37756 4.39406 4.41017 4.44617 4.57897 4.60892 4.63920 4.66098 4.68310 4.86440 4.86835 4.88025 4.95390 5.00646 5.05401 5.10531 5.11841 5.15749 5.18831 5.18931 5.21378 5.34946 5.39588 5.40712 5.49394 5.54848 5.55617 5.67944 6.38543 6.48416 6.49147 7.04460 7.07464 7.23685 7.97955 8.08599 9.09824 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012194 B = 0.002044 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.606047 B =13695.284576 C =15425.647911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.053 4.053 3 C -0.138 4.138 4 C -0.151 4.151 5 C -0.129 4.129 6 C 0.513 3.487 7 O -0.560 6.560 8 N -0.719 5.719 9 C 0.104 3.896 10 C 0.514 3.486 11 O -0.570 6.570 12 N -0.706 5.706 13 C 0.154 3.846 14 H 0.080 0.920 15 C -0.121 4.121 16 C -0.114 4.114 17 C -0.113 4.113 18 C -0.093 4.093 19 H 0.086 0.914 20 C 0.168 3.832 21 N -0.751 5.751 22 C -0.337 4.337 23 H 0.060 0.940 24 C -0.102 4.102 25 N -0.972 5.972 26 Si 1.129 2.871 27 H -0.284 1.284 28 H -0.276 1.276 29 H -0.291 1.291 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.051 0.949 38 H 0.055 0.945 39 H 0.109 0.891 40 H 0.114 0.886 41 H 0.415 0.585 42 H 0.113 0.887 43 H 0.102 0.898 44 H 0.415 0.585 45 H 0.071 0.929 46 H 0.083 0.917 47 H 0.069 0.931 48 H 0.081 0.919 49 H 0.049 0.951 50 H 0.061 0.939 51 H 0.013 0.987 52 H 0.009 0.991 53 H 0.363 0.637 54 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.891 19.797 -14.688 29.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.053 4.053 3 C -0.196 4.196 4 C -0.208 4.208 5 C -0.168 4.168 6 C 0.301 3.699 7 O -0.439 6.439 8 N -0.374 5.374 9 C -0.024 4.024 10 C 0.300 3.700 11 O -0.450 6.450 12 N -0.356 5.356 13 C 0.048 3.952 14 H 0.098 0.902 15 C -0.159 4.159 16 C -0.152 4.152 17 C -0.151 4.151 18 C -0.112 4.112 19 H 0.104 0.896 20 C 0.042 3.958 21 N -0.396 5.396 22 C -0.468 4.468 23 H 0.078 0.922 24 C -0.294 4.294 25 N -0.620 5.620 26 Si 0.954 3.046 27 H -0.211 1.211 28 H -0.201 1.201 29 H -0.217 1.217 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.128 0.872 40 H 0.132 0.868 41 H 0.253 0.747 42 H 0.131 0.869 43 H 0.119 0.881 44 H 0.252 0.748 45 H 0.089 0.911 46 H 0.102 0.898 47 H 0.088 0.912 48 H 0.100 0.900 49 H 0.067 0.933 50 H 0.080 0.920 51 H 0.031 0.969 52 H 0.027 0.973 53 H 0.196 0.804 54 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 14.528 19.443 -13.997 28.018 hybrid contribution 1.064 0.035 -0.479 1.168 sum 15.592 19.479 -14.476 28.846 Atomic orbital electron populations 1.22076 0.95103 1.02592 1.01223 1.20300 0.95583 0.95618 0.93823 1.21858 1.01478 0.93879 1.02343 1.22058 1.00477 1.01518 0.96747 1.21844 1.03664 0.90251 1.01065 1.21207 0.79472 0.88627 0.80558 1.90602 1.38944 1.77941 1.36447 1.45844 1.54173 1.10874 1.26499 1.21041 1.01245 0.83806 0.96270 1.20753 0.79680 0.82120 0.87397 1.90678 1.39712 1.66597 1.48003 1.45822 1.52987 1.11600 1.25230 1.21852 0.93462 0.92461 0.87414 0.90219 1.22634 0.95990 0.97172 1.00150 1.22048 0.95290 0.98953 0.98859 1.22027 0.95048 0.98849 0.99165 1.22287 0.94199 0.95894 0.98839 0.89620 1.20704 0.90050 0.89725 0.95352 1.42485 1.26851 1.06879 1.63378 1.20374 1.02601 0.96303 1.27554 0.92156 1.27177 1.06278 0.92269 1.03627 1.70965 1.28855 1.22446 1.39705 0.82604 0.72244 0.75279 0.74513 1.21130 1.20127 1.21677 0.92930 0.92963 0.92179 0.91637 0.92355 0.91926 0.92103 0.93021 0.92587 0.87235 0.86811 0.74708 0.86925 0.88062 0.74780 0.91054 0.89820 0.91240 0.89987 0.93257 0.92047 0.96879 0.97312 0.80415 0.94403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 8.18 71.98 0.59 -1.96 16 2 C -0.05 -0.71 0.77 -52.18 -0.04 -0.75 16 3 C -0.14 -1.33 8.47 71.98 0.61 -0.72 16 4 C -0.15 -2.35 8.18 71.98 0.59 -1.76 16 5 C -0.13 -1.54 4.77 29.85 0.14 -1.40 16 6 C 0.51 9.21 7.24 87.66 0.63 9.85 16 7 O -0.56 -13.39 11.35 -3.03 -0.03 -13.42 16 8 N -0.72 -12.28 5.53 -466.80 -2.58 -14.86 16 9 C 0.10 1.79 6.15 85.63 0.53 2.32 16 10 C 0.51 11.01 7.90 87.65 0.69 11.71 16 11 O -0.57 -15.67 15.31 -3.03 -0.05 -15.72 16 12 N -0.71 -14.37 5.18 -436.46 -2.26 -16.63 16 13 C 0.15 3.74 2.69 46.28 0.12 3.87 16 14 H 0.08 2.32 7.47 -2.39 -0.02 2.30 16 15 C -0.12 -2.42 6.51 31.67 0.21 -2.21 16 16 C -0.11 -2.39 6.80 31.31 0.21 -2.17 16 17 C -0.11 -3.19 6.05 31.32 0.19 -3.00 16 18 C -0.09 -2.71 2.55 -9.73 -0.02 -2.73 16 19 H 0.09 2.40 8.02 -2.38 -0.02 2.38 16 20 C 0.17 6.72 5.57 86.38 0.48 7.20 16 21 N -0.75 -37.75 5.44 -343.47 -1.87 -39.62 16 22 C -0.34 -19.23 9.99 84.03 0.84 -18.39 16 23 H 0.06 3.42 7.83 -2.91 -0.02 3.39 16 24 C -0.10 -5.95 5.50 84.86 0.47 -5.48 16 25 N -0.97 -60.47 13.70 21.65 0.30 -60.17 16 26 Si 1.13 52.38 29.92 68.60 2.05 54.43 16 27 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 28 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 29 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 1.32 5.51 -2.38 -0.01 1.31 16 33 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 36 H 0.06 1.26 5.51 -2.39 -0.01 1.24 16 37 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 39 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.11 0.93 8.14 -2.38 -0.02 0.91 16 41 H 0.41 6.68 7.44 -92.71 -0.69 5.99 16 42 H 0.11 1.65 8.14 -2.38 -0.02 1.63 16 43 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.42 6.76 8.57 -92.71 -0.79 5.96 16 45 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 48 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 49 H 0.05 1.62 7.77 -2.39 -0.02 1.60 16 50 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 51 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 52 H 0.01 0.38 8.05 -2.39 -0.02 0.36 16 53 H 0.36 18.60 6.35 -92.71 -0.59 18.01 16 54 H 0.25 15.11 6.77 -92.71 -0.63 14.48 16 Total: -1.00 -73.35 422.77 0.76 -72.58 By element: Atomic # 1 Polarization: 40.07 SS G_CDS: -1.03 Total: 39.04 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: 6.24 Total: -5.63 kcal Atomic # 7 Polarization: -124.87 SS G_CDS: -6.41 Total: -131.28 kcal Atomic # 8 Polarization: -29.06 SS G_CDS: -0.08 Total: -29.14 kcal Atomic # 14 Polarization: 52.38 SS G_CDS: 2.05 Total: 54.43 kcal Total: -73.35 0.76 -72.58 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272344349.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.841 kcal (2) G-P(sol) polarization free energy of solvation -73.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds