Wall clock time and date at job start Sat Apr 11 2020 05:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47339 * 2 1 4 4 C 1.52998 * 109.47318 * 239.99706 * 2 1 3 5 5 C 1.53004 * 109.46695 * 119.99741 * 2 1 3 6 6 C 1.50701 * 109.47125 * 60.00147 * 5 2 1 7 7 O 1.21288 * 120.00085 * 359.97438 * 6 5 2 8 8 N 1.34775 * 120.00061 * 179.97438 * 6 5 2 9 9 C 1.46498 * 120.00073 * 179.97438 * 8 6 5 10 10 C 1.50703 * 109.47367 * 180.02562 * 9 8 6 11 11 O 1.21275 * 119.99637 * 0.02562 * 10 9 8 12 12 N 1.34773 * 119.99955 * 179.97438 * 10 9 8 13 13 C 1.46962 * 120.65762 * 5.20084 * 12 10 9 14 14 C 1.53195 * 108.88644 * 233.53062 * 13 12 10 15 15 C 1.53034 * 109.31188 * 305.43762 * 14 13 12 16 16 C 1.53042 * 109.53916 * 61.36670 * 15 14 13 17 17 C 1.46924 * 120.62871 * 185.37376 * 12 10 9 18 18 H 1.09008 * 109.58903 * 246.32418 * 17 12 10 19 19 C 1.52995 * 109.58816 * 6.60881 * 17 12 10 20 20 N 1.46498 * 109.47430 * 178.01314 * 19 17 12 21 21 C 1.36936 * 120.00379 * 175.05150 * 20 19 17 22 22 H 1.08008 * 119.99507 * 359.97438 * 21 20 19 23 23 C 1.38811 * 120.00192 * 179.97438 * 21 20 19 24 24 N 1.31613 * 120.00014 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99995 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47126 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47112 * 120.00132 * 25 23 21 28 28 H 1.48500 * 109.47248 * 240.00281 * 25 23 21 29 29 H 1.09004 * 109.47265 * 300.00098 * 1 2 3 30 30 H 1.09000 * 109.47084 * 59.99901 * 1 2 3 31 31 H 1.08995 * 109.47564 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47081 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47114 * 300.00080 * 3 2 1 34 34 H 1.09004 * 109.47022 * 59.99753 * 3 2 1 35 35 H 1.09000 * 109.47249 * 300.00766 * 4 2 1 36 36 H 1.09000 * 109.46723 * 60.00171 * 4 2 1 37 37 H 1.08998 * 109.47226 * 180.02562 * 4 2 1 38 38 H 1.08996 * 109.47278 * 300.00360 * 5 2 1 39 39 H 1.08998 * 109.47044 * 179.97438 * 5 2 1 40 40 H 0.96996 * 119.99926 * 0.02562 * 8 6 5 41 41 H 1.09000 * 109.47358 * 60.00237 * 9 8 6 42 42 H 1.09005 * 109.47324 * 300.00164 * 9 8 6 43 43 H 1.08996 * 109.47097 * 113.74422 * 13 12 10 44 44 H 1.09002 * 109.59091 * 353.38966 * 13 12 10 45 45 H 1.08997 * 109.49772 * 185.48953 * 14 13 12 46 46 H 1.09003 * 109.52321 * 65.40752 * 14 13 12 47 47 H 1.09004 * 109.46124 * 301.34782 * 15 14 13 48 48 H 1.08994 * 109.46177 * 181.38479 * 15 14 13 49 49 H 1.08999 * 109.50363 * 178.68541 * 16 15 14 50 50 H 1.08998 * 109.49967 * 58.58421 * 16 15 14 51 51 H 1.08999 * 109.47401 * 58.01039 * 19 17 12 52 52 H 1.09006 * 109.47126 * 298.01338 * 19 17 12 53 53 H 0.96999 * 119.99741 * 354.76781 * 20 19 17 54 54 H 0.97008 * 119.99928 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7212 1.2493 6 6 1.5375 -2.1420 1.2493 7 8 0.8399 -2.5386 0.3399 8 7 1.8634 -2.9720 2.2599 9 6 1.3746 -4.3531 2.2602 10 6 1.8769 -5.0635 3.4907 11 8 2.5742 -4.4741 4.2890 12 7 1.5505 -6.3535 3.7045 13 6 0.8019 -7.1144 2.6943 14 6 -0.4360 -7.7303 3.3540 15 6 -0.0046 -8.5543 4.5693 16 6 0.6826 -7.6424 5.5883 17 6 1.9330 -7.0254 4.9538 18 1 2.6589 -7.8099 4.7395 19 6 2.5474 -6.0072 5.9164 20 7 2.8844 -6.6700 7.1787 21 6 3.5421 -5.9786 8.1609 22 1 3.8128 -4.9448 8.0047 23 6 3.8609 -6.6065 9.3571 24 7 3.5305 -7.8662 9.5476 25 14 4.7587 -5.6636 10.6966 26 1 5.0134 -4.2742 10.2382 27 1 3.9249 -5.6340 11.9250 28 1 6.0512 -6.3327 10.9916 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7217 -1.2489 38 1 1.6765 -0.2074 2.1393 39 1 3.1299 -0.7217 1.2492 40 1 2.4210 -2.6548 2.9874 41 1 1.7373 -4.8671 1.3701 42 1 0.2846 -4.3527 2.2609 43 1 1.4344 -7.9063 2.2934 44 1 0.4932 -6.4476 1.8891 45 1 -0.9460 -8.3759 2.6392 46 1 -1.1113 -6.9366 3.6737 47 1 0.6896 -9.3326 4.2524 48 1 -0.8810 -9.0137 5.0262 49 1 0.9687 -8.2254 6.4636 50 1 -0.0028 -6.8492 5.8871 51 1 1.8310 -5.2078 6.1057 52 1 3.4510 -5.5879 5.4737 53 1 2.6379 -7.5974 7.3204 54 1 3.7536 -8.3051 10.3834 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273025025.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:02 Heat of formation + Delta-G solvation = -82.302477 kcal Electronic energy + Delta-G solvation = -30744.064672 eV Core-core repulsion = 26715.252172 eV Total energy + Delta-G solvation = -4028.812500 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.83774 -40.96372 -38.66471 -37.50289 -36.65244 -35.43864 -34.05449 -33.73695 -31.53457 -30.43525 -28.28300 -28.05693 -27.99010 -27.29378 -25.54145 -24.92461 -22.72627 -22.00920 -21.58470 -20.43220 -19.75353 -19.14937 -18.38627 -17.55943 -17.30628 -17.14465 -16.61529 -16.26763 -16.11287 -15.55494 -15.43597 -15.38957 -15.25378 -15.15922 -14.91157 -14.72011 -14.65535 -14.34471 -14.05005 -13.65622 -13.63868 -13.52532 -13.07228 -12.92843 -12.91378 -12.86243 -12.66777 -12.63660 -12.19435 -12.18823 -12.08561 -12.02164 -12.00800 -11.84396 -11.61500 -11.60126 -11.50710 -11.40667 -11.00545 -10.50322 -10.28552 -10.13389 -9.65240 -8.96430 -7.96693 -5.24456 1.44440 1.45508 1.47090 1.56455 1.65432 1.68072 2.32214 2.56272 3.32999 3.36504 3.72323 3.79017 3.85542 3.89258 3.94705 3.96716 4.09778 4.13135 4.23741 4.27355 4.30044 4.37444 4.41359 4.60181 4.62858 4.66345 4.67216 4.70022 4.80741 4.87562 4.90195 4.92130 5.02337 5.04040 5.10019 5.12228 5.16315 5.20718 5.21135 5.26289 5.30311 5.36303 5.40581 5.46053 5.47461 5.57191 5.62422 5.69452 6.25749 6.36374 6.49759 7.06042 7.23840 7.32600 8.07539 8.33946 9.27109 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011243 B = 0.002616 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2489.877942 B =10700.377091 C =12847.611908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.052 4.052 3 C -0.139 4.139 4 C -0.150 4.150 5 C -0.132 4.132 6 C 0.516 3.484 7 O -0.556 6.556 8 N -0.722 5.722 9 C 0.111 3.889 10 C 0.498 3.502 11 O -0.560 6.560 12 N -0.599 5.599 13 C 0.098 3.902 14 C -0.129 4.129 15 C -0.116 4.116 16 C -0.121 4.121 17 C 0.149 3.851 18 H 0.070 0.930 19 C 0.173 3.827 20 N -0.746 5.746 21 C -0.240 4.240 22 H 0.064 0.936 23 C -0.074 4.074 24 N -0.968 5.968 25 Si 0.973 3.027 26 H -0.271 1.271 27 H -0.290 1.290 28 H -0.289 1.289 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.412 0.588 41 H 0.113 0.887 42 H 0.109 0.891 43 H 0.088 0.912 44 H 0.112 0.888 45 H 0.108 0.892 46 H 0.062 0.938 47 H 0.072 0.928 48 H 0.074 0.926 49 H 0.057 0.943 50 H 0.050 0.950 51 H 0.003 0.997 52 H 0.036 0.964 53 H 0.373 0.627 54 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.569 9.368 -24.140 27.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.052 4.052 3 C -0.197 4.197 4 C -0.208 4.208 5 C -0.172 4.172 6 C 0.305 3.695 7 O -0.436 6.436 8 N -0.377 5.377 9 C -0.016 4.016 10 C 0.286 3.714 11 O -0.438 6.438 12 N -0.332 5.332 13 C -0.023 4.023 14 C -0.167 4.167 15 C -0.153 4.153 16 C -0.159 4.159 17 C 0.046 3.954 18 H 0.088 0.912 19 C 0.047 3.953 20 N -0.391 5.391 21 C -0.372 4.372 22 H 0.082 0.918 23 C -0.267 4.267 24 N -0.619 5.619 25 Si 0.802 3.198 26 H -0.196 1.196 27 H -0.217 1.217 28 H -0.216 1.216 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.249 0.751 41 H 0.131 0.869 42 H 0.126 0.874 43 H 0.107 0.893 44 H 0.130 0.870 45 H 0.126 0.874 46 H 0.081 0.919 47 H 0.090 0.910 48 H 0.093 0.907 49 H 0.075 0.925 50 H 0.068 0.932 51 H 0.021 0.979 52 H 0.054 0.946 53 H 0.206 0.794 54 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.620 9.547 -24.329 27.520 hybrid contribution 0.737 -0.018 1.747 1.896 sum -7.883 9.529 -22.581 25.746 Atomic orbital electron populations 1.22062 0.94745 1.02774 1.01237 1.20293 0.95862 0.95422 0.93649 1.21868 1.01353 0.94082 1.02363 1.22057 1.00334 1.01659 0.96711 1.21861 1.03473 0.90634 1.01195 1.21090 0.79482 0.88427 0.80498 1.90575 1.38925 1.77896 1.36174 1.45956 1.54111 1.11135 1.26490 1.21101 1.01166 0.83449 0.95874 1.21055 0.80189 0.82216 0.87901 1.90809 1.38913 1.66738 1.47376 1.48173 1.55783 1.10698 1.18571 1.22182 0.93259 0.96937 0.89880 1.21916 0.96932 1.00087 0.97715 1.21533 1.00668 0.97575 0.95533 1.21827 0.95985 0.99297 0.98808 1.21249 0.96313 0.94319 0.83544 0.91193 1.21138 0.97191 0.92151 0.84831 1.42756 1.69344 1.12710 1.14293 1.19547 1.27924 0.95080 0.94648 0.91761 1.25532 1.03429 0.97294 1.00398 1.69808 1.54084 1.11788 1.26201 0.85071 0.77709 0.78000 0.78987 1.19581 1.21669 1.21609 0.93061 0.92749 0.91851 0.91953 0.92093 0.92060 0.91832 0.92772 0.92931 0.87514 0.87345 0.75053 0.86944 0.87354 0.89340 0.87036 0.87412 0.91882 0.90970 0.90709 0.92474 0.93161 0.97936 0.94605 0.79370 0.93898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 8.18 71.98 0.59 -1.95 16 2 C -0.05 -0.77 0.77 -52.18 -0.04 -0.81 16 3 C -0.14 -1.59 8.47 71.98 0.61 -0.98 16 4 C -0.15 -2.48 8.18 71.98 0.59 -1.89 16 5 C -0.13 -1.94 4.77 29.85 0.14 -1.80 16 6 C 0.52 10.23 7.24 87.66 0.63 10.87 16 7 O -0.56 -13.30 11.35 -3.06 -0.03 -13.33 16 8 N -0.72 -14.82 5.53 -466.77 -2.58 -17.40 16 9 C 0.11 2.19 4.51 85.63 0.39 2.58 16 10 C 0.50 13.69 7.60 87.66 0.67 14.36 16 11 O -0.56 -20.48 11.22 -3.01 -0.03 -20.52 16 12 N -0.60 -15.31 2.98 -794.94 -2.37 -17.67 16 13 C 0.10 1.52 6.35 86.36 0.55 2.07 16 14 C -0.13 -1.91 6.08 30.67 0.19 -1.72 16 15 C -0.12 -2.39 5.88 30.62 0.18 -2.21 16 16 C -0.12 -3.76 5.09 30.67 0.16 -3.60 16 17 C 0.15 5.06 3.10 44.97 0.14 5.20 16 18 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 19 C 0.17 7.87 4.14 86.38 0.36 8.23 16 20 N -0.75 -40.59 5.38 -343.45 -1.85 -42.44 16 21 C -0.24 -14.38 9.99 84.03 0.84 -13.54 16 22 H 0.06 3.85 7.83 -2.91 -0.02 3.82 16 23 C -0.07 -4.45 5.50 84.86 0.47 -3.99 16 24 N -0.97 -60.47 13.06 21.65 0.28 -60.19 16 25 Si 0.97 48.02 29.55 68.60 2.03 50.05 16 26 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 27 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 28 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 29 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 1.35 5.51 -2.39 -0.01 1.34 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 35 H 0.06 1.33 5.51 -2.39 -0.01 1.32 16 36 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.41 8.91 7.44 -92.71 -0.69 8.22 16 41 H 0.11 1.84 7.73 -2.39 -0.02 1.82 16 42 H 0.11 1.89 7.90 -2.38 -0.02 1.88 16 43 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.11 1.15 5.93 -2.39 -0.01 1.14 16 45 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 48 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.06 2.11 6.87 -2.39 -0.02 2.09 16 50 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 51 H 0.00 0.14 7.22 -2.39 -0.02 0.12 16 52 H 0.04 1.79 6.26 -2.38 -0.01 1.78 16 53 H 0.37 20.81 6.33 -92.71 -0.59 20.22 16 54 H 0.25 15.13 8.31 -92.70 -0.77 14.36 16 Total: -1.00 -75.34 409.36 1.51 -73.84 By element: Atomic # 1 Polarization: 37.26 SS G_CDS: -0.39 Total: 36.87 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: 6.45 Total: 10.79 kcal Atomic # 7 Polarization: -131.19 SS G_CDS: -6.51 Total: -137.70 kcal Atomic # 8 Polarization: -33.78 SS G_CDS: -0.07 Total: -33.85 kcal Atomic # 14 Polarization: 48.02 SS G_CDS: 2.03 Total: 50.05 kcal Total: -75.34 1.51 -73.84 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273025025.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.467 kcal (2) G-P(sol) polarization free energy of solvation -75.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds