Wall clock time and date at job start Sat Apr 11 2020 05:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47211 * 2 1 4 4 C 1.53005 * 109.47114 * 119.99940 * 2 1 3 5 5 C 1.52993 * 109.47357 * 175.00276 * 4 2 1 6 6 C 1.50697 * 109.47203 * 179.97438 * 5 4 2 7 7 O 1.21280 * 120.00258 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00083 * 179.97438 * 6 5 4 9 9 C 1.46503 * 119.99965 * 180.02562 * 8 6 5 10 10 C 1.50701 * 109.47076 * 180.02562 * 9 8 6 11 11 O 1.21282 * 119.99837 * 359.97438 * 10 9 8 12 12 N 1.34770 * 120.00056 * 180.02562 * 10 9 8 13 13 C 1.46928 * 120.63207 * 359.71499 * 12 10 9 14 14 C 1.53623 * 108.54777 * 126.36761 * 13 12 10 15 15 C 1.53048 * 109.23535 * 54.85880 * 14 13 12 16 16 N 1.46503 * 109.45619 * 178.49054 * 15 14 13 17 17 C 1.46507 * 119.99879 * 60.06843 * 16 15 14 18 18 C 1.36934 * 120.00056 * 240.06877 * 16 15 14 19 19 H 1.07999 * 120.00057 * 20.39964 * 18 16 15 20 20 C 1.38817 * 119.99684 * 200.40385 * 18 16 15 21 21 N 1.31611 * 120.00549 * 14.97513 * 20 18 16 22 22 Si 1.86802 * 119.99708 * 194.97561 * 20 18 16 23 23 H 1.48497 * 109.47312 * 85.00094 * 22 20 18 24 24 H 1.48503 * 109.47204 * 205.00217 * 22 20 18 25 25 H 1.48503 * 109.47091 * 325.00290 * 22 20 18 26 26 C 1.53042 * 109.53945 * 298.50991 * 15 14 13 27 27 C 1.46927 * 120.63302 * 179.97438 * 12 10 9 28 28 H 1.08996 * 109.47466 * 300.00601 * 1 2 3 29 29 H 1.09002 * 109.46721 * 60.00083 * 1 2 3 30 30 H 1.08993 * 109.47049 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47530 * 239.99952 * 2 1 3 32 32 H 1.08995 * 109.46858 * 299.99641 * 3 2 1 33 33 H 1.08996 * 109.47117 * 60.00087 * 3 2 1 34 34 H 1.08999 * 109.46728 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.46748 * 54.99854 * 4 2 1 36 36 H 1.08999 * 109.46671 * 294.99934 * 4 2 1 37 37 H 1.09000 * 109.47801 * 59.99598 * 5 4 2 38 38 H 1.09008 * 109.47035 * 300.00083 * 5 4 2 39 39 H 0.96996 * 120.00169 * 0.02562 * 8 6 5 40 40 H 1.08999 * 109.46768 * 300.00029 * 9 8 6 41 41 H 1.08998 * 109.47316 * 60.00408 * 9 8 6 42 42 H 1.08998 * 109.58661 * 246.20564 * 13 12 10 43 43 H 1.09004 * 109.58307 * 6.62675 * 13 12 10 44 44 H 1.08997 * 109.63180 * 294.87025 * 14 13 12 45 45 H 1.08992 * 109.43484 * 174.72227 * 14 13 12 46 46 H 1.08995 * 109.46287 * 58.53591 * 15 14 13 47 47 H 1.08997 * 109.47144 * 95.11099 * 17 16 15 48 48 H 1.08998 * 109.46941 * 215.10673 * 17 16 15 49 49 H 1.09001 * 109.47169 * 335.11023 * 17 16 15 50 50 H 0.96998 * 120.00536 * 179.97438 * 21 20 18 51 51 H 1.09008 * 109.49447 * 301.41704 * 26 15 14 52 52 H 1.08992 * 109.52685 * 181.33657 * 26 15 14 53 53 H 1.09005 * 109.58322 * 353.37279 * 27 12 10 54 54 H 1.09005 * 109.58580 * 113.65276 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5647 -0.8310 1.1881 6 6 4.0671 -1.5408 2.4189 7 8 3.2827 -1.9219 3.2618 8 7 5.3880 -1.7532 2.5825 9 6 5.8762 -2.4437 3.7787 10 6 7.3782 -2.5517 3.7185 11 8 7.9813 -2.0971 2.7695 12 7 8.0511 -3.1544 4.7186 13 6 7.3349 -3.7055 5.8772 14 6 7.7459 -5.1754 6.0517 15 6 9.2703 -5.2639 6.1553 16 7 9.6654 -6.6600 6.3581 17 6 9.3204 -7.6718 5.3562 18 6 10.3571 -7.0192 7.4839 19 1 10.3313 -6.3862 8.3585 20 6 11.0916 -8.1970 7.5009 21 7 11.3701 -8.8154 6.3730 22 14 11.6849 -8.9043 9.1249 23 1 10.6095 -9.7334 9.7261 24 1 12.8855 -9.7459 8.8892 25 1 12.0312 -7.7959 10.0505 26 6 9.9024 -4.7374 4.8648 27 6 9.5153 -3.2679 4.6739 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6053 -1.7198 1.2952 36 1 1.7516 -0.1583 2.1369 37 1 3.9995 0.1675 1.1421 38 1 3.8532 -1.3940 0.3003 39 1 6.0153 -1.4488 1.9082 40 1 5.5881 -1.8805 4.6663 41 1 5.4414 -3.4422 3.8248 42 1 7.5979 -3.1410 6.7717 43 1 6.2602 -3.6430 5.7059 44 1 7.4052 -5.7553 5.1940 45 1 7.2958 -5.5722 6.9616 46 1 9.6124 -4.6639 6.9984 47 1 10.1589 -7.8075 4.6732 48 1 9.1010 -8.6162 5.8543 49 1 8.4446 -7.3445 4.7959 50 1 11.8836 -9.6382 6.3849 51 1 9.5414 -5.3215 4.0182 52 1 10.9871 -4.8225 4.9294 53 1 9.8797 -2.9166 3.7085 54 1 9.9529 -2.6663 5.4706 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277434726.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:18 Heat of formation + Delta-G solvation = -89.339789 kcal Electronic energy + Delta-G solvation = -29768.826077 eV Core-core repulsion = 25739.708416 eV Total energy + Delta-G solvation = -4029.117661 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.55978 -40.57274 -39.02418 -37.47111 -36.76297 -35.53872 -33.99965 -32.46606 -31.90526 -31.48816 -28.96744 -28.03856 -27.96208 -26.33005 -25.09320 -24.11139 -23.62027 -21.51314 -21.32814 -20.74508 -19.89675 -18.76308 -18.59962 -17.78613 -17.18175 -17.15692 -16.90524 -16.48128 -16.24164 -15.74570 -15.66381 -15.20119 -15.10377 -15.00041 -14.83096 -14.56256 -14.43452 -14.21789 -13.93137 -13.78833 -13.57045 -13.31477 -13.19770 -13.10261 -13.02751 -12.79645 -12.64165 -12.60681 -12.35330 -12.21015 -12.19668 -12.06717 -11.81682 -11.66966 -11.63221 -11.48509 -11.41324 -11.25949 -11.01278 -10.93924 -10.60307 -10.24133 -9.73782 -8.79004 -7.80790 -5.26403 1.41012 1.47495 1.49135 1.56727 1.62648 1.69009 2.32956 2.52017 3.29683 3.32537 3.61360 3.74056 3.88097 3.91130 4.01735 4.09437 4.16862 4.20480 4.25011 4.30546 4.33369 4.39247 4.41093 4.55123 4.58457 4.69005 4.70697 4.79406 4.82478 4.84374 4.89334 4.90768 4.98590 4.98960 5.07733 5.09872 5.17973 5.20964 5.24347 5.26493 5.35175 5.37871 5.48743 5.52459 5.57353 5.58570 5.66924 5.72195 6.28912 6.34057 6.47580 6.94797 7.16528 7.18944 7.90434 8.33977 9.22568 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.029135 B = 0.001739 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.823583 B =16097.159798 C =16430.727023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 C -0.151 4.151 4 C -0.096 4.096 5 C -0.135 4.135 6 C 0.512 3.488 7 O -0.580 6.580 8 N -0.717 5.717 9 C 0.103 3.897 10 C 0.512 3.488 11 O -0.574 6.574 12 N -0.600 5.600 13 C 0.112 3.888 14 C -0.138 4.138 15 C 0.172 3.828 16 N -0.611 5.611 17 C 0.183 3.817 18 C -0.258 4.258 19 H 0.076 0.924 20 C -0.057 4.057 21 N -0.941 5.941 22 Si 0.966 3.034 23 H -0.287 1.287 24 H -0.300 1.300 25 H -0.267 1.267 26 C -0.133 4.133 27 C 0.125 3.875 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.416 0.584 40 H 0.113 0.887 41 H 0.103 0.897 42 H 0.095 0.905 43 H 0.109 0.891 44 H 0.053 0.947 45 H 0.077 0.923 46 H 0.065 0.935 47 H -0.003 1.003 48 H 0.012 0.988 49 H 0.026 0.974 50 H 0.246 0.754 51 H 0.042 0.958 52 H 0.054 0.946 53 H 0.081 0.919 54 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.776 20.511 -10.661 29.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.113 4.113 3 C -0.208 4.208 4 C -0.134 4.134 5 C -0.174 4.174 6 C 0.301 3.699 7 O -0.460 6.460 8 N -0.373 5.373 9 C -0.024 4.024 10 C 0.301 3.699 11 O -0.455 6.455 12 N -0.332 5.332 13 C -0.010 4.010 14 C -0.178 4.178 15 C 0.065 3.935 16 N -0.333 5.333 17 C 0.038 3.962 18 C -0.388 4.388 19 H 0.094 0.906 20 C -0.251 4.251 21 N -0.589 5.589 22 Si 0.795 3.205 23 H -0.214 1.214 24 H -0.227 1.227 25 H -0.192 1.192 26 C -0.173 4.173 27 C 0.002 3.998 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.254 0.746 40 H 0.130 0.870 41 H 0.121 0.879 42 H 0.113 0.887 43 H 0.127 0.873 44 H 0.071 0.929 45 H 0.095 0.905 46 H 0.084 0.916 47 H 0.015 0.985 48 H 0.031 0.969 49 H 0.044 0.956 50 H 0.055 0.945 51 H 0.061 0.939 52 H 0.072 0.928 53 H 0.100 0.900 54 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.903 20.322 -10.548 29.065 hybrid contribution 1.195 -1.151 0.520 1.739 sum -16.708 19.171 -10.029 27.336 Atomic orbital electron populations 1.21842 0.95143 1.01720 1.01942 1.21130 0.95925 0.96686 0.97601 1.21926 1.01588 0.95426 1.01904 1.21362 0.92991 1.00745 0.98307 1.21794 0.97798 1.02707 0.95146 1.21364 0.81069 0.78634 0.88849 1.90699 1.56128 1.52996 1.46195 1.45847 1.08264 1.59605 1.23548 1.21112 0.89674 1.00525 0.91063 1.20734 0.90238 0.77313 0.81643 1.90655 1.70524 1.50153 1.34124 1.48157 1.07721 1.56180 1.21180 1.22086 0.97617 0.93126 0.88199 1.22387 0.96987 0.96169 1.02218 1.20549 0.93085 0.84521 0.95313 1.44218 1.64018 1.03177 1.21909 1.20391 0.94356 0.90673 0.90751 1.19619 1.22081 1.05771 0.91361 0.90585 1.25719 0.99330 1.00556 0.99537 1.70254 1.43153 1.19518 1.25940 0.85289 0.76860 0.78312 0.80025 1.21442 1.22653 1.19178 1.22289 1.00449 0.95357 0.99201 1.21535 0.79220 0.95812 1.03265 0.93039 0.91916 0.92961 0.90321 0.92164 0.93066 0.91722 0.92642 0.92516 0.86578 0.86835 0.74550 0.86974 0.87938 0.88712 0.87310 0.92874 0.90454 0.91631 0.98465 0.96911 0.95571 0.94521 0.93946 0.92755 0.90037 0.89659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.19 71.98 0.66 -0.86 16 2 C -0.09 -0.94 2.92 -10.79 -0.03 -0.97 16 3 C -0.15 -1.27 8.95 71.98 0.64 -0.63 16 4 C -0.10 -1.31 3.97 30.59 0.12 -1.19 16 5 C -0.14 -1.59 5.45 29.84 0.16 -1.43 16 6 C 0.51 9.80 7.83 87.66 0.69 10.49 16 7 O -0.58 -15.48 15.98 -3.03 -0.05 -15.53 16 8 N -0.72 -13.05 5.53 -466.78 -2.58 -15.63 16 9 C 0.10 1.96 4.50 85.63 0.39 2.35 16 10 C 0.51 12.14 7.77 87.66 0.68 12.82 16 11 O -0.57 -16.75 15.08 -3.03 -0.05 -16.79 16 12 N -0.60 -14.17 2.97 -818.12 -2.43 -16.60 16 13 C 0.11 2.24 6.37 86.51 0.55 2.80 16 14 C -0.14 -3.92 5.34 30.82 0.16 -3.76 16 15 C 0.17 6.26 2.55 45.02 0.11 6.38 16 16 N -0.61 -29.29 2.81 -702.60 -1.98 -31.26 16 17 C 0.18 9.04 8.03 127.77 1.03 10.07 16 18 C -0.26 -13.71 9.61 84.04 0.81 -12.90 16 19 H 0.08 3.85 7.81 -2.91 -0.02 3.83 16 20 C -0.06 -3.14 5.06 84.86 0.43 -2.71 16 21 N -0.94 -55.83 10.67 21.65 0.23 -55.60 16 22 Si 0.97 44.62 29.58 68.60 2.03 46.65 16 23 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 24 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 26 C -0.13 -4.55 5.34 30.66 0.16 -4.39 16 27 C 0.12 3.35 6.43 86.35 0.55 3.90 16 28 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.06 0.44 6.56 -2.39 -0.02 0.43 16 35 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 36 H 0.06 0.93 8.10 -2.39 -0.02 0.91 16 37 H 0.12 0.94 6.56 -2.39 -0.02 0.92 16 38 H 0.11 0.95 8.14 -2.38 -0.02 0.94 16 39 H 0.42 6.98 7.44 -92.71 -0.69 6.29 16 40 H 0.11 1.85 7.93 -2.39 -0.02 1.83 16 41 H 0.10 1.94 7.70 -2.39 -0.02 1.92 16 42 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.11 1.64 5.93 -2.38 -0.01 1.63 16 44 H 0.05 1.63 6.72 -2.39 -0.02 1.61 16 45 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 46 H 0.07 2.36 7.85 -2.39 -0.02 2.34 16 47 H 0.00 -0.16 7.40 -2.39 -0.02 -0.18 16 48 H 0.01 0.66 7.22 -2.39 -0.02 0.65 16 49 H 0.03 1.11 6.47 -2.39 -0.02 1.09 16 50 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 51 H 0.04 1.58 7.72 -2.38 -0.02 1.56 16 52 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 53 H 0.08 2.32 7.01 -2.38 -0.02 2.30 16 54 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 Total: -1.00 -70.57 417.64 2.49 -68.09 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.18 Total: 16.71 kcal Atomic # 6 Polarization: 12.83 SS G_CDS: 7.12 Total: 19.96 kcal Atomic # 7 Polarization: -112.33 SS G_CDS: -6.75 Total: -119.09 kcal Atomic # 8 Polarization: -32.23 SS G_CDS: -0.09 Total: -32.32 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -70.57 2.49 -68.09 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277434726.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.253 kcal (2) G-P(sol) polarization free energy of solvation -70.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds