Wall clock time and date at job start Sat Apr 11 2020 05:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.52992 * 109.47482 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47482 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47212 * 180.02562 * 5 4 3 7 7 O 1.21279 * 120.00251 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00115 * 180.02562 * 6 5 4 9 9 C 1.46931 * 120.63134 * 359.72158 * 8 6 5 10 10 C 1.52762 * 109.00886 * 233.58589 * 9 8 6 11 11 C 1.53046 * 109.37988 * 305.58535 * 10 9 8 12 12 H 1.08997 * 109.45707 * 301.21916 * 11 10 9 13 13 N 1.46900 * 109.45576 * 181.25984 * 11 10 9 14 14 C 1.46896 * 110.99907 * 84.93231 * 13 11 10 15 15 C 1.50705 * 109.47385 * 179.97438 * 14 13 11 16 16 O 1.21294 * 119.99614 * 0.02562 * 15 14 13 17 17 N 1.34775 * 120.00129 * 179.97438 * 15 14 13 18 18 C 1.37095 * 119.99735 * 180.02562 * 17 15 14 19 19 H 1.08001 * 120.00034 * 0.02562 * 18 17 15 20 20 C 1.38952 * 120.00004 * 180.02562 * 18 17 15 21 21 N 1.31410 * 119.99833 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00165 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46952 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47308 * 119.99654 * 22 20 18 25 25 H 1.48504 * 109.46675 * 239.99663 * 22 20 18 26 26 C 1.53035 * 109.53816 * 61.23972 * 11 10 9 27 27 C 1.46918 * 120.63470 * 179.97438 * 8 6 5 28 28 H 1.09000 * 109.58712 * 6.58196 * 27 8 6 29 29 C 1.53001 * 109.58856 * 246.15753 * 27 8 6 30 30 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 31 31 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 33 33 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 34 34 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 35 35 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 36 36 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 37 37 H 1.09002 * 109.47103 * 300.00247 * 4 3 2 38 38 H 1.09001 * 109.47066 * 60.00169 * 4 3 2 39 39 H 1.09002 * 109.47153 * 300.00216 * 5 4 3 40 40 H 1.09001 * 109.47289 * 60.00300 * 5 4 3 41 41 H 1.09008 * 109.58567 * 353.41427 * 9 8 6 42 42 H 1.08990 * 109.59351 * 113.83954 * 9 8 6 43 43 H 1.08995 * 109.56790 * 185.54661 * 10 9 8 44 44 H 1.08999 * 109.38786 * 65.50748 * 10 9 8 45 45 H 1.00907 * 110.99730 * 208.88217 * 13 11 10 46 46 H 1.09005 * 109.47405 * 299.99813 * 14 13 11 47 47 H 1.09001 * 109.47250 * 59.99640 * 14 13 11 48 48 H 0.97001 * 120.00297 * 0.02562 * 17 15 14 49 49 H 0.96995 * 119.99807 * 180.02562 * 21 20 18 50 50 H 1.08999 * 109.49925 * 178.68217 * 26 11 10 51 51 H 1.09010 * 109.52564 * 58.60470 * 26 11 10 52 52 H 1.08998 * 109.47272 * 60.00081 * 29 27 8 53 53 H 1.09007 * 109.47221 * 179.97438 * 29 27 8 54 54 H 1.09003 * 109.47032 * 299.99561 * 29 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8851 -0.0013 6 6 5.5869 2.8851 -0.0026 7 8 6.1934 1.8348 -0.0024 8 7 6.2608 4.0523 -0.0028 9 6 5.5402 5.3328 -0.0079 10 6 6.0472 6.1844 -1.1704 11 6 7.5688 6.3194 -1.0752 12 1 7.8337 6.7772 -0.1222 13 7 8.0549 7.1630 -2.1751 14 6 7.9681 8.5869 -1.8244 15 6 8.4749 9.4192 -2.9740 16 8 8.8691 8.8793 -3.9861 17 7 8.4891 10.7635 -2.8779 18 6 8.9497 11.5206 -3.9239 19 1 9.3007 11.0399 -4.8251 20 6 8.9649 12.9065 -3.8247 21 7 8.5373 13.4914 -2.7283 22 14 9.5917 13.9382 -5.2502 23 1 10.0120 13.0456 -6.3600 24 1 8.5102 14.8398 -5.7220 25 1 10.7519 14.7494 -4.8015 26 6 8.2125 4.9344 -1.1720 27 6 7.7299 4.0686 -0.0034 28 1 8.1065 3.0526 -0.1214 29 6 8.2369 4.6568 1.3148 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 3.9336 0.9286 0.8891 38 1 3.9329 0.9289 -0.8909 39 1 3.7161 3.3987 -0.8913 40 1 3.7170 3.3992 0.8887 41 1 4.4723 5.1506 -0.1289 42 1 5.7194 5.8568 0.9307 43 1 5.5907 7.1731 -1.1249 44 1 5.7829 5.7046 -2.1127 45 1 8.9970 6.9113 -2.4347 46 1 6.9303 8.8473 -1.6166 47 1 8.5754 8.7810 -0.9403 48 1 8.1735 11.1953 -2.0687 49 1 8.5475 14.4588 -2.6592 50 1 9.2971 5.0334 -1.1276 51 1 7.9282 4.4655 -2.1142 52 1 7.8818 4.0468 2.1453 53 1 9.3269 4.6676 1.3125 54 1 7.8634 5.6748 1.4259 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277723101.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:26 Heat of formation + Delta-G solvation = -122.894697 kcal Electronic energy + Delta-G solvation = -29547.980626 eV Core-core repulsion = 25517.407916 eV Total energy + Delta-G solvation = -4030.572711 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.50442 -40.17982 -39.10157 -36.87286 -36.38682 -35.76373 -34.02784 -33.27191 -32.66334 -32.12274 -29.25137 -28.07351 -27.73199 -25.84993 -24.62434 -24.00484 -22.71036 -21.87340 -21.28235 -21.02359 -19.91403 -19.30753 -18.32428 -17.66656 -17.09434 -17.01389 -16.61076 -16.46430 -16.20387 -16.03653 -15.64400 -15.23260 -15.15652 -14.97471 -14.67836 -14.52255 -14.26574 -14.18910 -13.84805 -13.82395 -13.71920 -13.47913 -13.34954 -12.97901 -12.85517 -12.80955 -12.77980 -12.53245 -12.41454 -12.37226 -12.12256 -12.10034 -11.88358 -11.81708 -11.75995 -11.58762 -11.50805 -11.35855 -11.23475 -10.71945 -10.32552 -10.00559 -9.67569 -9.30146 -8.46462 -5.94843 1.36841 1.42511 1.56290 1.64548 1.99917 2.06352 2.29576 2.90066 3.21127 3.44973 3.52785 3.78373 3.79100 3.90303 4.01411 4.04180 4.18861 4.21629 4.28769 4.31185 4.32947 4.42296 4.44889 4.47836 4.53662 4.54600 4.60554 4.66940 4.70686 4.74986 4.77729 4.88537 4.91840 4.96935 4.98634 5.03490 5.05279 5.12773 5.13919 5.24197 5.25430 5.37711 5.41491 5.43604 5.46617 5.54029 5.61230 5.92509 6.14882 6.40435 6.44628 6.61178 7.13712 7.19477 7.57420 8.13142 8.71016 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.018579 B = 0.001741 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.683333 B =16074.893953 C =16928.737899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.129 4.129 3 C -0.114 4.114 4 C -0.101 4.101 5 C -0.134 4.134 6 C 0.508 3.492 7 O -0.591 6.591 8 N -0.606 5.606 9 C 0.108 3.892 10 C -0.123 4.123 11 C 0.090 3.910 12 H 0.063 0.937 13 N -0.680 5.680 14 C 0.068 3.932 15 C 0.436 3.564 16 O -0.626 6.626 17 N -0.572 5.572 18 C -0.334 4.334 19 H 0.077 0.923 20 C -0.011 4.011 21 N -0.919 5.919 22 Si 0.991 3.009 23 H -0.275 1.275 24 H -0.271 1.271 25 H -0.271 1.271 26 C -0.123 4.123 27 C 0.141 3.859 28 H 0.080 0.920 29 C -0.155 4.155 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.054 0.946 38 H 0.048 0.952 39 H 0.111 0.889 40 H 0.119 0.881 41 H 0.113 0.887 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.057 0.943 45 H 0.343 0.657 46 H 0.106 0.894 47 H 0.067 0.933 48 H 0.397 0.603 49 H 0.278 0.722 50 H 0.080 0.920 51 H 0.057 0.943 52 H 0.056 0.944 53 H 0.074 0.926 54 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.357 -19.304 13.678 27.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C -0.151 4.151 4 C -0.139 4.139 5 C -0.174 4.174 6 C 0.298 3.702 7 O -0.472 6.472 8 N -0.338 5.338 9 C -0.014 4.014 10 C -0.162 4.162 11 C -0.019 4.019 12 H 0.081 0.919 13 N -0.313 5.313 14 C -0.064 4.064 15 C 0.224 3.776 16 O -0.512 6.512 17 N -0.210 5.210 18 C -0.464 4.464 19 H 0.095 0.905 20 C -0.211 4.211 21 N -0.560 5.560 22 Si 0.815 3.185 23 H -0.200 1.200 24 H -0.196 1.196 25 H -0.196 1.196 26 C -0.161 4.161 27 C 0.037 3.963 28 H 0.098 0.902 29 C -0.213 4.213 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.129 0.871 40 H 0.137 0.863 41 H 0.131 0.869 42 H 0.107 0.893 43 H 0.102 0.898 44 H 0.076 0.924 45 H 0.162 0.838 46 H 0.124 0.876 47 H 0.085 0.915 48 H 0.231 0.769 49 H 0.087 0.913 50 H 0.098 0.902 51 H 0.075 0.925 52 H 0.075 0.925 53 H 0.093 0.907 54 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.392 -19.993 12.728 27.223 hybrid contribution 1.269 0.885 0.004 1.547 sum -12.124 -19.109 12.732 25.966 Atomic orbital electron populations 1.21769 0.95187 1.01823 1.02123 1.21543 0.96381 0.97003 1.01691 1.21594 0.93529 0.97043 1.02973 1.21300 0.95938 0.94803 1.01876 1.21787 0.89187 1.00136 1.06273 1.21411 0.91757 0.82570 0.74446 1.90662 1.71609 1.32642 1.52297 1.48362 1.06497 1.06628 1.72331 1.21892 0.97812 0.82666 0.99053 1.21856 0.94634 1.00871 0.98797 1.21606 0.95820 0.92066 0.92404 0.91943 1.60119 1.30315 1.01420 1.39430 1.21569 1.02603 0.88407 0.93848 1.20957 0.83475 0.82818 0.90345 1.90499 1.53872 1.72498 1.34340 1.41925 1.56854 1.05022 1.17181 1.19689 1.40689 0.89120 0.96895 0.90506 1.25995 0.97149 0.97479 1.00455 1.69666 1.47053 1.11514 1.27726 0.84897 0.78202 0.77741 0.77653 1.19972 1.19585 1.19597 1.22020 1.00815 0.94965 0.98326 1.21060 0.80008 0.99878 0.95382 0.90225 1.22098 1.01992 1.01659 0.95547 0.92549 0.92709 0.92264 0.92353 0.92724 0.91238 0.90713 0.92717 0.93313 0.87117 0.86282 0.86872 0.89328 0.89785 0.92367 0.83795 0.87561 0.91547 0.76902 0.91300 0.90193 0.92461 0.92538 0.90699 0.91028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 71.98 0.71 -0.72 16 2 C -0.13 -1.46 5.93 30.59 0.18 -1.28 16 3 C -0.11 -1.19 5.21 30.59 0.16 -1.03 16 4 C -0.10 -1.49 4.50 30.59 0.14 -1.35 16 5 C -0.13 -1.68 4.05 29.85 0.12 -1.56 16 6 C 0.51 10.46 7.70 87.66 0.67 11.13 16 7 O -0.59 -17.39 15.40 -3.03 -0.05 -17.44 16 8 N -0.61 -10.71 2.68 -795.78 -2.14 -12.85 16 9 C 0.11 1.34 5.90 86.22 0.51 1.85 16 10 C -0.12 -2.20 5.57 30.53 0.17 -2.03 16 11 C 0.09 1.89 2.25 44.94 0.10 1.99 16 12 H 0.06 1.15 6.15 -2.39 -0.01 1.14 16 13 N -0.68 -20.29 5.93 -495.43 -2.94 -23.23 16 14 C 0.07 2.18 5.96 85.56 0.51 2.69 16 15 C 0.44 20.33 7.82 87.66 0.69 21.01 16 16 O -0.63 -34.54 15.78 -3.07 -0.05 -34.59 16 17 N -0.57 -28.82 5.29 -306.98 -1.62 -30.44 16 18 C -0.33 -18.85 9.68 84.04 0.81 -18.04 16 19 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 20 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 21 N -0.92 -48.71 13.05 21.66 0.28 -48.42 16 22 Si 0.99 42.56 29.55 68.60 2.03 44.59 16 23 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 24 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 25 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 26 C -0.12 -2.54 4.84 30.68 0.15 -2.39 16 27 C 0.14 2.72 3.21 44.99 0.14 2.86 16 28 H 0.08 1.90 7.01 -2.39 -0.02 1.88 16 29 C -0.16 -2.37 9.03 71.98 0.65 -1.72 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.05 0.95 8.10 -2.39 -0.02 0.93 16 38 H 0.05 0.91 8.10 -2.39 -0.02 0.89 16 39 H 0.11 1.06 7.68 -2.39 -0.02 1.04 16 40 H 0.12 0.88 7.95 -2.39 -0.02 0.86 16 41 H 0.11 0.85 5.94 -2.38 -0.01 0.84 16 42 H 0.09 0.84 7.51 -2.39 -0.02 0.83 16 43 H 0.08 1.44 7.42 -2.39 -0.02 1.42 16 44 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.34 11.07 8.03 -89.69 -0.72 10.35 16 46 H 0.11 2.99 7.41 -2.38 -0.02 2.98 16 47 H 0.07 1.85 8.05 -2.39 -0.02 1.83 16 48 H 0.40 18.79 7.90 -92.71 -0.73 18.06 16 49 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 50 H 0.08 1.57 8.10 -2.39 -0.02 1.55 16 51 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 52 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 53 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 54 H 0.07 0.97 5.73 -2.39 -0.01 0.95 16 Total: -1.00 -72.62 422.19 1.14 -71.48 By element: Atomic # 1 Polarization: 40.14 SS G_CDS: -0.56 Total: 39.58 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: 6.19 Total: 11.32 kcal Atomic # 7 Polarization: -108.53 SS G_CDS: -6.42 Total: -114.94 kcal Atomic # 8 Polarization: -51.93 SS G_CDS: -0.10 Total: -52.03 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -72.62 1.14 -71.48 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277723101.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.411 kcal (2) G-P(sol) polarization free energy of solvation -72.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds