Wall clock time and date at job start Sat Apr 11 2020 05:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46884 * 2 1 4 4 C 1.53002 * 109.46644 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.46825 * 180.02562 * 4 3 2 6 6 C 1.50705 * 109.47123 * 179.97438 * 5 4 3 7 7 O 1.21287 * 119.99883 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00181 * 179.97438 * 6 5 4 9 9 C 1.46931 * 120.62974 * 354.21034 * 8 6 5 10 10 C 1.53193 * 108.77350 * 126.36808 * 9 8 6 11 11 C 1.53043 * 109.31138 * 54.63842 * 10 9 8 12 12 H 1.09000 * 109.46088 * 58.63764 * 11 10 9 13 13 N 1.46902 * 109.45574 * 178.61217 * 11 10 9 14 14 C 1.46903 * 110.99926 * 274.99665 * 13 11 10 15 15 C 1.50692 * 109.47037 * 180.02562 * 14 13 11 16 16 O 1.21290 * 120.00163 * 359.97438 * 15 14 13 17 17 N 1.34778 * 120.00265 * 180.02562 * 15 14 13 18 18 C 1.37089 * 120.00491 * 179.97438 * 17 15 14 19 19 H 1.08001 * 120.00034 * 0.02562 * 18 17 15 20 20 C 1.38950 * 120.00645 * 179.97438 * 18 17 15 21 21 N 1.31409 * 120.00438 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99460 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47348 * 269.99639 * 22 20 18 24 24 H 1.48499 * 109.47357 * 30.00006 * 22 20 18 25 25 H 1.48502 * 109.47194 * 149.99654 * 22 20 18 26 26 C 1.53039 * 109.53576 * 298.62817 * 11 10 9 27 27 C 1.46920 * 120.63326 * 174.18704 * 8 6 5 28 28 H 1.08999 * 109.58476 * 113.70046 * 27 8 6 29 29 C 1.53002 * 109.58556 * 353.41728 * 27 8 6 30 30 H 1.08995 * 109.47022 * 300.00288 * 1 2 3 31 31 H 1.08997 * 109.47125 * 60.00132 * 1 2 3 32 32 H 1.09000 * 109.46834 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.46878 * 240.00247 * 2 1 3 34 34 H 1.08997 * 109.47125 * 119.99868 * 2 1 3 35 35 H 1.08995 * 109.47161 * 60.00420 * 3 2 1 36 36 H 1.08997 * 109.47132 * 299.99864 * 3 2 1 37 37 H 1.08995 * 109.47384 * 59.99637 * 4 3 2 38 38 H 1.09007 * 109.46965 * 299.99848 * 4 3 2 39 39 H 1.08995 * 109.47630 * 59.99550 * 5 4 3 40 40 H 1.08997 * 109.46847 * 299.99504 * 5 4 3 41 41 H 1.09001 * 109.58127 * 6.58425 * 9 8 6 42 42 H 1.08994 * 109.70161 * 246.22911 * 9 8 6 43 43 H 1.08997 * 109.50226 * 294.68355 * 10 9 8 44 44 H 1.09007 * 109.51938 * 174.60271 * 10 9 8 45 45 H 1.00898 * 110.99392 * 151.04684 * 13 11 10 46 46 H 1.08994 * 109.46863 * 60.00048 * 14 13 11 47 47 H 1.09002 * 109.46830 * 300.00669 * 14 13 11 48 48 H 0.97004 * 119.99272 * 359.97438 * 17 15 14 49 49 H 0.97001 * 119.99824 * 179.97438 * 21 20 18 50 50 H 1.08999 * 109.49558 * 181.31350 * 26 11 10 51 51 H 1.08993 * 109.49990 * 301.41761 * 26 11 10 52 52 H 1.09008 * 109.46874 * 65.78715 * 29 27 8 53 53 H 1.08996 * 109.47172 * 185.77929 * 29 27 8 54 54 H 1.08998 * 109.47406 * 305.78667 * 29 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 6 5.5870 2.8850 0.0000 7 8 6.1935 1.8346 0.0000 8 7 6.2609 4.0522 0.0000 9 6 5.5459 5.3294 -0.1275 10 6 5.9516 6.2398 1.0358 11 6 7.4759 6.3732 1.0665 12 1 7.8237 6.7827 0.1181 13 7 7.8665 7.2722 2.1606 14 6 7.8153 8.6764 1.7319 15 6 8.2221 9.5665 2.8778 16 8 8.5244 9.0793 3.9465 17 7 8.2489 10.9042 2.7154 18 6 8.6185 11.7141 3.7579 19 1 8.8885 11.2802 4.7093 20 6 8.6467 13.0932 3.5903 21 7 9.0005 13.8695 4.5899 22 14 8.1803 13.8437 1.9445 23 1 9.3920 13.9651 1.0946 24 1 7.1859 12.9731 1.2674 25 1 7.5921 15.1896 2.1631 26 6 8.1057 4.9962 1.2885 27 6 7.7244 4.0717 0.1280 28 1 8.1672 4.4411 -0.7969 29 6 8.2334 2.6568 0.4110 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9564 -0.8900 37 1 3.9330 0.9288 -0.8908 38 1 3.9337 0.9285 0.8892 39 1 3.7170 3.3984 0.8903 40 1 3.7163 3.3993 -0.8896 41 1 4.4711 5.1513 -0.0945 42 1 5.8087 5.8049 -1.0725 43 1 5.6053 5.8071 1.9744 44 1 5.5029 7.2242 0.9016 45 1 8.7814 7.0352 2.5140 46 1 6.8005 8.9245 1.4211 47 1 8.4982 8.8261 0.8957 48 1 8.0067 11.2939 1.8607 49 1 9.0205 14.8322 4.4727 50 1 9.1902 5.0952 1.3335 51 1 7.7391 4.5751 2.2246 52 1 8.0411 2.0217 -0.4538 53 1 9.3051 2.6886 0.6072 54 1 7.7166 2.2520 1.2811 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277723103.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:32 Heat of formation + Delta-G solvation = -103.677104 kcal Electronic energy + Delta-G solvation = -29629.649407 eV Core-core repulsion = 25599.910034 eV Total energy + Delta-G solvation = -4029.739373 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.58950 -40.32106 -38.92107 -36.93057 -36.33275 -35.78229 -34.30414 -33.74707 -32.62415 -32.19204 -29.17088 -27.96503 -27.70390 -25.72698 -24.61298 -24.00576 -22.39271 -21.76093 -21.44016 -21.26097 -20.28473 -19.77654 -17.88392 -17.67106 -17.24900 -17.03285 -16.82892 -16.54529 -16.23363 -15.82513 -15.57235 -15.18482 -15.09061 -15.01204 -14.77853 -14.59453 -14.24889 -14.06773 -13.98705 -13.94582 -13.80152 -13.45679 -13.33203 -13.17778 -12.92891 -12.77461 -12.64005 -12.57572 -12.50530 -12.40534 -12.04219 -11.97037 -11.88080 -11.80277 -11.70122 -11.58103 -11.50415 -11.42793 -11.35675 -10.42442 -10.24372 -10.06092 -9.56853 -9.31554 -8.40533 -6.01831 1.31202 1.36881 1.46118 1.68757 1.96956 2.03468 2.24244 2.71376 3.16112 3.34765 3.52744 3.76568 3.82979 3.90890 4.02608 4.04713 4.16088 4.17597 4.26944 4.31278 4.33227 4.44130 4.44587 4.49629 4.50836 4.54144 4.58391 4.67846 4.75036 4.76871 4.82156 4.89202 4.90241 4.97351 4.99348 5.03114 5.10197 5.13647 5.22559 5.25329 5.34870 5.38648 5.40260 5.46898 5.54012 5.54623 5.69436 5.92451 6.10216 6.38273 6.49814 6.60710 6.89037 7.27081 7.40705 7.97925 8.77188 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017129 B = 0.001832 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.290110 B =15283.291126 C =16178.035404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C -0.115 4.115 4 C -0.099 4.099 5 C -0.137 4.137 6 C 0.506 3.494 7 O -0.572 6.572 8 N -0.611 5.611 9 C 0.109 3.891 10 C -0.123 4.123 11 C 0.090 3.910 12 H 0.064 0.936 13 N -0.684 5.684 14 C 0.064 3.936 15 C 0.447 3.553 16 O -0.617 6.617 17 N -0.590 5.590 18 C -0.331 4.331 19 H 0.053 0.947 20 C -0.016 4.016 21 N -0.935 5.935 22 Si 0.966 3.034 23 H -0.257 1.257 24 H -0.228 1.228 25 H -0.276 1.276 26 C -0.125 4.125 27 C 0.149 3.851 28 H 0.085 0.915 29 C -0.127 4.127 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.055 0.945 38 H 0.048 0.952 39 H 0.106 0.894 40 H 0.117 0.883 41 H 0.112 0.888 42 H 0.090 0.910 43 H 0.057 0.943 44 H 0.086 0.914 45 H 0.343 0.657 46 H 0.116 0.884 47 H 0.078 0.922 48 H 0.390 0.610 49 H 0.279 0.721 50 H 0.079 0.921 51 H 0.056 0.944 52 H 0.064 0.936 53 H 0.052 0.948 54 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.678 -21.939 -20.482 33.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C -0.152 4.152 4 C -0.138 4.138 5 C -0.177 4.177 6 C 0.296 3.704 7 O -0.453 6.453 8 N -0.344 5.344 9 C -0.013 4.013 10 C -0.162 4.162 11 C -0.019 4.019 12 H 0.082 0.918 13 N -0.317 5.317 14 C -0.068 4.068 15 C 0.235 3.765 16 O -0.501 6.501 17 N -0.232 5.232 18 C -0.460 4.460 19 H 0.071 0.929 20 C -0.214 4.214 21 N -0.576 5.576 22 Si 0.786 3.214 23 H -0.182 1.182 24 H -0.151 1.151 25 H -0.201 1.201 26 C -0.164 4.164 27 C 0.046 3.954 28 H 0.103 0.897 29 C -0.185 4.185 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.124 0.876 40 H 0.135 0.865 41 H 0.130 0.870 42 H 0.108 0.892 43 H 0.075 0.925 44 H 0.105 0.895 45 H 0.163 0.837 46 H 0.134 0.866 47 H 0.096 0.904 48 H 0.226 0.774 49 H 0.088 0.912 50 H 0.097 0.903 51 H 0.075 0.925 52 H 0.083 0.917 53 H 0.071 0.929 54 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -14.744 -22.595 -19.393 33.227 hybrid contribution 1.097 0.912 -0.297 1.458 sum -13.647 -21.683 -19.690 32.312 Atomic orbital electron populations 1.21772 0.95266 1.01813 1.02094 1.21541 0.96325 0.97023 1.01694 1.21598 0.93768 0.96982 1.02852 1.21285 0.95744 0.94836 1.01898 1.21808 0.89882 0.99997 1.05966 1.21300 0.91429 0.82834 0.74799 1.90733 1.70234 1.33036 1.51260 1.48345 1.06990 1.06882 1.72219 1.21983 0.98305 0.82242 0.98782 1.21942 0.94732 1.00686 0.98796 1.21587 0.96335 0.91421 0.92524 0.91843 1.60117 1.35629 1.00954 1.34998 1.21677 1.03695 0.88098 0.93334 1.21063 0.81984 0.82686 0.90755 1.90551 1.53840 1.75078 1.30658 1.42020 1.62299 1.05844 1.13021 1.19005 1.44505 0.89115 0.93364 0.92894 1.26144 0.96521 0.95639 1.03102 1.69811 1.48127 1.05498 1.34153 0.85349 0.80061 0.78848 0.77150 1.18182 1.15100 1.20136 1.22111 1.01083 0.94583 0.98632 1.21200 0.79987 0.96259 0.98000 0.89666 1.22033 0.99118 0.94778 1.02535 0.92615 0.92264 0.92713 0.92296 0.92748 0.91425 0.90777 0.92572 0.93322 0.87580 0.86509 0.87016 0.89184 0.92461 0.89522 0.83747 0.86613 0.90432 0.77396 0.91166 0.90291 0.92477 0.91663 0.92887 0.93949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.91 71.98 0.71 -0.67 16 2 C -0.13 -1.39 5.93 30.60 0.18 -1.21 16 3 C -0.11 -1.13 5.22 30.60 0.16 -0.97 16 4 C -0.10 -1.36 4.50 30.59 0.14 -1.22 16 5 C -0.14 -1.56 4.06 29.85 0.12 -1.44 16 6 C 0.51 9.36 7.50 87.66 0.66 10.02 16 7 O -0.57 -14.74 11.55 -3.05 -0.04 -14.77 16 8 N -0.61 -9.70 2.97 -795.01 -2.36 -12.06 16 9 C 0.11 1.13 6.35 86.36 0.55 1.67 16 10 C -0.12 -1.90 5.59 30.67 0.17 -1.73 16 11 C 0.09 1.69 2.46 44.94 0.11 1.80 16 12 H 0.06 0.98 7.80 -2.39 -0.02 0.96 16 13 N -0.68 -18.83 5.93 -495.44 -2.94 -21.77 16 14 C 0.06 1.81 5.96 85.55 0.51 2.32 16 15 C 0.45 19.66 7.82 87.65 0.69 20.35 16 16 O -0.62 -34.01 15.78 -3.06 -0.05 -34.06 16 17 N -0.59 -27.16 5.09 -307.00 -1.56 -28.72 16 18 C -0.33 -19.23 10.16 84.04 0.85 -18.38 16 19 H 0.05 3.70 7.39 -2.91 -0.02 3.67 16 20 C -0.02 -0.85 5.50 84.93 0.47 -0.39 16 21 N -0.94 -56.12 13.96 21.66 0.30 -55.81 16 22 Si 0.97 37.80 27.74 68.60 1.90 39.71 16 23 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 24 H -0.23 -7.34 6.52 99.48 0.65 -6.69 16 25 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 26 C -0.13 -2.38 4.65 30.67 0.14 -2.24 16 27 C 0.15 2.61 3.49 44.98 0.16 2.77 16 28 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 29 C -0.13 -2.69 7.61 71.98 0.55 -2.14 16 30 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.06 0.90 8.10 -2.39 -0.02 0.88 16 38 H 0.05 0.85 8.10 -2.38 -0.02 0.83 16 39 H 0.11 0.98 7.93 -2.39 -0.02 0.96 16 40 H 0.12 0.74 7.70 -2.39 -0.02 0.72 16 41 H 0.11 0.65 5.93 -2.39 -0.01 0.64 16 42 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.09 1.22 7.43 -2.38 -0.02 1.20 16 45 H 0.34 10.45 8.03 -89.70 -0.72 9.73 16 46 H 0.12 2.66 7.41 -2.39 -0.02 2.64 16 47 H 0.08 1.74 8.05 -2.39 -0.02 1.72 16 48 H 0.39 14.60 5.76 -92.71 -0.53 14.07 16 49 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 50 H 0.08 1.43 8.10 -2.39 -0.02 1.41 16 51 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 52 H 0.06 1.56 6.54 -2.38 -0.02 1.54 16 53 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 54 H 0.04 1.07 6.96 -2.39 -0.02 1.06 16 Total: -1.00 -79.91 417.70 0.99 -78.92 By element: Atomic # 1 Polarization: 40.46 SS G_CDS: -0.43 Total: 40.02 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: 6.17 Total: 8.54 kcal Atomic # 7 Polarization: -111.80 SS G_CDS: -6.56 Total: -118.36 kcal Atomic # 8 Polarization: -48.75 SS G_CDS: -0.08 Total: -48.83 kcal Atomic # 14 Polarization: 37.80 SS G_CDS: 1.90 Total: 39.71 kcal Total: -79.91 0.99 -78.92 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277723103.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.756 kcal (2) G-P(sol) polarization free energy of solvation -79.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds