Wall clock time and date at job start Sat Apr 11 2020 05:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47202 * 2 1 4 4 C 1.53001 * 109.47235 * 120.00059 * 2 1 3 5 5 C 1.53001 * 109.47231 * 174.99816 * 4 2 1 6 6 C 1.50697 * 109.47101 * 179.97438 * 5 4 2 7 7 O 1.21280 * 120.00347 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00207 * 179.97438 * 6 5 4 9 9 C 1.46493 * 120.00317 * 180.02562 * 8 6 5 10 10 C 1.50697 * 109.47264 * 180.02562 * 9 8 6 11 11 O 1.21286 * 119.99956 * 359.97438 * 10 9 8 12 12 N 1.34782 * 120.00189 * 180.02562 * 10 9 8 13 13 C 1.46498 * 119.99927 * 180.02562 * 12 10 9 14 14 H 1.08999 * 110.01855 * 326.39092 * 13 12 10 15 15 C 1.53879 * 110.03350 * 87.83153 * 13 12 10 16 16 C 1.54264 * 106.59704 * 119.28187 * 15 13 12 17 17 C 1.54879 * 104.19796 * 23.61244 * 16 15 13 18 18 H 1.09005 * 110.91660 * 80.44331 * 17 16 15 19 19 C 1.53004 * 110.75911 * 203.74149 * 17 16 15 20 20 N 1.46504 * 109.46932 * 288.33040 * 19 17 16 21 21 C 1.36934 * 119.99567 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00537 * 359.97438 * 21 20 19 23 23 C 1.38811 * 119.99798 * 179.97438 * 21 20 19 24 24 N 1.31624 * 120.00134 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00229 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47228 * 179.97438 * 25 23 21 27 27 H 1.48501 * 109.46793 * 299.99987 * 25 23 21 28 28 H 1.48500 * 109.47000 * 60.00079 * 25 23 21 29 29 C 1.54266 * 110.03088 * 204.99826 * 13 12 10 30 30 H 1.09005 * 109.46974 * 299.99884 * 1 2 3 31 31 H 1.09000 * 109.47377 * 59.99453 * 1 2 3 32 32 H 1.08997 * 109.47612 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46727 * 239.99644 * 2 1 3 34 34 H 1.08995 * 109.46940 * 60.00337 * 3 2 1 35 35 H 1.08997 * 109.46840 * 180.02562 * 3 2 1 36 36 H 1.09000 * 109.47117 * 300.00064 * 3 2 1 37 37 H 1.08999 * 109.47125 * 54.99882 * 4 2 1 38 38 H 1.09001 * 109.47106 * 295.00153 * 4 2 1 39 39 H 1.08999 * 109.47012 * 59.99997 * 5 4 2 40 40 H 1.08999 * 109.47109 * 299.99702 * 5 4 2 41 41 H 0.97003 * 119.99466 * 0.02562 * 8 6 5 42 42 H 1.08999 * 109.47209 * 60.00078 * 9 8 6 43 43 H 1.09004 * 109.47444 * 300.00029 * 9 8 6 44 44 H 0.96998 * 119.99638 * 359.97438 * 12 10 9 45 45 H 1.08993 * 110.03542 * 238.56767 * 15 13 12 46 46 H 1.09003 * 110.02978 * 359.95329 * 15 13 12 47 47 H 1.09000 * 110.48918 * 264.93042 * 16 15 13 48 48 H 1.09003 * 110.48296 * 142.29398 * 16 15 13 49 49 H 1.08998 * 109.47524 * 168.32684 * 19 17 16 50 50 H 1.08997 * 109.47093 * 48.32585 * 19 17 16 51 51 H 0.97000 * 119.99825 * 359.97438 * 20 19 17 52 52 H 0.97005 * 119.99717 * 0.02562 * 24 23 21 53 53 H 1.08991 * 110.48717 * 98.43005 * 29 13 12 54 54 H 1.08997 * 110.59733 * 335.83422 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8311 1.1879 6 6 4.0672 -1.5409 2.4187 7 8 3.2829 -1.9220 3.2616 8 7 5.3880 -1.7533 2.5822 9 6 5.8764 -2.4439 3.7783 10 6 7.3783 -2.5520 3.7180 11 8 7.9814 -2.0973 2.7690 12 7 8.0513 -3.1547 4.7182 13 6 9.5114 -3.2593 4.6598 14 1 9.8359 -3.3777 3.6260 15 6 10.1547 -2.0040 5.2747 16 6 11.0013 -2.4841 6.4716 17 6 11.3098 -3.9670 6.1482 18 1 12.1369 -4.0475 5.4427 19 6 11.6132 -4.7493 7.4276 20 7 12.9225 -4.3467 7.9473 21 6 13.4088 -4.9166 9.0935 22 1 12.8271 -5.6625 9.6147 23 6 14.6496 -4.5356 9.5856 24 7 15.3589 -3.6270 8.9502 25 14 15.3128 -5.3124 11.1496 26 1 16.6469 -4.7388 11.4600 27 1 14.3813 -5.0366 12.2728 28 1 15.4377 -6.7798 10.9590 29 6 9.9895 -4.4583 5.5044 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8932 -0.5139 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1299 1.4424 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.6054 -1.7198 1.2952 38 1 1.7516 -0.1583 2.1370 39 1 3.9994 0.1674 1.1420 40 1 3.8531 -1.3941 0.3002 41 1 6.0153 -1.4489 1.9078 42 1 5.4415 -3.4423 3.8245 43 1 5.5884 -1.8807 4.6661 44 1 7.5689 -3.5186 5.4770 45 1 10.7922 -1.5129 4.5396 46 1 9.3806 -1.3166 5.6159 47 1 10.4316 -2.4061 7.3976 48 1 11.9245 -1.9086 6.5411 49 1 11.6223 -5.8167 7.2073 50 1 10.8462 -4.5386 8.1728 51 1 13.4448 -3.6766 7.4793 52 1 15.0143 -3.2233 8.1382 53 1 10.1743 -5.3237 4.8681 54 1 9.2572 -4.7014 6.2743 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278602674.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:52 Heat of formation + Delta-G solvation = -124.455231 kcal Electronic energy + Delta-G solvation = -28468.773744 eV Core-core repulsion = 24438.133363 eV Total energy + Delta-G solvation = -4030.640380 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.44591 -40.58264 -39.29630 -37.49420 -36.79976 -35.50862 -34.97348 -32.94776 -32.11466 -30.10903 -29.84191 -28.10164 -27.98505 -25.98214 -25.01409 -24.19932 -22.13300 -21.53413 -21.48151 -20.79141 -20.71609 -19.33445 -18.77510 -17.81997 -17.35589 -17.12470 -16.97889 -16.74109 -16.27279 -16.20477 -15.72216 -15.53199 -15.28948 -15.07727 -14.88528 -14.63690 -14.53243 -14.30722 -14.14136 -13.76407 -13.64309 -13.40109 -13.05617 -12.96952 -12.80069 -12.67783 -12.62736 -12.58098 -12.21952 -12.09347 -11.88190 -11.81738 -11.71613 -11.68894 -11.54727 -11.50781 -11.43640 -11.21127 -11.11447 -10.96435 -10.90715 -10.30281 -10.12679 -9.09874 -8.40261 -5.33509 1.42353 1.58531 1.60091 1.68563 1.73929 1.85036 2.41579 2.71836 3.39326 3.44025 3.50222 3.60401 3.75343 3.83040 3.88917 3.99338 3.99664 4.19290 4.26632 4.32967 4.34347 4.39863 4.42376 4.45788 4.50973 4.56145 4.57067 4.67569 4.68530 4.82123 4.84327 4.86972 4.93666 4.96905 5.03672 5.07508 5.07680 5.12223 5.15658 5.18936 5.25159 5.27734 5.35361 5.42994 5.49955 5.51229 5.55192 5.58707 6.40147 6.44976 6.49427 7.06862 7.10317 7.16430 8.01339 8.12063 9.11963 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.041793 B = 0.001324 C = 0.001312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.808792 B =21139.662774 C =21336.343809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.152 4.152 4 C -0.096 4.096 5 C -0.136 4.136 6 C 0.512 3.488 7 O -0.581 6.581 8 N -0.718 5.718 9 C 0.101 3.899 10 C 0.513 3.487 11 O -0.571 6.571 12 N -0.705 5.705 13 C 0.151 3.849 14 H 0.085 0.915 15 C -0.124 4.124 16 C -0.108 4.108 17 C -0.093 4.093 18 H 0.067 0.933 19 C 0.165 3.835 20 N -0.757 5.757 21 C -0.337 4.337 22 H 0.066 0.934 23 C -0.104 4.104 24 N -0.975 5.975 25 Si 1.128 2.872 26 H -0.293 1.293 27 H -0.277 1.277 28 H -0.277 1.277 29 C -0.108 4.108 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.049 0.951 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.416 0.584 42 H 0.110 0.890 43 H 0.107 0.893 44 H 0.418 0.582 45 H 0.064 0.936 46 H 0.071 0.929 47 H 0.063 0.937 48 H 0.046 0.954 49 H 0.018 0.982 50 H 0.022 0.978 51 H 0.360 0.640 52 H 0.243 0.757 53 H 0.084 0.916 54 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.132 6.064 -19.518 35.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.113 4.113 3 C -0.209 4.209 4 C -0.134 4.134 5 C -0.175 4.175 6 C 0.301 3.699 7 O -0.461 6.461 8 N -0.373 5.373 9 C -0.026 4.026 10 C 0.299 3.701 11 O -0.451 6.451 12 N -0.357 5.357 13 C 0.046 3.954 14 H 0.103 0.897 15 C -0.162 4.162 16 C -0.146 4.146 17 C -0.112 4.112 18 H 0.086 0.914 19 C 0.039 3.961 20 N -0.401 5.401 21 C -0.468 4.468 22 H 0.084 0.916 23 C -0.295 4.295 24 N -0.624 5.624 25 Si 0.952 3.048 26 H -0.219 1.219 27 H -0.203 1.203 28 H -0.203 1.203 29 C -0.146 4.146 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.255 0.745 42 H 0.128 0.872 43 H 0.125 0.875 44 H 0.255 0.745 45 H 0.083 0.917 46 H 0.090 0.910 47 H 0.082 0.918 48 H 0.065 0.935 49 H 0.036 0.964 50 H 0.040 0.960 51 H 0.192 0.808 52 H 0.054 0.946 53 H 0.103 0.897 54 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -28.140 5.894 -18.415 34.142 hybrid contribution -0.607 0.266 -0.907 1.124 sum -28.748 6.160 -19.322 35.181 Atomic orbital electron populations 1.21846 0.95170 1.01767 1.01896 1.21125 0.95898 0.96582 0.97675 1.21933 1.01579 0.95566 1.01859 1.21361 0.93073 1.00771 0.98206 1.21793 0.97741 1.02671 0.95325 1.21329 0.81184 0.78603 0.88779 1.90702 1.56205 1.53037 1.46167 1.45817 1.08156 1.59691 1.23637 1.21093 0.89687 1.00946 0.90873 1.20747 0.90099 0.77109 0.82107 1.90698 1.70626 1.49106 1.34648 1.45995 1.07344 1.58736 1.23639 1.21496 0.79038 0.94614 1.00279 0.89716 1.22490 0.99132 0.97548 0.97070 1.22264 0.99064 0.95216 0.98082 1.22166 0.97943 0.95152 0.95945 0.91432 1.20748 0.86136 0.95980 0.93226 1.42587 1.19326 1.49124 1.29102 1.20424 1.03526 1.19904 1.02985 0.91567 1.27218 0.94614 0.99947 1.07739 1.70999 1.40566 1.30793 1.20006 0.82636 0.75396 0.75023 0.71743 1.21903 1.20310 1.20329 1.22521 0.96027 0.96961 0.99080 0.93150 0.91958 0.92827 0.90195 0.93181 0.91739 0.92199 0.92466 0.92706 0.86822 0.86654 0.74517 0.87177 0.87480 0.74480 0.91720 0.90984 0.91847 0.93547 0.96410 0.95992 0.80802 0.94635 0.89750 0.89074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.19 71.98 0.66 -0.65 16 2 C -0.09 -0.78 2.92 -10.79 -0.03 -0.81 16 3 C -0.15 -1.12 8.95 71.98 0.64 -0.48 16 4 C -0.10 -1.12 3.97 30.60 0.12 -1.00 16 5 C -0.14 -1.29 5.45 29.85 0.16 -1.13 16 6 C 0.51 8.28 7.83 87.66 0.69 8.96 16 7 O -0.58 -13.84 15.98 -3.03 -0.05 -13.88 16 8 N -0.72 -10.27 5.53 -466.80 -2.58 -12.85 16 9 C 0.10 1.37 6.15 85.63 0.53 1.90 16 10 C 0.51 8.79 7.90 87.66 0.69 9.48 16 11 O -0.57 -13.68 15.32 -3.05 -0.05 -13.72 16 12 N -0.71 -10.56 4.98 -439.09 -2.19 -12.74 16 13 C 0.15 2.98 3.25 45.72 0.15 3.12 16 14 H 0.08 1.88 7.56 -2.39 -0.02 1.87 16 15 C -0.12 -2.84 6.59 31.32 0.21 -2.63 16 16 C -0.11 -3.09 6.20 31.66 0.20 -2.90 16 17 C -0.09 -2.73 2.91 -9.50 -0.03 -2.76 16 18 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 19 C 0.17 6.39 5.70 86.38 0.49 6.88 16 20 N -0.76 -38.36 5.52 -343.44 -1.90 -40.26 16 21 C -0.34 -19.15 9.99 84.03 0.84 -18.31 16 22 H 0.07 3.65 7.83 -2.91 -0.02 3.63 16 23 C -0.10 -6.09 5.50 84.86 0.47 -5.62 16 24 N -0.98 -61.56 13.70 21.65 0.30 -61.26 16 25 Si 1.13 51.95 29.92 68.60 2.05 54.01 16 26 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 27 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 28 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 29 C -0.11 -2.20 5.97 31.67 0.19 -2.01 16 30 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.06 0.38 6.57 -2.39 -0.02 0.36 16 36 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.06 0.81 8.10 -2.39 -0.02 0.79 16 38 H 0.05 0.81 8.10 -2.39 -0.02 0.79 16 39 H 0.11 0.73 6.57 -2.39 -0.02 0.71 16 40 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.42 5.47 7.44 -92.71 -0.69 4.78 16 42 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.11 1.33 8.14 -2.38 -0.02 1.31 16 44 H 0.42 4.05 8.36 -92.71 -0.78 3.28 16 45 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.07 1.56 7.92 -2.39 -0.02 1.54 16 47 H 0.06 1.85 7.93 -2.39 -0.02 1.84 16 48 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 49 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 50 H 0.02 0.85 7.99 -2.39 -0.02 0.83 16 51 H 0.36 18.98 6.50 -92.71 -0.60 18.37 16 52 H 0.24 15.31 6.77 -92.70 -0.63 14.68 16 53 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 54 H 0.09 1.59 7.65 -2.39 -0.02 1.57 16 Total: -1.00 -76.19 430.01 0.53 -75.65 By element: Atomic # 1 Polarization: 34.04 SS G_CDS: -1.03 Total: 33.00 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: 5.98 Total: -7.95 kcal Atomic # 7 Polarization: -120.74 SS G_CDS: -6.37 Total: -127.11 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -0.10 Total: -27.61 kcal Atomic # 14 Polarization: 51.95 SS G_CDS: 2.05 Total: 54.01 kcal Total: -76.19 0.53 -75.65 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278602674.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.800 kcal (2) G-P(sol) polarization free energy of solvation -76.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds