Wall clock time and date at job start Sat Apr 11 2020 05:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47022 * 2 1 4 4 C 1.53008 * 109.47213 * 302.88272 * 3 2 1 5 5 C 1.53000 * 109.47002 * 295.26045 * 4 3 2 6 6 C 1.50701 * 109.47220 * 62.87994 * 3 2 1 7 7 O 1.21280 * 120.00344 * 247.83069 * 6 3 2 8 8 N 1.34784 * 119.99468 * 67.83081 * 6 3 2 9 9 C 1.47012 * 125.65108 * 3.93607 * 8 6 3 10 10 C 1.54306 * 107.27836 * 180.97069 * 9 8 6 11 11 C 1.55154 * 102.86479 * 22.52543 * 10 9 8 12 12 H 1.09005 * 111.00361 * 82.37763 * 11 10 9 13 13 C 1.53002 * 111.00840 * 206.23095 * 11 10 9 14 14 H 1.08993 * 109.47096 * 52.19924 * 13 11 10 15 15 C 1.52998 * 109.46957 * 172.19677 * 13 11 10 16 16 N 1.46898 * 109.46848 * 292.19410 * 13 11 10 17 17 C 1.46903 * 110.99553 * 154.99832 * 16 13 11 18 18 C 1.50702 * 109.46930 * 179.97438 * 17 16 13 19 19 O 1.21287 * 119.99896 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99910 * 179.97438 * 18 17 16 21 21 C 1.37098 * 120.00110 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99871 * 0.02562 * 21 20 18 23 23 C 1.38951 * 120.00159 * 179.97438 * 21 20 18 24 24 N 1.31406 * 119.99923 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 119.99860 * 0.02562 * 23 21 20 26 26 H 1.48492 * 109.47181 * 89.99358 * 25 23 21 27 27 H 1.48498 * 109.46874 * 209.99597 * 25 23 21 28 28 H 1.48502 * 109.47073 * 329.99275 * 25 23 21 29 29 C 1.47426 * 125.64411 * 184.24606 * 8 6 3 30 30 H 1.09000 * 109.46600 * 295.85312 * 1 2 3 31 31 H 1.09000 * 109.47559 * 55.85525 * 1 2 3 32 32 H 1.08999 * 109.47006 * 175.86389 * 1 2 3 33 33 H 1.09000 * 109.47291 * 120.00130 * 2 1 3 34 34 H 1.09006 * 109.46345 * 240.00203 * 2 1 3 35 35 H 1.08995 * 109.47098 * 182.88278 * 3 2 1 36 36 H 1.08998 * 109.46851 * 55.25821 * 4 3 2 37 37 H 1.08992 * 109.47024 * 175.25991 * 4 3 2 38 38 H 1.09001 * 109.47308 * 65.26524 * 5 4 3 39 39 H 1.08997 * 109.46981 * 185.27042 * 5 4 3 40 40 H 1.09009 * 109.47075 * 305.27154 * 5 4 3 41 41 H 1.08998 * 109.88692 * 300.51593 * 9 8 6 42 42 H 1.09006 * 109.88238 * 61.67989 * 9 8 6 43 43 H 1.09007 * 110.92740 * 264.11493 * 10 9 8 44 44 H 1.08996 * 110.74875 * 140.85878 * 10 9 8 45 45 H 1.09001 * 109.47245 * 60.00056 * 15 13 11 46 46 H 1.08999 * 109.47276 * 179.97438 * 15 13 11 47 47 H 1.08999 * 109.47593 * 300.00088 * 15 13 11 48 48 H 1.00900 * 110.99918 * 31.04892 * 16 13 11 49 49 H 1.08995 * 109.47176 * 300.00399 * 17 16 13 50 50 H 1.09004 * 109.46870 * 60.00614 * 17 16 13 51 51 H 0.96998 * 119.99904 * 0.02562 * 20 18 17 52 52 H 0.96999 * 119.99644 * 180.02562 * 24 23 21 53 53 H 1.08998 * 110.36947 * 274.67258 * 29 8 6 54 54 H 1.09007 * 110.36787 * 36.99998 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4716 2.1844 -1.2114 5 6 2.0166 1.5565 -2.4958 6 6 1.5968 2.1320 1.2646 7 8 0.7836 3.0302 1.2125 8 7 2.1043 1.7504 2.4535 9 6 3.1513 0.7378 2.6530 10 6 3.3902 0.6189 4.1728 11 6 2.0636 1.1536 4.7739 12 1 1.2996 0.3762 4.7879 13 6 2.2874 1.7247 6.1756 14 1 3.1017 2.4487 6.1472 15 6 1.0086 2.4140 6.6556 16 7 2.6326 0.6354 7.0988 17 6 3.4078 1.1388 8.2406 18 6 3.7421 -0.0044 9.1638 19 8 3.3715 -1.1279 8.8967 20 7 4.4538 0.2216 10.2859 21 6 4.7575 -0.8182 11.1261 22 1 4.4269 -1.8186 10.8887 23 6 5.4917 -0.5853 12.2826 24 7 5.7833 -1.5822 13.0877 25 14 6.0642 1.1448 12.6929 26 1 5.0292 1.8281 13.5095 27 1 7.3344 1.0771 13.4592 28 1 6.2843 1.9045 11.4360 29 6 1.6967 2.2746 3.7697 30 1 -0.3632 0.4481 0.9248 31 1 -0.3634 0.5768 -0.8505 32 1 -0.3633 -1.0250 -0.0741 33 1 1.8934 -0.5138 0.8900 34 1 1.8932 -0.5139 -0.8901 35 1 3.1287 1.4429 -0.0517 36 1 0.3841 2.1117 -1.2045 37 1 1.7660 3.2329 -1.1663 38 1 1.6449 0.5359 -2.5874 39 1 1.6872 2.1416 -3.3544 40 1 3.1060 1.5446 -2.4606 41 1 2.8216 -0.2205 2.2516 42 1 4.0704 1.0526 2.1587 43 1 4.2318 1.2378 4.4842 44 1 3.5515 -0.4206 4.4581 45 1 0.1943 1.6901 6.6841 46 1 1.1679 2.8205 7.6544 47 1 0.7524 3.2223 5.9707 48 1 3.1303 -0.1002 6.6200 49 1 4.3289 1.5970 7.8806 50 1 2.8194 1.8810 8.7802 51 1 4.7504 1.1201 10.4993 52 1 6.2954 -1.4195 13.8952 53 1 2.2466 3.1867 4.0017 54 1 0.6232 2.4631 3.7872 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278984548.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:13 Heat of formation + Delta-G solvation = -107.810069 kcal Electronic energy + Delta-G solvation = -30075.658343 eV Core-core repulsion = 26045.739751 eV Total energy + Delta-G solvation = -4029.918592 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -41.52890 -40.36532 -39.39395 -37.09163 -36.94073 -35.93179 -33.76037 -33.10680 -32.04743 -31.38728 -29.55902 -28.23368 -28.07969 -25.98018 -24.65283 -24.35706 -22.82720 -21.61688 -21.32812 -20.99980 -20.21069 -19.72995 -18.16206 -17.84931 -17.26352 -17.00336 -16.88742 -16.58265 -16.41443 -16.02007 -15.53203 -15.13754 -15.01039 -14.81245 -14.59446 -14.46271 -14.29943 -14.17680 -13.92401 -13.76190 -13.65525 -13.60179 -13.35519 -13.32269 -13.02487 -12.90132 -12.83637 -12.61216 -12.40282 -12.34452 -12.21900 -12.04545 -11.98615 -11.90545 -11.69905 -11.54840 -11.50442 -11.48448 -11.30030 -10.72812 -10.41178 -10.23578 -9.66860 -9.30922 -8.40264 -6.00976 1.30762 1.36572 1.45085 1.59856 1.95377 1.97380 2.23782 2.71516 3.16212 3.29352 3.43083 3.54149 3.68272 3.76556 3.86503 3.90654 4.15585 4.18101 4.25140 4.30151 4.34339 4.35406 4.40736 4.45754 4.47532 4.54944 4.58909 4.60379 4.64760 4.73522 4.79477 4.86643 4.87158 4.89522 4.94544 5.03986 5.04905 5.09386 5.19828 5.22411 5.22998 5.27517 5.30558 5.34172 5.44704 5.54350 5.56918 5.93123 6.09979 6.44899 6.50142 6.61112 6.89450 7.12691 7.41290 7.97803 8.77290 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.026464 B = 0.001840 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.780448 B =15216.947221 C =15465.988110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.115 4.115 3 C -0.099 4.099 4 C -0.108 4.108 5 C -0.147 4.147 6 C 0.527 3.473 7 O -0.586 6.586 8 N -0.619 5.619 9 C 0.098 3.902 10 C -0.132 4.132 11 C -0.093 4.093 12 H 0.084 0.916 13 C 0.101 3.899 14 H 0.062 0.938 15 C -0.143 4.143 16 N -0.680 5.680 17 C 0.062 3.938 18 C 0.449 3.551 19 O -0.613 6.613 20 N -0.592 5.592 21 C -0.328 4.328 22 H 0.056 0.944 23 C -0.015 4.015 24 N -0.934 5.934 25 Si 0.964 3.036 26 H -0.259 1.259 27 H -0.276 1.276 28 H -0.230 1.230 29 C 0.117 3.883 30 H 0.027 0.973 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.114 0.886 36 H 0.060 0.940 37 H 0.050 0.950 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.050 0.950 46 H 0.055 0.945 47 H 0.069 0.931 48 H 0.347 0.653 49 H 0.078 0.922 50 H 0.109 0.891 51 H 0.389 0.611 52 H 0.279 0.721 53 H 0.072 0.928 54 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.625 11.444 -29.094 31.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.152 4.152 3 C -0.120 4.120 4 C -0.146 4.146 5 C -0.204 4.204 6 C 0.318 3.682 7 O -0.467 6.467 8 N -0.352 5.352 9 C -0.024 4.024 10 C -0.170 4.170 11 C -0.112 4.112 12 H 0.102 0.898 13 C -0.009 4.009 14 H 0.080 0.920 15 C -0.201 4.201 16 N -0.314 5.314 17 C -0.070 4.070 18 C 0.237 3.763 19 O -0.497 6.497 20 N -0.233 5.233 21 C -0.457 4.457 22 H 0.074 0.926 23 C -0.214 4.214 24 N -0.575 5.575 25 Si 0.784 3.216 26 H -0.184 1.184 27 H -0.201 1.201 28 H -0.153 1.153 29 C -0.007 4.007 30 H 0.046 0.954 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.117 0.883 35 H 0.132 0.868 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.103 0.897 44 H 0.109 0.891 45 H 0.069 0.931 46 H 0.074 0.926 47 H 0.088 0.912 48 H 0.167 0.833 49 H 0.096 0.904 50 H 0.127 0.873 51 H 0.225 0.775 52 H 0.088 0.912 53 H 0.090 0.910 54 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.825 11.124 -28.870 31.313 hybrid contribution 1.003 0.614 0.754 1.397 sum -3.823 11.738 -28.116 30.707 Atomic orbital electron populations 1.21870 0.96374 1.02134 1.01055 1.21625 0.95842 0.93351 1.04374 1.21447 1.02922 0.96715 0.90900 1.21391 1.00848 0.98735 0.93583 1.21791 1.01550 1.01289 0.95803 1.20981 0.80048 0.82305 0.84861 1.90673 1.36204 1.32673 1.87129 1.48624 1.39817 1.41170 1.05634 1.22331 0.90910 0.92120 0.97038 1.22787 0.97176 1.03338 0.93691 1.22392 0.98653 0.97453 0.92721 0.89771 1.21478 0.98059 0.91892 0.89439 0.92005 1.21857 0.96979 0.99903 1.01356 1.60114 1.49244 1.11940 1.10082 1.21671 0.98459 0.94303 0.92585 1.20983 0.81046 0.91013 0.83218 1.90542 1.56931 1.26690 1.75564 1.42042 1.50486 1.09439 1.21376 1.19009 1.33714 0.90077 1.02934 0.92617 1.26106 0.96611 1.03736 0.94925 1.69803 1.39729 1.34173 1.13786 0.85375 0.78748 0.77160 0.80305 1.18362 1.20080 1.15322 1.22165 1.00270 0.96657 0.81579 0.95375 0.92033 0.91416 0.90553 0.88302 0.86818 0.92152 0.93113 0.91474 0.92312 0.91674 0.89449 0.89330 0.89683 0.89070 0.93109 0.92618 0.91171 0.83254 0.90383 0.87261 0.77518 0.91190 0.90951 0.91762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.33 71.98 0.67 -1.51 16 2 C -0.11 -1.18 5.30 30.59 0.16 -1.01 16 3 C -0.10 -1.29 1.91 -11.54 -0.02 -1.31 16 4 C -0.11 -1.52 4.43 30.60 0.14 -1.38 16 5 C -0.15 -1.27 9.53 71.98 0.69 -0.58 16 6 C 0.53 10.74 6.06 87.66 0.53 11.27 16 7 O -0.59 -16.99 16.30 -3.03 -0.05 -17.04 16 8 N -0.62 -10.59 3.33 -811.82 -2.70 -13.29 16 9 C 0.10 1.11 6.19 86.72 0.54 1.64 16 10 C -0.13 -1.73 5.69 31.78 0.18 -1.55 16 11 C -0.09 -1.55 2.67 -9.40 -0.03 -1.58 16 12 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 13 C 0.10 1.92 2.18 44.92 0.10 2.02 16 14 H 0.06 1.02 7.74 -2.39 -0.02 1.00 16 15 C -0.14 -2.77 9.19 71.98 0.66 -2.10 16 16 N -0.68 -18.30 5.93 -495.58 -2.94 -21.24 16 17 C 0.06 1.79 5.97 85.56 0.51 2.30 16 18 C 0.45 19.67 7.82 87.66 0.69 20.36 16 19 O -0.61 -33.14 15.78 -3.05 -0.05 -33.19 16 20 N -0.59 -27.31 5.09 -306.98 -1.56 -28.87 16 21 C -0.33 -19.00 10.16 84.04 0.85 -18.15 16 22 H 0.06 3.85 7.39 -2.91 -0.02 3.83 16 23 C -0.02 -0.83 5.50 84.93 0.47 -0.37 16 24 N -0.93 -55.92 13.96 21.66 0.30 -55.62 16 25 Si 0.96 38.24 27.74 68.60 1.90 40.14 16 26 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 27 H -0.28 -10.88 7.11 99.48 0.71 -10.17 16 28 H -0.23 -7.58 6.52 99.48 0.65 -6.93 16 29 C 0.12 2.08 5.26 86.86 0.46 2.54 16 30 H 0.03 0.53 7.45 -2.39 -0.02 0.51 16 31 H 0.06 0.86 6.05 -2.39 -0.01 0.85 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.08 0.72 5.36 -2.39 -0.01 0.71 16 34 H 0.10 0.63 6.82 -2.38 -0.02 0.61 16 35 H 0.11 1.02 8.03 -2.39 -0.02 1.00 16 36 H 0.06 1.03 6.01 -2.39 -0.01 1.01 16 37 H 0.05 0.87 8.08 -2.39 -0.02 0.85 16 38 H 0.07 0.46 6.89 -2.39 -0.02 0.45 16 39 H 0.06 0.49 8.14 -2.39 -0.02 0.48 16 40 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 41 H 0.09 0.80 5.68 -2.39 -0.01 0.79 16 42 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 43 H 0.08 1.03 7.99 -2.38 -0.02 1.01 16 44 H 0.09 1.23 7.83 -2.39 -0.02 1.21 16 45 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.05 1.09 7.45 -2.39 -0.02 1.07 16 47 H 0.07 1.14 7.23 -2.39 -0.02 1.12 16 48 H 0.35 9.71 7.08 -89.69 -0.63 9.08 16 49 H 0.08 1.78 8.05 -2.39 -0.02 1.76 16 50 H 0.11 2.74 7.44 -2.38 -0.02 2.72 16 51 H 0.39 14.81 5.76 -92.71 -0.53 14.28 16 52 H 0.28 15.24 8.31 -92.71 -0.77 14.47 16 53 H 0.07 1.24 8.04 -2.39 -0.02 1.22 16 54 H 0.06 1.35 7.98 -2.38 -0.02 1.33 16 Total: -1.00 -79.96 413.53 1.17 -78.79 By element: Atomic # 1 Polarization: 40.07 SS G_CDS: -0.33 Total: 39.75 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: 6.59 Total: 10.58 kcal Atomic # 7 Polarization: -112.13 SS G_CDS: -6.90 Total: -119.03 kcal Atomic # 8 Polarization: -50.13 SS G_CDS: -0.10 Total: -50.23 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 1.90 Total: 40.14 kcal Total: -79.96 1.17 -78.79 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278984548.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.020 kcal (2) G-P(sol) polarization free energy of solvation -79.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds