Wall clock time and date at job start Sat Apr 11 2020 05:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46695 * 2 1 4 4 C 1.52992 * 109.47279 * 120.00234 * 2 1 3 5 5 C 1.52997 * 109.47482 * 65.00040 * 4 2 1 6 6 C 1.50701 * 109.47212 * 179.97438 * 5 4 2 7 7 O 1.21280 * 119.99781 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99795 * 179.97438 * 6 5 4 9 9 C 1.47021 * 125.64749 * 0.03050 * 8 6 5 10 10 C 1.54322 * 107.26600 * 181.01771 * 9 8 6 11 11 C 1.55157 * 102.94411 * 22.19368 * 10 9 8 12 12 H 1.09007 * 111.00277 * 82.57047 * 11 10 9 13 13 C 1.53006 * 111.00212 * 206.38187 * 11 10 9 14 14 C 1.52995 * 109.47389 * 293.54368 * 13 11 10 15 15 N 1.46899 * 109.47291 * 180.02562 * 14 13 11 16 16 C 1.46896 * 110.99950 * 180.02562 * 15 14 13 17 17 C 1.50701 * 109.47111 * 179.97438 * 16 15 14 18 18 O 1.21290 * 119.99697 * 359.97438 * 17 16 15 19 19 N 1.34782 * 120.00141 * 179.97438 * 17 16 15 20 20 C 1.37094 * 119.99948 * 179.97438 * 19 17 16 21 21 H 1.08008 * 119.99929 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00114 * 180.02562 * 20 19 17 23 23 N 1.31413 * 119.99520 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00295 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.46577 * 59.99879 * 24 22 20 26 26 H 1.48492 * 109.47160 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47097 * 300.00426 * 24 22 20 28 28 C 1.47426 * 125.64500 * 179.71753 * 8 6 5 29 29 H 1.09000 * 109.47104 * 299.99452 * 1 2 3 30 30 H 1.08993 * 109.47832 * 59.99829 * 1 2 3 31 31 H 1.09001 * 109.46924 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46580 * 240.00538 * 2 1 3 33 33 H 1.09007 * 109.46964 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47224 * 300.00155 * 3 2 1 35 35 H 1.09000 * 109.47346 * 60.00132 * 3 2 1 36 36 H 1.09002 * 109.47103 * 304.99792 * 4 2 1 37 37 H 1.08998 * 109.46862 * 185.00605 * 4 2 1 38 38 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 39 39 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 40 40 H 1.08997 * 109.87932 * 300.43017 * 9 8 6 41 41 H 1.08990 * 109.88539 * 61.60408 * 9 8 6 42 42 H 1.09002 * 110.72017 * 140.55606 * 10 9 8 43 43 H 1.09000 * 110.72561 * 263.82345 * 10 9 8 44 44 H 1.08996 * 109.47044 * 53.54656 * 13 11 10 45 45 H 1.09004 * 109.46628 * 173.54302 * 13 11 10 46 46 H 1.09001 * 109.47590 * 300.00476 * 14 13 11 47 47 H 1.09006 * 109.46886 * 60.00009 * 14 13 11 48 48 H 1.00902 * 110.99866 * 303.95649 * 15 14 13 49 49 H 1.09008 * 109.47068 * 299.99608 * 16 15 14 50 50 H 1.08996 * 109.47911 * 59.99625 * 16 15 14 51 51 H 0.96998 * 119.99931 * 0.02562 * 19 17 16 52 52 H 0.97001 * 119.99580 * 180.02562 * 23 22 20 53 53 H 1.08999 * 110.36516 * 274.75469 * 28 8 6 54 54 H 1.08997 * 110.36737 * 37.07001 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6353 -2.1955 1.1879 6 6 2.1383 -2.9060 2.4180 7 8 2.7589 -2.2934 3.2610 8 7 1.8975 -4.2220 2.5819 9 6 1.1614 -5.0817 1.6435 10 6 1.1149 -6.4963 2.2585 11 6 1.3361 -6.2256 3.7702 12 1 0.4034 -5.9392 4.2563 13 6 1.9597 -7.4410 4.4594 14 6 0.9622 -8.6010 4.4486 15 7 1.5607 -9.7677 5.1109 16 6 0.6295 -10.9038 5.1188 17 6 1.2771 -12.0793 5.8042 18 8 2.4038 -11.9806 6.2424 19 7 0.6044 -13.2405 5.9301 20 6 1.1938 -14.3100 6.5531 21 1 2.1973 -14.2223 6.9427 22 6 0.5005 -15.5072 6.6825 23 7 -0.7200 -15.6143 6.2072 24 14 1.3037 -16.9648 7.5308 25 1 1.6477 -16.5966 8.9278 26 1 0.3626 -18.1134 7.5385 27 1 2.5399 -17.3433 6.8000 28 6 2.3343 -5.0390 3.7287 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8932 -0.5138 -0.8901 33 1 3.1300 1.4426 -0.0005 34 1 1.6765 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6054 -0.2618 2.1369 37 1 3.1263 -0.6442 1.2950 38 1 2.0699 -2.6550 0.3001 39 1 0.5490 -2.2724 1.1420 40 1 0.1484 -4.7022 1.5098 41 1 1.6782 -5.1113 0.6844 42 1 0.1430 -6.9593 2.0878 43 1 1.9151 -7.1180 1.8569 44 1 2.8649 -7.7352 3.9282 45 1 2.2094 -7.1861 5.4894 46 1 0.0570 -8.3069 4.9798 47 1 0.7125 -8.8559 3.4186 48 1 2.4357 -10.0207 4.6766 49 1 -0.2784 -10.6256 5.6541 50 1 0.3781 -11.1748 4.0935 51 1 -0.2965 -13.3195 5.5793 52 1 -1.2042 -16.4499 6.2979 53 1 3.3506 -5.4004 3.5717 54 1 2.2746 -4.4611 4.6509 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279951543.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:40 Heat of formation + Delta-G solvation = -125.463334 kcal Electronic energy + Delta-G solvation = -28317.512359 eV Core-core repulsion = 24286.828264 eV Total energy + Delta-G solvation = -4030.684095 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -41.18902 -40.14631 -39.08511 -37.43178 -36.96686 -35.88176 -34.05812 -33.24084 -31.96079 -30.79756 -29.57951 -27.99029 -27.68718 -26.05668 -25.03581 -23.71402 -23.03249 -21.36801 -20.91359 -20.83509 -20.08031 -19.87052 -18.11949 -17.81029 -17.35464 -17.02216 -16.76248 -16.44078 -16.12009 -15.94059 -15.66219 -15.37526 -15.25392 -14.88187 -14.69829 -14.48951 -14.32263 -14.08245 -13.79359 -13.75911 -13.53710 -13.39396 -13.25054 -13.05879 -13.01404 -12.96554 -12.71042 -12.64276 -12.42785 -12.26103 -12.12907 -12.10919 -11.85792 -11.67218 -11.59507 -11.51398 -11.50071 -11.45406 -11.43170 -10.89176 -10.33660 -10.00874 -9.67551 -9.26644 -8.46064 -5.94826 1.40438 1.42489 1.53258 1.60090 1.98308 2.06398 2.30100 2.94843 3.21428 3.38183 3.53980 3.68389 3.77417 3.86850 3.88879 3.97212 4.17735 4.27464 4.33038 4.34034 4.35374 4.40427 4.46292 4.52584 4.55165 4.56316 4.62380 4.68225 4.73326 4.76504 4.81086 4.85290 4.86495 4.92885 4.97011 5.04584 5.08787 5.14091 5.16492 5.18614 5.30274 5.32852 5.35159 5.41317 5.44159 5.48600 5.54085 5.91975 6.14914 6.45794 6.51568 6.61274 7.13037 7.13355 7.57213 8.12879 8.71071 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.046176 B = 0.001272 C = 0.001249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.233246 B =22009.996853 C =22409.008107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.093 4.093 3 C -0.150 4.150 4 C -0.097 4.097 5 C -0.127 4.127 6 C 0.516 3.484 7 O -0.594 6.594 8 N -0.622 5.622 9 C 0.097 3.903 10 C -0.125 4.125 11 C -0.086 4.086 12 H 0.091 0.909 13 C -0.099 4.099 14 C 0.065 3.935 15 N -0.690 5.690 16 C 0.067 3.933 17 C 0.435 3.565 18 O -0.625 6.625 19 N -0.572 5.572 20 C -0.337 4.337 21 H 0.078 0.922 22 C -0.010 4.010 23 N -0.919 5.919 24 Si 0.991 3.009 25 H -0.273 1.273 26 H -0.269 1.269 27 H -0.271 1.271 28 C 0.105 3.895 29 H 0.047 0.953 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.051 0.949 34 H 0.064 0.936 35 H 0.048 0.952 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.102 0.898 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.061 0.939 46 H 0.075 0.925 47 H 0.049 0.951 48 H 0.343 0.657 49 H 0.103 0.897 50 H 0.069 0.931 51 H 0.397 0.603 52 H 0.278 0.722 53 H 0.064 0.936 54 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.099 28.051 -18.574 33.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 C -0.207 4.207 4 C -0.135 4.135 5 C -0.166 4.166 6 C 0.307 3.693 7 O -0.476 6.476 8 N -0.355 5.355 9 C -0.025 4.025 10 C -0.163 4.163 11 C -0.106 4.106 12 H 0.109 0.891 13 C -0.138 4.138 14 C -0.064 4.064 15 N -0.323 5.323 16 C -0.066 4.066 17 C 0.222 3.778 18 O -0.512 6.512 19 N -0.209 5.209 20 C -0.467 4.467 21 H 0.096 0.904 22 C -0.210 4.210 23 N -0.560 5.560 24 Si 0.815 3.185 25 H -0.198 1.198 26 H -0.194 1.194 27 H -0.197 1.197 28 C -0.018 4.018 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.121 0.879 43 H 0.099 0.901 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.094 0.906 47 H 0.067 0.933 48 H 0.162 0.838 49 H 0.121 0.879 50 H 0.087 0.913 51 H 0.231 0.769 52 H 0.087 0.913 53 H 0.082 0.918 54 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.347 28.566 -17.245 33.450 hybrid contribution 0.191 -1.156 -0.131 1.179 sum -2.156 27.409 -17.376 32.524 Atomic orbital electron populations 1.21921 0.94532 1.02460 1.01867 1.21112 0.96432 0.96120 0.97430 1.21854 1.00888 0.96061 1.01934 1.21368 1.00600 0.93296 0.98285 1.21754 1.04026 0.95859 0.94968 1.21204 0.78808 0.80476 0.88848 1.90690 1.43564 1.66395 1.46908 1.48711 1.55358 1.08131 1.23330 1.22312 0.97398 0.89953 0.92828 1.22789 1.04500 0.95591 0.93426 1.22252 0.98361 0.93021 0.96925 0.89107 1.21372 0.98221 0.93149 1.01013 1.22015 0.97843 0.89341 0.97187 1.60059 1.06398 1.05339 1.60467 1.21516 0.96300 0.88995 0.99762 1.20981 0.87127 0.85007 0.84636 1.90489 1.21632 1.84222 1.54861 1.41920 1.16833 1.10291 1.51902 1.19641 1.00785 0.91058 1.35196 0.90428 1.26007 0.96144 1.00981 0.97883 1.69662 1.11480 1.28627 1.46254 0.85013 0.77990 0.76967 0.78523 1.19839 1.19387 1.19670 1.22292 0.98293 0.91816 0.89368 0.93355 0.91990 0.91521 0.90035 0.93020 0.91722 0.93264 0.93078 0.93003 0.86762 0.86648 0.89261 0.89523 0.87948 0.90084 0.91554 0.92057 0.90612 0.93293 0.83821 0.87918 0.91301 0.76913 0.91266 0.91804 0.92408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.95 71.98 0.64 -0.42 16 2 C -0.09 -0.81 2.92 -10.80 -0.03 -0.84 16 3 C -0.15 -1.42 9.19 71.98 0.66 -0.76 16 4 C -0.10 -1.30 3.97 30.59 0.12 -1.18 16 5 C -0.13 -1.36 4.65 29.85 0.14 -1.22 16 6 C 0.52 10.07 7.85 87.66 0.69 10.76 16 7 O -0.59 -17.49 16.24 -3.03 -0.05 -17.54 16 8 N -0.62 -9.89 3.32 -811.39 -2.70 -12.59 16 9 C 0.10 0.78 6.49 86.73 0.56 1.34 16 10 C -0.13 -1.10 5.59 31.78 0.18 -0.92 16 11 C -0.09 -1.16 3.08 -9.32 -0.03 -1.19 16 12 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 13 C -0.10 -1.74 4.99 30.59 0.15 -1.58 16 14 C 0.06 1.28 5.53 86.30 0.48 1.76 16 15 N -0.69 -20.79 6.13 -517.93 -3.17 -23.96 16 16 C 0.07 2.20 6.17 85.56 0.53 2.73 16 17 C 0.43 20.60 7.82 87.66 0.69 21.29 16 18 O -0.63 -34.85 15.78 -3.06 -0.05 -34.90 16 19 N -0.57 -29.21 5.29 -306.97 -1.62 -30.83 16 20 C -0.34 -19.18 9.68 84.04 0.81 -18.36 16 21 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 22 C -0.01 -0.54 5.50 84.93 0.47 -0.08 16 23 N -0.92 -49.21 13.05 21.66 0.28 -48.92 16 24 Si 0.99 42.74 29.55 68.60 2.03 44.77 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 26 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 27 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 28 C 0.11 1.88 6.38 86.93 0.55 2.43 16 29 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.07 0.33 6.56 -2.39 -0.02 0.32 16 32 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 34 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 35 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.05 0.87 8.10 -2.39 -0.02 0.85 16 37 H 0.05 0.87 8.10 -2.39 -0.02 0.85 16 38 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.12 0.76 6.56 -2.39 -0.02 0.75 16 40 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.10 0.61 8.13 -2.39 -0.02 0.59 16 43 H 0.08 0.74 8.01 -2.39 -0.02 0.72 16 44 H 0.07 1.17 8.11 -2.39 -0.02 1.15 16 45 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.05 0.79 7.51 -2.38 -0.02 0.77 16 48 H 0.34 10.89 8.43 -89.69 -0.76 10.14 16 49 H 0.10 3.07 8.14 -2.38 -0.02 3.05 16 50 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 51 H 0.40 19.09 7.90 -92.71 -0.73 18.36 16 52 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 53 H 0.06 1.20 8.04 -2.39 -0.02 1.18 16 54 H 0.06 1.26 8.03 -2.39 -0.02 1.24 16 Total: -1.00 -75.07 432.38 0.72 -74.35 By element: Atomic # 1 Polarization: 36.50 SS G_CDS: -0.61 Total: 35.88 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: 6.61 Total: 13.75 kcal Atomic # 7 Polarization: -109.10 SS G_CDS: -7.21 Total: -116.31 kcal Atomic # 8 Polarization: -52.34 SS G_CDS: -0.10 Total: -52.44 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -75.07 0.72 -74.35 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279951543.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.109 kcal (2) G-P(sol) polarization free energy of solvation -75.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds