Wall clock time and date at job start Sat Apr 11 2020 05:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47294 * 2 1 4 4 C 1.53001 * 109.47252 * 120.00341 * 2 1 3 5 5 C 1.53003 * 109.47267 * 175.00374 * 4 2 1 6 6 C 1.50699 * 109.46748 * 179.97438 * 5 4 2 7 7 O 1.21275 * 120.00510 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99378 * 179.97438 * 6 5 4 9 9 C 1.48141 * 127.84231 * 359.97438 * 8 6 5 10 10 C 1.54387 * 104.62167 * 219.58762 * 9 8 6 11 11 H 1.09004 * 110.33997 * 95.00108 * 10 9 8 12 12 N 1.46902 * 110.34522 * 217.15813 * 10 9 8 13 13 C 1.46898 * 110.99965 * 273.54780 * 12 10 9 14 14 C 1.50696 * 109.46845 * 180.02562 * 13 12 10 15 15 O 1.21294 * 120.00251 * 359.97438 * 14 13 12 16 16 N 1.34782 * 120.00007 * 179.97438 * 14 13 12 17 17 C 1.37093 * 120.00419 * 179.97438 * 16 14 13 18 18 H 1.08006 * 119.99686 * 0.02562 * 17 16 14 19 19 C 1.38941 * 120.00482 * 180.02562 * 17 16 14 20 20 N 1.31413 * 120.00649 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 119.99877 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.47268 * 90.00224 * 21 19 17 23 23 H 1.48503 * 109.47256 * 210.00411 * 21 19 17 24 24 H 1.48503 * 109.46889 * 330.00252 * 21 19 17 25 25 C 1.54590 * 104.99065 * 336.14662 * 10 9 8 26 26 C 1.52994 * 110.43949 * 241.14640 * 25 10 9 27 27 C 1.53005 * 110.38896 * 118.79179 * 25 10 9 28 28 C 1.48151 * 127.83369 * 180.02562 * 8 6 5 29 29 H 1.08997 * 109.47004 * 300.00135 * 1 2 3 30 30 H 1.09005 * 109.47229 * 59.99889 * 1 2 3 31 31 H 1.09003 * 109.47147 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47182 * 240.00261 * 2 1 3 33 33 H 1.09004 * 109.46793 * 60.00022 * 3 2 1 34 34 H 1.08994 * 109.47508 * 179.97438 * 3 2 1 35 35 H 1.09005 * 109.47073 * 300.00206 * 3 2 1 36 36 H 1.08993 * 109.47217 * 54.99710 * 4 2 1 37 37 H 1.09006 * 109.46569 * 294.99776 * 4 2 1 38 38 H 1.08996 * 109.47055 * 59.99415 * 5 4 2 39 39 H 1.09002 * 109.46467 * 299.99578 * 5 4 2 40 40 H 1.09001 * 110.41010 * 338.37809 * 9 8 6 41 41 H 1.09004 * 110.40547 * 100.80247 * 9 8 6 42 42 H 1.00901 * 110.99932 * 37.50100 * 12 10 9 43 43 H 1.08999 * 109.46738 * 299.99864 * 13 12 10 44 44 H 1.08998 * 109.47328 * 59.99965 * 13 12 10 45 45 H 0.97000 * 119.99739 * 359.97438 * 16 14 13 46 46 H 0.97001 * 120.00428 * 180.02562 * 20 19 17 47 47 H 1.09012 * 109.47456 * 176.86658 * 26 25 10 48 48 H 1.09000 * 109.47598 * 296.86352 * 26 25 10 49 49 H 1.09000 * 109.47230 * 56.87198 * 26 25 10 50 50 H 1.08995 * 109.46729 * 303.16295 * 27 25 10 51 51 H 1.08995 * 109.47274 * 63.16389 * 27 25 10 52 52 H 1.08996 * 109.46897 * 183.16545 * 27 25 10 53 53 H 1.09002 * 110.40666 * 259.19717 * 28 8 6 54 54 H 1.09002 * 110.40751 * 21.51159 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8310 1.1880 6 6 4.0671 -1.5410 2.4187 7 8 3.2829 -1.9213 3.2620 8 7 5.3880 -1.7532 2.5822 9 6 6.4902 -1.3668 1.6709 10 6 7.4649 -2.5636 1.7088 11 1 7.2629 -3.2430 0.8807 12 7 8.8551 -2.0920 1.6539 13 6 9.2951 -1.9111 0.2641 14 6 10.7226 -1.4285 0.2480 15 8 11.3150 -1.2521 1.2916 16 7 11.3411 -1.1928 -0.9261 17 6 12.6396 -0.7532 -0.9408 18 1 13.1671 -0.5962 -0.0115 19 6 13.2770 -0.5098 -2.1511 20 7 14.5219 -0.0889 -2.1652 21 14 12.3650 -0.7820 -3.7585 22 1 11.6743 0.4715 -4.1542 23 1 13.3319 -1.1698 -4.8168 24 1 11.3636 -1.8644 -3.5821 25 6 7.1856 -3.2641 3.0582 26 6 8.4399 -3.2554 3.9343 27 6 6.7082 -4.6990 2.8252 28 6 6.0669 -2.4269 3.7136 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6054 -1.7198 1.2951 37 1 1.7516 -0.1583 2.1369 38 1 3.9994 0.1675 1.1420 39 1 3.8531 -1.3940 0.3002 40 1 6.1123 -1.2162 0.6597 41 1 6.9829 -0.4639 2.0318 42 1 8.9692 -1.2405 2.1831 43 1 9.2273 -2.8616 -0.2651 44 1 8.6570 -1.1759 -0.2263 45 1 10.8675 -1.3342 -1.7607 46 1 14.9668 0.0814 -3.0102 47 1 8.2106 -3.7027 4.9017 48 1 9.2279 -3.8290 3.4465 49 1 8.7747 -2.2283 4.0793 50 1 5.8233 -4.6885 2.1889 51 1 7.4987 -5.2705 2.3389 52 1 6.4624 -5.1599 3.7818 53 1 6.4933 -1.6899 4.3942 54 1 5.3691 -3.0744 4.2445 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284262359.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:32 Heat of formation + Delta-G solvation = -104.936813 kcal Electronic energy + Delta-G solvation = -30291.636582 eV Core-core repulsion = 26261.842584 eV Total energy + Delta-G solvation = -4029.793998 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.48326 -40.25960 -39.48395 -37.42409 -36.15333 -35.44691 -34.59881 -33.69266 -31.91936 -30.08676 -28.34748 -27.99522 -27.81006 -27.47898 -25.52845 -24.75708 -23.34776 -21.26644 -20.85961 -20.42706 -20.23273 -19.75760 -18.04279 -17.65259 -17.24117 -17.10801 -16.61353 -16.29076 -16.23806 -15.77479 -15.34178 -15.16047 -15.03608 -14.93651 -14.54871 -14.52558 -14.32761 -14.24401 -13.96564 -13.81181 -13.70101 -13.27162 -13.18204 -13.05556 -13.02532 -12.81651 -12.72122 -12.66905 -12.47275 -12.37790 -12.23324 -11.96171 -11.86717 -11.68362 -11.63072 -11.51635 -11.48044 -11.46588 -11.44578 -10.89567 -10.37255 -10.20702 -9.83839 -9.23170 -8.37682 -5.98373 1.33098 1.38691 1.47691 1.59015 1.89200 2.02296 2.26389 2.75331 3.19461 3.32277 3.40762 3.67795 3.76639 3.86577 3.90376 3.97683 4.10311 4.17449 4.24422 4.25162 4.34056 4.40026 4.46184 4.51798 4.57352 4.62873 4.69295 4.72170 4.77362 4.81092 4.83109 4.85278 4.89566 4.95542 4.98919 5.06281 5.11697 5.14212 5.14685 5.20377 5.32694 5.35515 5.39485 5.48184 5.53703 5.56421 5.63717 5.95482 6.10082 6.38079 6.53269 6.63856 6.93063 7.11004 7.45099 8.02404 8.80001 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010039 B = 0.002573 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2788.420720 B =10879.251559 C =13079.535454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.152 4.152 4 C -0.094 4.094 5 C -0.131 4.131 6 C 0.528 3.472 7 O -0.588 6.588 8 N -0.619 5.619 9 C 0.071 3.929 10 C 0.087 3.913 11 H 0.106 0.894 12 N -0.664 5.664 13 C 0.060 3.940 14 C 0.449 3.551 15 O -0.614 6.614 16 N -0.592 5.592 17 C -0.325 4.325 18 H 0.054 0.946 19 C -0.018 4.018 20 N -0.937 5.937 21 Si 0.965 3.035 22 H -0.256 1.256 23 H -0.280 1.280 24 H -0.228 1.228 25 C -0.063 4.063 26 C -0.112 4.112 27 C -0.129 4.129 28 C 0.109 3.891 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.081 0.919 33 H 0.048 0.952 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.051 0.949 38 H 0.110 0.890 39 H 0.115 0.885 40 H 0.108 0.892 41 H 0.076 0.924 42 H 0.348 0.652 43 H 0.115 0.885 44 H 0.085 0.915 45 H 0.390 0.610 46 H 0.278 0.722 47 H 0.052 0.948 48 H 0.055 0.945 49 H 0.048 0.952 50 H 0.052 0.948 51 H 0.062 0.938 52 H 0.059 0.941 53 H 0.071 0.929 54 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.008 -3.486 0.497 28.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 C -0.209 4.209 4 C -0.133 4.133 5 C -0.171 4.171 6 C 0.319 3.681 7 O -0.469 6.469 8 N -0.352 5.352 9 C -0.054 4.054 10 C -0.024 4.024 11 H 0.124 0.876 12 N -0.296 5.296 13 C -0.072 4.072 14 C 0.238 3.762 15 O -0.498 6.498 16 N -0.234 5.234 17 C -0.455 4.455 18 H 0.072 0.928 19 C -0.217 4.217 20 N -0.578 5.578 21 Si 0.785 3.215 22 H -0.181 1.181 23 H -0.205 1.205 24 H -0.151 1.151 25 C -0.064 4.064 26 C -0.170 4.170 27 C -0.187 4.187 28 C -0.014 4.014 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.128 0.872 39 H 0.133 0.867 40 H 0.126 0.874 41 H 0.095 0.905 42 H 0.168 0.832 43 H 0.132 0.868 44 H 0.103 0.897 45 H 0.226 0.774 46 H 0.087 0.913 47 H 0.071 0.929 48 H 0.074 0.926 49 H 0.067 0.933 50 H 0.071 0.929 51 H 0.081 0.919 52 H 0.078 0.922 53 H 0.089 0.911 54 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -27.678 -4.104 1.573 28.025 hybrid contribution 0.058 0.902 -0.714 1.152 sum -27.620 -3.202 0.859 27.819 Atomic orbital electron populations 1.21840 0.95041 1.01798 1.01921 1.21123 0.96002 0.96516 0.97570 1.21928 1.01486 0.95604 1.01860 1.21351 0.93018 1.00690 0.98196 1.21781 0.97724 1.02308 0.95255 1.21042 0.79791 0.78607 0.88676 1.90681 1.55333 1.54007 1.46851 1.48984 1.05127 1.57719 1.23351 1.23443 0.87900 0.98256 0.95783 1.22699 0.85386 0.95749 0.98568 0.87567 1.60235 1.19819 1.38820 1.10731 1.21716 0.90586 1.03018 0.91900 1.21042 0.90354 0.81731 0.83118 1.90561 1.68840 1.56924 1.33458 1.42036 1.12144 1.61513 1.07747 1.18983 0.88860 1.42859 0.94768 0.92782 1.26139 0.96586 0.96219 1.02713 1.69813 1.13137 1.46076 1.28793 0.85361 0.79051 0.80431 0.76633 1.18070 1.20521 1.15108 1.21492 0.94571 0.95508 0.94877 1.21447 0.95879 1.01827 0.97856 1.21773 1.00775 0.94206 1.01899 1.22500 0.93672 0.95792 0.89405 0.93179 0.91848 0.92775 0.90088 0.93261 0.91915 0.92076 0.92538 0.92975 0.87225 0.86699 0.87364 0.90537 0.83185 0.86753 0.89735 0.77446 0.91284 0.92874 0.92590 0.93266 0.92909 0.91880 0.92229 0.91092 0.91069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.19 71.98 0.66 -0.96 16 2 C -0.09 -1.01 2.92 -10.79 -0.03 -1.05 16 3 C -0.15 -1.53 8.95 71.98 0.64 -0.89 16 4 C -0.09 -1.39 3.97 30.60 0.12 -1.27 16 5 C -0.13 -1.71 4.44 29.85 0.13 -1.58 16 6 C 0.53 10.96 7.91 87.66 0.69 11.65 16 7 O -0.59 -17.26 16.25 -3.01 -0.05 -17.31 16 8 N -0.62 -11.23 3.32 -808.05 -2.68 -13.91 16 9 C 0.07 0.99 6.51 86.53 0.56 1.56 16 10 C 0.09 1.46 3.00 45.93 0.14 1.60 16 11 H 0.11 1.55 7.44 -2.39 -0.02 1.53 16 12 N -0.66 -15.70 4.29 -490.36 -2.10 -17.80 16 13 C 0.06 1.49 6.00 85.56 0.51 2.00 16 14 C 0.45 18.49 7.82 87.65 0.69 19.17 16 15 O -0.61 -31.89 15.78 -3.07 -0.05 -31.94 16 16 N -0.59 -26.09 5.09 -306.99 -1.56 -27.66 16 17 C -0.33 -18.40 10.16 84.04 0.85 -17.55 16 18 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 19 C -0.02 -0.99 5.50 84.92 0.47 -0.52 16 20 N -0.94 -55.62 13.96 21.66 0.30 -55.32 16 21 Si 0.97 37.14 27.74 68.60 1.90 39.04 16 22 H -0.26 -9.26 7.11 99.48 0.71 -8.56 16 23 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 24 H -0.23 -7.18 6.52 99.48 0.65 -6.54 16 25 C -0.06 -1.13 1.04 -51.19 -0.05 -1.18 16 26 C -0.11 -2.36 7.45 71.98 0.54 -1.82 16 27 C -0.13 -2.15 8.25 71.98 0.59 -1.56 16 28 C 0.11 2.11 6.13 86.52 0.53 2.64 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.06 0.56 6.56 -2.39 -0.02 0.54 16 35 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 36 H 0.06 0.98 8.10 -2.39 -0.02 0.96 16 37 H 0.05 0.95 8.10 -2.38 -0.02 0.93 16 38 H 0.11 1.13 6.56 -2.39 -0.02 1.11 16 39 H 0.11 1.01 7.95 -2.39 -0.02 0.99 16 40 H 0.11 0.97 7.30 -2.39 -0.02 0.95 16 41 H 0.08 1.13 7.60 -2.39 -0.02 1.11 16 42 H 0.35 9.03 7.27 -89.69 -0.65 8.38 16 43 H 0.11 2.37 8.08 -2.39 -0.02 2.35 16 44 H 0.08 1.53 8.11 -2.39 -0.02 1.51 16 45 H 0.39 13.92 5.76 -92.71 -0.53 13.38 16 46 H 0.28 15.09 8.31 -92.71 -0.77 14.32 16 47 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 48 H 0.05 1.39 7.97 -2.39 -0.02 1.37 16 49 H 0.05 1.13 7.33 -2.39 -0.02 1.11 16 50 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 51 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 52 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 53 H 0.07 1.38 7.86 -2.39 -0.02 1.36 16 54 H 0.07 1.55 7.60 -2.39 -0.02 1.53 16 Total: -1.00 -78.00 423.09 2.45 -75.55 By element: Atomic # 1 Polarization: 39.47 SS G_CDS: -0.36 Total: 39.11 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 7.05 Total: 10.24 kcal Atomic # 7 Polarization: -108.65 SS G_CDS: -6.04 Total: -114.70 kcal Atomic # 8 Polarization: -49.15 SS G_CDS: -0.10 Total: -49.24 kcal Atomic # 14 Polarization: 37.14 SS G_CDS: 1.90 Total: 39.04 kcal Total: -78.00 2.45 -75.55 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284262359.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.384 kcal (2) G-P(sol) polarization free energy of solvation -78.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds