Wall clock time and date at job start Sat Apr 11 2020 05:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47257 * 2 1 4 4 C 1.52999 * 109.47503 * 294.76361 * 3 2 1 5 5 C 1.52999 * 109.46626 * 295.00240 * 4 3 2 6 6 C 1.53005 * 109.47134 * 54.76018 * 3 2 1 7 7 H 1.09004 * 109.47190 * 300.00195 * 6 3 2 8 8 C 1.52994 * 109.47435 * 179.97438 * 6 3 2 9 9 C 1.50700 * 109.46946 * 59.99760 * 6 3 2 10 10 O 1.21280 * 120.00167 * 0.02562 * 9 6 3 11 11 N 1.34782 * 119.99883 * 180.02562 * 9 6 3 12 12 C 1.46500 * 119.99718 * 180.02562 * 11 9 6 13 13 H 1.08993 * 110.27719 * 327.08906 * 12 11 9 14 14 C 1.54601 * 110.30649 * 89.28294 * 12 11 9 15 15 C 1.54939 * 102.91787 * 140.87143 * 14 12 11 16 16 N 1.48530 * 103.22983 * 322.58476 * 15 14 12 17 17 C 1.46901 * 111.00283 * 159.72553 * 16 15 14 18 18 C 1.50700 * 109.47246 * 52.60092 * 17 16 15 19 19 O 1.21291 * 119.99949 * 359.97438 * 18 17 16 20 20 N 1.34770 * 120.00015 * 180.02562 * 18 17 16 21 21 C 1.37098 * 120.00053 * 180.02562 * 20 18 17 22 22 H 1.07998 * 120.00064 * 359.97438 * 21 20 18 23 23 C 1.38960 * 119.99941 * 179.72530 * 21 20 18 24 24 N 1.31409 * 119.99747 * 0.27271 * 23 21 20 25 25 Si 1.86797 * 119.99944 * 180.27397 * 23 21 20 26 26 H 1.48497 * 109.46958 * 89.99806 * 25 23 21 27 27 H 1.48501 * 109.47168 * 209.99570 * 25 23 21 28 28 H 1.48494 * 109.47040 * 329.99978 * 25 23 21 29 29 C 1.47904 * 105.82142 * 39.20595 * 16 15 14 30 30 H 1.09006 * 109.46939 * 293.28370 * 1 2 3 31 31 H 1.09003 * 109.46962 * 53.28219 * 1 2 3 32 32 H 1.08990 * 109.47389 * 173.28344 * 1 2 3 33 33 H 1.09000 * 109.46632 * 239.99969 * 2 1 3 34 34 H 1.09001 * 109.46904 * 120.00244 * 2 1 3 35 35 H 1.08997 * 109.47503 * 174.75536 * 3 2 1 36 36 H 1.08997 * 109.47495 * 54.99650 * 4 3 2 37 37 H 1.08997 * 109.47508 * 175.00364 * 4 3 2 38 38 H 1.09000 * 109.47495 * 305.49758 * 5 4 3 39 39 H 1.08999 * 109.47274 * 65.50058 * 5 4 3 40 40 H 1.09005 * 109.47093 * 185.50350 * 5 4 3 41 41 H 1.09002 * 109.47050 * 59.99877 * 8 6 3 42 42 H 1.08994 * 109.47549 * 179.97438 * 8 6 3 43 43 H 1.09004 * 109.47263 * 300.00362 * 8 6 3 44 44 H 0.97002 * 119.99836 * 359.97438 * 11 9 6 45 45 H 1.08998 * 110.72065 * 259.22779 * 14 12 11 46 46 H 1.08994 * 110.72394 * 22.33824 * 14 12 11 47 47 H 1.08999 * 110.66711 * 204.14716 * 15 14 12 48 48 H 1.09002 * 110.66695 * 81.02355 * 15 14 12 49 49 H 1.09007 * 109.46473 * 292.60111 * 17 16 15 50 50 H 1.08992 * 109.47456 * 172.60393 * 17 16 15 51 51 H 0.97008 * 120.00100 * 359.97438 * 20 18 17 52 52 H 0.97008 * 119.99628 * 180.02562 * 24 23 21 53 53 H 1.09002 * 109.91442 * 94.02412 * 29 16 15 54 54 H 1.08997 * 109.91616 * 215.11870 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.6405 2.1248 -1.3098 5 6 2.3546 1.4429 -2.4785 6 6 1.4253 2.2008 1.1782 7 1 0.3394 2.1993 1.0844 8 6 1.9358 3.6430 1.1786 9 6 1.8189 1.5287 2.4684 10 8 2.5222 0.5409 2.4476 11 7 1.3893 2.0255 3.6453 12 6 1.7724 1.3725 4.8996 13 1 1.8645 0.2965 4.7524 14 6 3.1019 1.9600 5.4261 15 6 2.8688 2.0278 6.9563 16 7 1.4398 2.4182 7.0654 17 6 0.9002 2.0765 8.3883 18 6 1.7901 2.6544 9.4585 19 8 2.7770 3.2882 9.1495 20 7 1.4899 2.4662 10.7587 21 6 2.2992 2.9924 11.7323 22 1 3.1775 3.5574 11.4572 23 6 1.9865 2.8032 13.0729 24 7 0.9180 2.1152 13.4076 25 14 3.0849 3.5266 14.3993 26 1 2.6156 4.8938 14.7393 27 1 3.0294 2.6688 15.6103 28 1 4.4828 3.5924 13.9028 29 6 0.7361 1.6751 5.9978 30 1 -0.3633 0.4062 0.9440 31 1 -0.3633 0.6144 -0.8238 32 1 -0.3633 -1.0205 -0.1202 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.1260 1.4439 0.0939 36 1 0.5621 2.0451 -1.4468 37 1 1.9254 3.1762 -1.2735 38 1 3.4289 1.4363 -2.2940 39 1 1.9963 0.4180 -2.5752 40 1 2.1476 1.9886 -3.3991 41 1 1.6515 4.1294 0.2454 42 1 1.4976 4.1834 2.0177 43 1 3.0218 3.6441 1.2727 44 1 0.8271 2.8159 3.6619 45 1 3.9356 1.2981 5.1919 46 1 3.2737 2.9547 5.0149 47 1 3.5098 2.7837 7.4100 48 1 3.0375 1.0534 7.4147 49 1 0.8602 0.9924 8.4953 50 1 -0.1037 2.4888 8.4889 51 1 0.7008 1.9590 11.0059 52 1 0.6995 1.9834 14.3435 53 1 0.3348 0.7433 6.3965 54 1 -0.0721 2.2838 5.5924 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316983057.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:59 Heat of formation + Delta-G solvation = -105.518563 kcal Electronic energy + Delta-G solvation = -30159.977155 eV Core-core repulsion = 26130.157930 eV Total energy + Delta-G solvation = -4029.819225 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.49464 -40.61574 -39.22399 -37.92407 -36.05131 -35.33731 -33.46323 -33.22731 -32.11718 -31.85688 -29.51003 -28.09798 -27.17953 -26.06208 -24.87316 -24.18069 -22.56155 -21.91940 -21.31925 -21.05948 -19.87824 -19.82254 -18.18247 -17.66557 -17.43294 -16.84689 -16.48481 -16.36063 -16.28272 -16.14628 -15.64302 -15.53734 -15.24059 -14.96222 -14.65130 -14.53325 -14.06527 -13.80637 -13.73134 -13.64458 -13.43003 -13.34422 -13.15653 -13.05496 -12.99165 -12.71641 -12.64001 -12.59580 -12.47307 -12.41982 -12.28798 -12.17356 -12.13377 -11.87676 -11.80857 -11.46993 -11.39906 -11.26143 -11.04710 -10.43633 -10.28252 -10.02612 -9.89884 -9.36812 -8.47214 -5.95618 1.37426 1.41526 1.53919 1.70592 2.03733 2.19736 2.29037 2.84263 3.19916 3.29549 3.55039 3.70934 3.79604 3.79911 3.94296 4.11002 4.17732 4.26657 4.29515 4.39332 4.41553 4.43508 4.45145 4.48469 4.54592 4.55468 4.62076 4.68335 4.70726 4.79510 4.85285 4.90544 4.94276 5.01101 5.07352 5.08336 5.13812 5.18018 5.23932 5.26870 5.35066 5.39583 5.41187 5.46548 5.51231 5.61590 5.74560 5.82177 5.91132 6.08145 6.60034 6.62595 7.12570 7.34092 7.55139 8.11076 8.70097 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.036516 B = 0.001755 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.612857 B =15948.136167 C =16213.471579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.132 4.132 3 C -0.063 4.063 4 C -0.120 4.120 5 C -0.154 4.154 6 C -0.102 4.102 7 H 0.119 0.881 8 C -0.146 4.146 9 C 0.514 3.486 10 O -0.574 6.574 11 N -0.709 5.709 12 C 0.145 3.855 13 H 0.085 0.915 14 C -0.123 4.123 15 C 0.041 3.959 16 N -0.505 5.505 17 C 0.047 3.953 18 C 0.438 3.562 19 O -0.614 6.614 20 N -0.572 5.572 21 C -0.333 4.333 22 H 0.079 0.921 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.992 3.008 26 H -0.271 1.271 27 H -0.271 1.271 28 H -0.274 1.274 29 C 0.032 3.968 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.045 0.955 39 H 0.053 0.947 40 H 0.062 0.938 41 H 0.089 0.911 42 H 0.070 0.930 43 H 0.046 0.954 44 H 0.414 0.586 45 H 0.068 0.932 46 H 0.076 0.924 47 H 0.081 0.919 48 H 0.028 0.972 49 H 0.069 0.931 50 H 0.115 0.885 51 H 0.396 0.604 52 H 0.277 0.723 53 H 0.065 0.935 54 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.751 -1.280 -28.703 29.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.169 4.169 3 C -0.082 4.082 4 C -0.157 4.157 5 C -0.211 4.211 6 C -0.123 4.123 7 H 0.137 0.863 8 C -0.204 4.204 9 C 0.303 3.697 10 O -0.453 6.453 11 N -0.362 5.362 12 C 0.039 3.961 13 H 0.103 0.897 14 C -0.163 4.163 15 C -0.087 4.087 16 N -0.230 5.230 17 C -0.085 4.085 18 C 0.226 3.774 19 O -0.500 6.500 20 N -0.209 5.209 21 C -0.462 4.462 22 H 0.097 0.903 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.816 3.184 26 H -0.196 1.196 27 H -0.196 1.196 28 H -0.199 1.199 29 C -0.096 4.096 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.108 0.892 42 H 0.089 0.911 43 H 0.065 0.935 44 H 0.251 0.749 45 H 0.086 0.914 46 H 0.094 0.906 47 H 0.100 0.900 48 H 0.046 0.954 49 H 0.087 0.913 50 H 0.133 0.867 51 H 0.230 0.770 52 H 0.087 0.913 53 H 0.084 0.916 54 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.769 -1.057 -28.776 29.188 hybrid contribution 0.226 -0.729 1.524 1.705 sum -4.543 -1.786 -27.252 27.686 Atomic orbital electron populations 1.21846 0.95339 1.01683 1.01829 1.21735 0.96490 0.96677 1.02034 1.20931 0.99184 0.94547 0.93521 1.21688 1.01303 0.99859 0.92822 1.21805 1.00153 1.00853 0.98268 1.21462 1.03562 0.96565 0.90678 0.86300 1.21881 1.01117 0.93094 1.04265 1.21250 0.78798 0.83556 0.86128 1.90632 1.39035 1.27866 1.87811 1.46058 1.53295 1.32157 1.04666 1.21590 0.93445 0.97443 0.83615 0.89726 1.22849 0.97648 1.01630 0.94141 1.23244 0.90774 0.98973 0.95665 1.64622 1.02996 1.53699 1.01683 1.22026 0.98917 0.99389 0.88134 1.20722 0.87974 0.84848 0.83884 1.90442 1.31402 1.46199 1.82000 1.41915 1.25788 1.48689 1.04520 1.19662 1.07653 1.32374 0.86554 0.90260 1.26025 0.98297 0.97167 0.99731 1.69672 1.26369 1.40415 1.19585 0.84934 0.78059 0.78248 0.77139 1.19609 1.19607 1.19873 1.23251 0.96789 0.98235 0.91306 0.93279 0.91026 0.93276 0.92137 0.92335 0.92918 0.90522 0.90683 0.93561 0.92826 0.91901 0.89195 0.91091 0.93471 0.74854 0.91375 0.90565 0.90041 0.95399 0.91303 0.86714 0.77003 0.91316 0.91631 0.87428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.08 71.98 0.65 -1.33 16 2 C -0.13 -2.25 5.18 30.59 0.16 -2.09 16 3 C -0.06 -0.93 1.39 -10.79 -0.02 -0.94 16 4 C -0.12 -1.19 5.06 30.59 0.15 -1.04 16 5 C -0.15 -1.62 9.53 71.98 0.69 -0.93 16 6 C -0.10 -1.34 1.83 -11.54 -0.02 -1.36 16 7 H 0.12 1.12 6.50 -2.38 -0.02 1.10 16 8 C -0.15 -1.53 8.74 71.98 0.63 -0.91 16 9 C 0.51 10.36 6.86 87.66 0.60 10.97 16 10 O -0.57 -16.28 13.33 -3.03 -0.04 -16.32 16 11 N -0.71 -12.64 4.95 -438.36 -2.17 -14.81 16 12 C 0.15 3.29 3.34 45.87 0.15 3.44 16 13 H 0.08 2.13 7.56 -2.39 -0.02 2.11 16 14 C -0.12 -3.39 6.78 31.80 0.22 -3.17 16 15 C 0.04 1.42 5.30 86.65 0.46 1.88 16 16 N -0.51 -15.78 5.26 -887.56 -4.67 -20.45 16 17 C 0.05 1.58 5.52 85.56 0.47 2.05 16 18 C 0.44 20.58 7.49 87.66 0.66 21.23 16 19 O -0.61 -33.14 13.09 -3.07 -0.04 -33.18 16 20 N -0.57 -29.12 5.29 -306.99 -1.62 -30.75 16 21 C -0.33 -18.81 9.68 84.04 0.81 -18.00 16 22 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 23 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 24 N -0.92 -49.39 13.05 21.67 0.28 -49.11 16 25 Si 0.99 42.89 29.55 68.60 2.03 44.91 16 26 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 27 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 28 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 29 C 0.03 0.71 6.46 86.45 0.56 1.27 16 30 H 0.05 0.66 6.75 -2.38 -0.02 0.64 16 31 H 0.07 0.70 6.20 -2.39 -0.01 0.69 16 32 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.06 0.98 6.45 -2.39 -0.02 0.97 16 34 H 0.06 1.39 5.65 -2.39 -0.01 1.38 16 35 H 0.05 1.02 8.10 -2.39 -0.02 1.00 16 36 H 0.08 0.61 6.23 -2.39 -0.01 0.60 16 37 H 0.07 0.62 6.17 -2.39 -0.01 0.60 16 38 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.05 0.59 6.72 -2.39 -0.02 0.58 16 40 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 41 H 0.09 0.62 6.32 -2.39 -0.02 0.60 16 42 H 0.07 0.63 7.56 -2.39 -0.02 0.61 16 43 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 44 H 0.41 5.25 7.78 -92.71 -0.72 4.53 16 45 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.08 2.08 8.06 -2.39 -0.02 2.06 16 47 H 0.08 3.46 5.97 -2.39 -0.01 3.45 16 48 H 0.03 0.99 8.02 -2.39 -0.02 0.97 16 49 H 0.07 2.09 7.81 -2.38 -0.02 2.08 16 50 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 51 H 0.40 19.15 7.90 -92.70 -0.73 18.42 16 52 H 0.28 13.96 8.31 -92.70 -0.77 13.19 16 53 H 0.07 1.33 7.57 -2.39 -0.02 1.31 16 54 H 0.11 1.86 7.66 -2.39 -0.02 1.84 16 Total: -1.00 -69.94 408.89 -0.13 -70.06 By element: Atomic # 1 Polarization: 39.31 SS G_CDS: -0.54 Total: 38.77 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 6.64 Total: 10.88 kcal Atomic # 7 Polarization: -106.94 SS G_CDS: -8.18 Total: -115.11 kcal Atomic # 8 Polarization: -49.43 SS G_CDS: -0.08 Total: -49.51 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -69.94 -0.13 -70.06 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316983057.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.457 kcal (2) G-P(sol) polarization free energy of solvation -69.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds