Wall clock time and date at job start Sat Apr 11 2020 05:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47418 * 2 1 4 4 C 1.52994 * 109.47165 * 299.91969 * 3 2 1 5 5 C 1.53006 * 109.47016 * 294.73959 * 4 3 2 6 6 C 1.53013 * 109.46912 * 59.91198 * 3 2 1 7 7 H 1.08996 * 109.47129 * 300.00551 * 6 3 2 8 8 C 1.52999 * 109.46728 * 60.00101 * 6 3 2 9 9 C 1.50696 * 109.46894 * 180.02562 * 6 3 2 10 10 O 1.21285 * 120.00202 * 359.97438 * 9 6 3 11 11 N 1.34779 * 120.00197 * 180.02562 * 9 6 3 12 12 C 1.46490 * 120.00364 * 179.97438 * 11 9 6 13 13 H 1.08999 * 110.87461 * 37.39533 * 12 11 9 14 14 C 1.55135 * 110.99383 * 273.54536 * 12 11 9 15 15 C 1.54319 * 103.02236 * 206.25425 * 14 12 11 16 16 N 1.47443 * 107.23222 * 22.28430 * 15 14 12 17 17 C 1.46899 * 111.00054 * 123.25701 * 16 15 14 18 18 C 1.50698 * 109.47009 * 69.87388 * 17 16 15 19 19 O 1.21290 * 120.00109 * 0.02562 * 18 17 16 20 20 N 1.34782 * 119.99897 * 179.72295 * 18 17 16 21 21 C 1.37093 * 119.99932 * 180.27224 * 20 18 17 22 22 H 1.07996 * 120.00053 * 0.02562 * 21 20 18 23 23 C 1.38951 * 120.00163 * 180.02562 * 21 20 18 24 24 N 1.31420 * 119.99697 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00409 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.46916 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47333 * 120.00203 * 25 23 21 28 28 H 1.48498 * 109.47180 * 240.00336 * 25 23 21 29 29 C 1.47849 * 108.56660 * 0.99185 * 16 15 14 30 30 H 1.09005 * 109.47262 * 301.86620 * 1 2 3 31 31 H 1.08999 * 109.47268 * 61.86165 * 1 2 3 32 32 H 1.08998 * 109.47566 * 181.86913 * 1 2 3 33 33 H 1.08998 * 109.47354 * 239.99863 * 2 1 3 34 34 H 1.09007 * 109.47133 * 119.99755 * 2 1 3 35 35 H 1.08996 * 109.47673 * 179.91416 * 3 2 1 36 36 H 1.08996 * 109.47817 * 54.73511 * 4 3 2 37 37 H 1.09004 * 109.47660 * 174.74207 * 4 3 2 38 38 H 1.08998 * 109.47059 * 177.75165 * 5 4 3 39 39 H 1.09006 * 109.46637 * 297.75480 * 5 4 3 40 40 H 1.09001 * 109.46897 * 57.74831 * 5 4 3 41 41 H 1.08993 * 109.47560 * 299.99870 * 8 6 3 42 42 H 1.09010 * 109.46894 * 60.00224 * 8 6 3 43 43 H 1.08998 * 109.46851 * 179.97438 * 8 6 3 44 44 H 0.97003 * 119.99239 * 0.02562 * 11 9 6 45 45 H 1.09004 * 110.70374 * 87.87120 * 14 12 11 46 46 H 1.09004 * 110.70767 * 324.63735 * 14 12 11 47 47 H 1.08997 * 109.89154 * 262.87583 * 15 14 12 48 48 H 1.08998 * 109.88896 * 141.68857 * 15 14 12 49 49 H 1.09001 * 109.47052 * 309.87110 * 17 16 15 50 50 H 1.09001 * 109.47064 * 189.87805 * 17 16 15 51 51 H 0.97005 * 119.99582 * 0.27845 * 20 18 17 52 52 H 0.96994 * 119.99984 * 179.97438 * 24 23 21 53 53 H 1.08994 * 110.37587 * 94.73329 * 29 16 15 54 54 H 1.08996 * 110.37251 * 217.08011 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5317 2.1631 -1.2502 5 6 2.1485 1.5216 -2.4949 6 6 1.5282 2.1644 1.2483 7 1 0.4382 2.1644 1.2467 8 6 2.0364 1.4437 2.4985 9 6 2.0301 3.5853 1.2479 10 8 2.7287 3.9815 0.3392 11 7 1.7034 4.4157 2.2581 12 6 2.1917 5.7968 2.2581 13 1 2.1987 6.2063 1.2479 14 6 3.5988 5.8888 2.9048 15 6 3.6463 7.3394 3.4292 16 7 2.2522 7.7921 3.5887 17 6 1.9961 8.2325 4.9665 18 6 2.7361 9.5189 5.2284 19 8 3.4101 10.0198 4.3532 20 7 2.6441 10.1160 6.4332 21 6 3.3128 11.2892 6.6697 22 1 3.9129 11.7352 5.8904 23 6 3.2183 11.9046 7.9119 24 7 2.4884 11.3616 8.8603 25 14 4.1288 13.5035 8.2339 26 1 4.8736 13.9035 7.0130 27 1 3.1536 14.5657 8.5886 28 1 5.0828 13.3126 9.3558 29 6 1.3509 6.6826 3.2110 30 1 -0.3634 0.5426 0.8728 31 1 -0.3634 0.4846 -0.9062 32 1 -0.3634 -1.0271 0.0335 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.1300 1.4425 0.0015 36 1 0.4459 2.0823 -1.3001 37 1 1.8161 3.2144 -1.2046 38 1 1.7558 2.0089 -3.3872 39 1 3.2319 1.6377 -2.4644 40 1 1.8973 0.4613 -2.5194 41 1 1.6731 0.4161 2.4985 42 1 3.1265 1.4437 2.5000 43 1 1.6722 1.9582 3.3877 44 1 1.1455 4.0984 2.9854 45 1 4.3770 5.7226 2.1598 46 1 3.6925 5.1787 3.7265 47 1 4.1632 7.9764 2.7115 48 1 4.1583 7.3695 4.3909 49 1 2.3401 7.4673 5.6624 50 1 0.9269 8.3939 5.1036 51 1 2.1047 9.7155 7.1330 52 1 2.4228 11.7909 9.7276 53 1 1.0557 6.1161 4.0941 54 1 0.4716 7.0672 2.6943 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316983059.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:10 Heat of formation + Delta-G solvation = -109.317150 kcal Electronic energy + Delta-G solvation = -30030.262252 eV Core-core repulsion = 26000.278308 eV Total energy + Delta-G solvation = -4029.983944 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 7.05 seconds Orbital eigenvalues (eV) -41.48182 -40.54547 -39.28533 -38.01305 -36.00688 -35.43163 -33.51883 -33.23522 -32.05042 -31.58828 -29.62957 -28.07876 -27.37720 -26.08314 -25.25364 -23.72929 -22.43908 -22.17384 -21.39422 -20.78246 -19.84410 -19.77633 -18.41645 -17.72596 -17.56496 -16.92006 -16.51635 -16.37033 -16.24895 -16.06024 -15.66865 -15.54490 -14.90855 -14.79388 -14.62597 -14.42490 -14.22530 -13.90124 -13.78949 -13.69729 -13.56681 -13.46209 -13.29311 -13.16390 -12.95732 -12.76408 -12.66242 -12.50998 -12.44739 -12.40848 -12.34330 -12.13104 -12.11780 -11.81629 -11.76777 -11.49794 -11.40577 -11.20088 -11.04888 -10.49091 -10.32331 -10.03443 -9.99457 -9.24400 -8.46301 -5.94416 1.36276 1.41529 1.55463 1.68268 2.05956 2.07491 2.30358 2.88875 3.20631 3.32113 3.52562 3.65237 3.75634 3.82017 3.92477 4.02524 4.17809 4.26052 4.27772 4.33389 4.39864 4.41921 4.44487 4.46917 4.52779 4.55171 4.62123 4.64057 4.72110 4.82567 4.85954 4.93449 4.94895 4.99413 5.02713 5.07616 5.11679 5.16687 5.17973 5.30475 5.34343 5.40064 5.41873 5.43475 5.52571 5.57024 5.75225 5.85196 5.99309 6.10606 6.59524 6.62293 7.14490 7.32653 7.57988 8.14680 8.71342 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.033658 B = 0.001739 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.704493 B =16093.543073 C =16487.167367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.118 4.118 3 C -0.063 4.063 4 C -0.134 4.134 5 C -0.147 4.147 6 C -0.101 4.101 7 H 0.119 0.881 8 C -0.144 4.144 9 C 0.513 3.487 10 O -0.572 6.572 11 N -0.708 5.708 12 C 0.147 3.853 13 H 0.080 0.920 14 C -0.139 4.139 15 C 0.062 3.938 16 N -0.528 5.528 17 C 0.056 3.944 18 C 0.439 3.561 19 O -0.618 6.618 20 N -0.575 5.575 21 C -0.331 4.331 22 H 0.076 0.924 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.991 3.009 26 H -0.276 1.276 27 H -0.270 1.270 28 H -0.270 1.270 29 C 0.045 3.955 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.049 0.951 39 H 0.040 0.960 40 H 0.065 0.935 41 H 0.088 0.912 42 H 0.047 0.953 43 H 0.074 0.926 44 H 0.416 0.584 45 H 0.067 0.933 46 H 0.084 0.916 47 H 0.053 0.947 48 H 0.042 0.958 49 H 0.075 0.925 50 H 0.115 0.885 51 H 0.397 0.603 52 H 0.277 0.723 53 H 0.081 0.919 54 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.110 -27.437 -11.526 30.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.155 4.155 3 C -0.082 4.082 4 C -0.171 4.171 5 C -0.204 4.204 6 C -0.122 4.122 7 H 0.137 0.863 8 C -0.202 4.202 9 C 0.301 3.699 10 O -0.451 6.451 11 N -0.360 5.360 12 C 0.041 3.959 13 H 0.098 0.902 14 C -0.179 4.179 15 C -0.066 4.066 16 N -0.253 5.253 17 C -0.076 4.076 18 C 0.226 3.774 19 O -0.504 6.504 20 N -0.213 5.213 21 C -0.461 4.461 22 H 0.094 0.906 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.815 3.185 26 H -0.201 1.201 27 H -0.196 1.196 28 H -0.196 1.196 29 C -0.083 4.083 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.084 0.916 41 H 0.107 0.893 42 H 0.067 0.933 43 H 0.093 0.907 44 H 0.253 0.747 45 H 0.086 0.914 46 H 0.102 0.898 47 H 0.071 0.929 48 H 0.060 0.940 49 H 0.092 0.908 50 H 0.133 0.867 51 H 0.231 0.769 52 H 0.087 0.913 53 H 0.099 0.901 54 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.306 -26.326 -12.872 30.202 hybrid contribution 0.478 0.416 1.335 1.478 sum -6.829 -25.911 -11.537 29.173 Atomic orbital electron populations 1.21902 0.95231 1.02048 1.02227 1.21612 0.96695 0.94614 1.02594 1.20923 0.99473 0.95116 0.92734 1.21825 1.00286 1.00549 0.94471 1.21745 1.00127 1.01112 0.97432 1.21455 1.03201 0.89377 0.98150 0.86282 1.21859 1.01214 1.01938 0.95145 1.21325 0.79269 0.88606 0.80663 1.90660 1.39278 1.78181 1.37008 1.45820 1.53604 1.10708 1.25892 1.21757 0.92591 0.82041 0.99554 0.90206 1.23086 0.98216 0.95900 1.00690 1.22519 0.89836 0.94261 0.99996 1.63102 1.04063 1.35571 1.22536 1.21945 1.01565 0.93968 0.90077 1.20865 0.85505 0.88488 0.82504 1.90503 1.46008 1.68028 1.45833 1.41919 1.44767 1.22203 1.12400 1.19666 1.27159 1.00629 0.98657 0.90590 1.25996 0.98034 1.02548 0.94645 1.69670 1.40254 1.41369 1.04799 0.84897 0.78057 0.77449 0.78084 1.20058 1.19556 1.19566 1.23279 0.95871 0.90429 0.98690 0.91722 0.92843 0.92218 0.91702 0.90733 0.92798 0.91489 0.92263 0.93180 0.94071 0.91574 0.89331 0.93341 0.90745 0.74666 0.91422 0.89752 0.92872 0.93976 0.90759 0.86716 0.76943 0.91330 0.90132 0.88613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 9.21 71.98 0.66 -0.51 16 2 C -0.12 -1.09 5.12 30.59 0.16 -0.93 16 3 C -0.06 -0.89 1.39 -10.79 -0.01 -0.90 16 4 C -0.13 -2.27 4.93 30.59 0.15 -2.12 16 5 C -0.15 -2.30 9.72 71.98 0.70 -1.60 16 6 C -0.10 -1.18 1.96 -11.54 -0.02 -1.21 16 7 H 0.12 0.95 6.39 -2.39 -0.02 0.94 16 8 C -0.14 -1.17 8.74 71.98 0.63 -0.54 16 9 C 0.51 9.74 6.83 87.66 0.60 10.34 16 10 O -0.57 -16.11 13.42 -3.04 -0.04 -16.15 16 11 N -0.71 -11.09 5.12 -436.01 -2.23 -13.32 16 12 C 0.15 3.23 3.31 46.38 0.15 3.38 16 13 H 0.08 2.19 7.73 -2.39 -0.02 2.17 16 14 C -0.14 -3.47 6.64 31.77 0.21 -3.26 16 15 C 0.06 2.04 5.65 86.65 0.49 2.53 16 16 N -0.53 -16.90 4.85 -890.10 -4.32 -21.22 16 17 C 0.06 1.86 5.03 85.56 0.43 2.29 16 18 C 0.44 21.00 7.43 87.66 0.65 21.65 16 19 O -0.62 -34.94 15.12 -3.06 -0.05 -34.99 16 20 N -0.57 -29.49 5.29 -306.99 -1.62 -31.11 16 21 C -0.33 -18.97 9.68 84.04 0.81 -18.16 16 22 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 23 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 24 N -0.92 -49.40 13.05 21.66 0.28 -49.12 16 25 Si 0.99 43.27 29.55 68.60 2.03 45.30 16 26 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 27 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 28 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 29 C 0.04 0.96 6.31 86.77 0.55 1.50 16 30 H 0.06 0.38 6.33 -2.38 -0.02 0.36 16 31 H 0.05 0.47 6.42 -2.39 -0.02 0.45 16 32 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.06 0.63 6.52 -2.39 -0.02 0.62 16 34 H 0.07 0.55 6.43 -2.38 -0.02 0.53 16 35 H 0.05 0.99 8.10 -2.39 -0.02 0.97 16 36 H 0.07 0.97 6.20 -2.39 -0.01 0.95 16 37 H 0.06 1.40 5.41 -2.38 -0.01 1.39 16 38 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 40 H 0.07 0.82 6.47 -2.39 -0.02 0.81 16 41 H 0.09 0.45 6.43 -2.39 -0.02 0.44 16 42 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 43 H 0.07 0.40 7.56 -2.39 -0.02 0.38 16 44 H 0.42 3.70 7.93 -92.71 -0.74 2.97 16 45 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 48 H 0.04 1.48 7.31 -2.39 -0.02 1.47 16 49 H 0.07 2.14 7.96 -2.39 -0.02 2.12 16 50 H 0.11 3.26 8.07 -2.39 -0.02 3.24 16 51 H 0.40 19.09 7.90 -92.70 -0.73 18.36 16 52 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 53 H 0.08 1.25 7.67 -2.39 -0.02 1.24 16 54 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -74.10 412.60 0.11 -73.99 By element: Atomic # 1 Polarization: 34.92 SS G_CDS: -0.56 Total: 34.36 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 6.62 Total: 12.26 kcal Atomic # 7 Polarization: -106.88 SS G_CDS: -7.89 Total: -114.77 kcal Atomic # 8 Polarization: -51.05 SS G_CDS: -0.09 Total: -51.14 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -74.10 0.11 -73.99 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316983059.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.327 kcal (2) G-P(sol) polarization free energy of solvation -74.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.06 seconds