Wall clock time and date at job start Sat Apr 11 2020 05:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46695 * 2 1 4 4 C 1.52992 * 109.47279 * 120.00234 * 2 1 3 5 5 C 1.52997 * 109.47482 * 65.00040 * 4 2 1 6 6 C 1.50701 * 109.47212 * 179.97438 * 5 4 2 7 7 O 1.21280 * 119.99781 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99795 * 179.97438 * 6 5 4 9 9 C 1.46920 * 120.63110 * 0.02562 * 8 6 5 10 10 C 1.53195 * 108.77715 * 233.58100 * 9 8 6 11 11 C 1.53040 * 109.31233 * 305.37008 * 10 9 8 12 12 C 1.53040 * 109.54077 * 61.36216 * 11 10 9 13 13 H 1.08993 * 109.49843 * 58.61494 * 12 11 10 14 14 C 1.50695 * 109.49816 * 178.68469 * 12 11 10 15 15 O 1.21280 * 119.99963 * 120.00229 * 14 12 11 16 16 N 1.34776 * 120.00065 * 299.99916 * 14 12 11 17 17 C 1.46498 * 119.99910 * 180.02562 * 16 14 12 18 18 C 1.53002 * 109.46791 * 180.02562 * 17 16 14 19 19 N 1.46507 * 109.46916 * 179.97438 * 18 17 16 20 20 C 1.36932 * 119.99753 * 179.97438 * 19 18 17 21 21 H 1.08003 * 120.00653 * 0.02562 * 20 19 18 22 22 C 1.38813 * 119.99802 * 179.97438 * 20 19 18 23 23 N 1.31623 * 120.00054 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 120.00104 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47427 * 89.99862 * 24 22 20 26 26 H 1.48507 * 109.46721 * 210.00077 * 24 22 20 27 27 H 1.48498 * 109.46721 * 329.99584 * 24 22 20 28 28 C 1.46928 * 120.62698 * 179.72199 * 8 6 5 29 29 H 1.09001 * 109.46924 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47104 * 299.99452 * 1 2 3 31 31 H 1.08993 * 109.47832 * 59.99829 * 1 2 3 32 32 H 1.09001 * 109.46580 * 240.00538 * 2 1 3 33 33 H 1.09007 * 109.46964 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47224 * 300.00155 * 3 2 1 35 35 H 1.09000 * 109.47346 * 60.00132 * 3 2 1 36 36 H 1.09002 * 109.47103 * 304.99792 * 4 2 1 37 37 H 1.08998 * 109.46862 * 185.00605 * 4 2 1 38 38 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 39 39 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 40 40 H 1.09002 * 109.58578 * 353.37442 * 9 8 6 41 41 H 1.09006 * 109.58415 * 113.65500 * 9 8 6 42 42 H 1.09001 * 109.49283 * 65.31632 * 10 9 8 43 43 H 1.08994 * 109.49604 * 185.38351 * 10 9 8 44 44 H 1.09004 * 109.45891 * 181.38330 * 11 10 9 45 45 H 1.09005 * 109.45967 * 301.34340 * 11 10 9 46 46 H 0.97001 * 119.99610 * 0.02562 * 16 14 12 47 47 H 1.09002 * 109.47057 * 299.99212 * 17 16 14 48 48 H 1.09000 * 109.47877 * 59.99989 * 17 16 14 49 49 H 1.09001 * 109.47181 * 299.99501 * 18 17 16 50 50 H 1.08995 * 109.47801 * 59.99527 * 18 17 16 51 51 H 0.96990 * 119.99845 * 0.02562 * 19 18 17 52 52 H 0.97000 * 120.00177 * 180.02562 * 23 22 20 53 53 H 1.09005 * 109.58457 * 246.20343 * 28 8 6 54 54 H 1.09001 * 109.58558 * 6.62966 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6353 -2.1955 1.1879 6 6 2.1383 -2.9060 2.4180 7 8 2.7589 -2.2934 3.2610 8 7 1.8975 -4.2220 2.5819 9 6 1.1467 -4.9773 1.5698 10 6 -0.0206 -5.6946 2.2552 11 6 0.5158 -6.5480 3.4068 12 6 1.2003 -5.6462 4.4366 13 1 0.4870 -4.9096 4.8062 14 6 1.6996 -6.4837 5.5856 15 8 2.8824 -6.5030 5.8528 16 7 0.8317 -7.2112 6.3163 17 6 1.3171 -8.0249 7.4336 18 6 0.1376 -8.7452 8.0900 19 7 0.6231 -9.5595 9.2071 20 6 -0.2587 -10.2987 9.9494 21 1 -1.3121 -10.2819 9.7112 22 6 0.2013 -11.0706 11.0074 23 7 -0.6462 -11.7816 11.7206 24 14 2.0231 -11.1003 11.4190 25 1 2.3274 -10.0245 12.3963 26 1 2.3763 -12.4176 12.0069 27 1 2.8138 -10.8828 10.1810 28 6 2.3866 -4.9298 3.7729 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8932 -0.5138 -0.8901 33 1 3.1300 1.4426 -0.0005 34 1 1.6765 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6054 -0.2618 2.1369 37 1 3.1263 -0.6442 1.2950 38 1 2.0699 -2.6550 0.3001 39 1 0.5490 -2.2724 1.1420 40 1 0.7619 -4.2927 0.8139 41 1 1.8028 -5.7097 1.0993 42 1 -0.7222 -4.9571 2.6451 43 1 -0.5286 -6.3343 1.5336 44 1 -0.3100 -7.0787 3.8807 45 1 1.2360 -7.2689 3.0197 46 1 -0.1143 -7.1960 6.1023 47 1 2.0314 -8.7606 7.0639 48 1 1.8042 -7.3820 8.1668 49 1 -0.5771 -8.0099 8.4597 50 1 -0.3492 -9.3883 7.3568 51 1 1.5689 -9.5743 9.4212 52 1 -0.3248 -12.3207 12.4602 53 1 3.1409 -5.6601 3.4799 54 1 2.8201 -4.2138 4.4712 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317291475.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:54 Heat of formation + Delta-G solvation = -112.765712 kcal Electronic energy + Delta-G solvation = -29347.567852 eV Core-core repulsion = 25317.434367 eV Total energy + Delta-G solvation = -4030.133485 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -41.66751 -40.66236 -38.39942 -37.46214 -37.35141 -35.60293 -34.27874 -33.38177 -32.52445 -31.59255 -29.81414 -27.96540 -26.90395 -25.99926 -25.05453 -24.11117 -23.11857 -22.47744 -21.12299 -20.78043 -19.90600 -19.84421 -18.43753 -17.81388 -17.24356 -16.89158 -16.74932 -16.67788 -16.36115 -15.77897 -15.72521 -15.62905 -15.30315 -15.06023 -14.98265 -14.68791 -14.48778 -14.43860 -14.21351 -13.89064 -13.61504 -13.47100 -13.42890 -13.20212 -13.04011 -12.74038 -12.68881 -12.63163 -12.52093 -12.21272 -12.10145 -12.07021 -11.95134 -11.83987 -11.65400 -11.62893 -11.47884 -11.42050 -11.04965 -10.96917 -10.75787 -10.19765 -9.70993 -9.37480 -8.06338 -5.41517 1.38150 1.39605 1.46631 1.52607 1.59145 1.78634 2.22083 2.45511 3.25730 3.41486 3.54094 3.69460 3.78724 3.80106 3.87780 3.95171 4.00161 4.07296 4.13857 4.17426 4.19090 4.22894 4.36236 4.49036 4.53206 4.55872 4.63311 4.68094 4.76911 4.81916 4.83329 4.87824 4.91721 4.97080 4.98735 5.07249 5.07933 5.11016 5.12817 5.16841 5.21651 5.32166 5.34671 5.38274 5.47864 5.51598 5.57145 5.71426 6.16596 6.39199 6.46827 7.02084 7.13679 7.17698 7.76851 7.94044 9.14342 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.027800 B = 0.001627 C = 0.001598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.967443 B =17200.330736 C =17518.834397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.092 4.092 3 C -0.151 4.151 4 C -0.099 4.099 5 C -0.130 4.130 6 C 0.504 3.496 7 O -0.594 6.594 8 N -0.611 5.611 9 C 0.095 3.905 10 C -0.127 4.127 11 C -0.112 4.112 12 C -0.106 4.106 13 H 0.113 0.887 14 C 0.517 3.483 15 O -0.586 6.586 16 N -0.708 5.708 17 C 0.121 3.879 18 C 0.151 3.849 19 N -0.759 5.759 20 C -0.238 4.238 21 H 0.065 0.935 22 C -0.057 4.057 23 N -0.979 5.979 24 Si 0.950 3.050 25 H -0.279 1.279 26 H -0.293 1.293 27 H -0.255 1.255 28 C 0.134 3.866 29 H 0.070 0.930 30 H 0.046 0.954 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.049 0.951 34 H 0.064 0.936 35 H 0.047 0.953 36 H 0.049 0.951 37 H 0.049 0.951 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.118 0.882 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.110 0.890 44 H 0.090 0.910 45 H 0.068 0.932 46 H 0.418 0.582 47 H 0.061 0.939 48 H 0.057 0.943 49 H 0.041 0.959 50 H 0.044 0.956 51 H 0.366 0.634 52 H 0.259 0.741 53 H 0.067 0.933 54 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.364 22.245 -34.140 40.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.110 4.110 3 C -0.209 4.209 4 C -0.137 4.137 5 C -0.169 4.169 6 C 0.295 3.705 7 O -0.475 6.475 8 N -0.343 5.343 9 C -0.026 4.026 10 C -0.165 4.165 11 C -0.150 4.150 12 C -0.128 4.128 13 H 0.131 0.869 14 C 0.304 3.696 15 O -0.466 6.466 16 N -0.360 5.360 17 C -0.004 4.004 18 C 0.024 3.976 19 N -0.406 5.406 20 C -0.369 4.369 21 H 0.083 0.917 22 C -0.249 4.249 23 N -0.629 5.629 24 Si 0.778 3.222 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.179 1.179 28 C 0.010 3.990 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.137 0.863 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.128 0.872 44 H 0.108 0.892 45 H 0.087 0.913 46 H 0.255 0.745 47 H 0.079 0.921 48 H 0.075 0.925 49 H 0.059 0.941 50 H 0.062 0.938 51 H 0.199 0.801 52 H 0.068 0.932 53 H 0.085 0.915 54 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.568 22.465 -33.474 40.317 hybrid contribution 0.870 -0.417 1.339 1.651 sum 1.438 22.048 -32.134 38.997 Atomic orbital electron populations 1.21923 0.94389 1.02670 1.01779 1.21111 0.96522 0.95940 0.97460 1.21863 1.00823 0.96305 1.01859 1.21376 1.00491 0.93577 0.98249 1.21827 1.04341 0.95676 0.95039 1.21620 0.78577 0.81488 0.88860 1.90702 1.43214 1.66695 1.46862 1.48283 1.55436 1.08660 1.21946 1.22189 0.93511 0.96735 0.90162 1.21930 0.97328 0.99577 0.97633 1.21615 1.00635 0.97227 0.95501 1.21685 0.99214 0.98163 0.93785 0.86926 1.21028 0.85666 0.79435 0.83499 1.90714 1.18608 1.66102 1.71172 1.45707 1.11985 1.46561 1.31764 1.21234 0.96758 0.93889 0.88473 1.20835 0.94502 0.93139 0.89093 1.42563 1.06210 1.55454 1.36353 1.19016 0.91005 1.18874 1.07997 0.91698 1.25448 1.01910 0.99305 0.98270 1.69862 1.35424 1.34508 1.23090 0.85482 0.81093 0.76976 0.78683 1.20565 1.21944 1.17940 1.21163 0.94732 0.95554 0.87505 0.91102 0.93528 0.92053 0.89811 0.93158 0.91716 0.93432 0.93258 0.93251 0.86234 0.85950 0.86348 0.90130 0.90442 0.87203 0.89194 0.91290 0.74480 0.92090 0.92496 0.94128 0.93766 0.80122 0.93190 0.91501 0.91957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 8.95 71.98 0.64 -0.24 16 2 C -0.09 -0.72 2.92 -10.80 -0.03 -0.75 16 3 C -0.15 -1.41 9.19 71.98 0.66 -0.74 16 4 C -0.10 -1.25 3.97 30.59 0.12 -1.12 16 5 C -0.13 -1.15 3.80 29.85 0.11 -1.03 16 6 C 0.50 9.35 7.70 87.66 0.67 10.02 16 7 O -0.59 -17.61 15.39 -3.03 -0.05 -17.65 16 8 N -0.61 -9.17 2.97 -817.97 -2.43 -11.60 16 9 C 0.10 0.52 6.34 86.36 0.55 1.07 16 10 C -0.13 -0.53 6.08 30.67 0.19 -0.35 16 11 C -0.11 -1.09 5.07 30.62 0.16 -0.94 16 12 C -0.11 -1.81 2.69 -11.30 -0.03 -1.84 16 13 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 14 C 0.52 13.08 7.16 87.66 0.63 13.70 16 15 O -0.59 -20.58 15.93 -3.03 -0.05 -20.63 16 16 N -0.71 -16.29 5.44 -463.06 -2.52 -18.81 16 17 C 0.12 3.69 5.79 86.38 0.50 4.19 16 18 C 0.15 5.27 6.37 86.38 0.55 5.82 16 19 N -0.76 -35.02 5.41 -343.44 -1.86 -36.88 16 20 C -0.24 -13.40 10.47 84.03 0.88 -12.52 16 21 H 0.07 3.92 8.06 -2.91 -0.02 3.90 16 22 C -0.06 -3.35 5.50 84.86 0.47 -2.89 16 23 N -0.98 -62.15 13.97 21.65 0.30 -61.84 16 24 Si 0.95 45.74 27.74 68.60 1.90 47.64 16 25 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 26 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 27 H -0.25 -11.23 6.52 99.48 0.65 -10.58 16 28 C 0.13 2.87 5.08 86.52 0.44 3.31 16 29 H 0.07 0.20 6.56 -2.39 -0.02 0.19 16 30 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 34 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 35 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.05 0.82 8.10 -2.39 -0.02 0.81 16 37 H 0.05 0.82 8.10 -2.39 -0.02 0.80 16 38 H 0.12 0.46 7.94 -2.39 -0.02 0.44 16 39 H 0.12 0.45 6.11 -2.39 -0.01 0.43 16 40 H 0.12 -0.04 5.93 -2.39 -0.01 -0.05 16 41 H 0.08 0.38 8.14 -2.38 -0.02 0.36 16 42 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 43 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 44 H 0.09 0.67 7.53 -2.38 -0.02 0.65 16 45 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 46 H 0.42 6.78 7.87 -92.71 -0.73 6.05 16 47 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 48 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 49 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 50 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 51 H 0.37 16.47 5.53 -92.72 -0.51 15.96 16 52 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 53 H 0.07 1.55 7.97 -2.38 -0.02 1.53 16 54 H 0.06 1.81 7.00 -2.39 -0.02 1.79 16 Total: -1.00 -82.43 421.83 1.39 -81.04 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: -0.42 Total: 23.04 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: 6.51 Total: 15.69 kcal Atomic # 7 Polarization: -122.63 SS G_CDS: -6.50 Total: -129.13 kcal Atomic # 8 Polarization: -38.19 SS G_CDS: -0.09 Total: -38.28 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.90 Total: 47.64 kcal Total: -82.43 1.39 -81.04 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317291475.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.725 kcal (2) G-P(sol) polarization free energy of solvation -82.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds