Wall clock time and date at job start Sat Apr 11 2020 05:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36939 * 119.99531 * 2 1 4 4 H 1.07997 * 120.00085 * 202.84344 * 3 2 1 5 5 C 1.38818 * 120.00431 * 22.84523 * 3 2 1 6 6 N 1.31622 * 119.99436 * 13.23093 * 5 3 2 7 7 Si 1.86791 * 120.00295 * 193.23283 * 5 3 2 8 8 H 1.48497 * 109.47290 * 89.99690 * 7 5 3 9 9 H 1.48501 * 109.47308 * 209.99750 * 7 5 3 10 10 H 1.48499 * 109.47192 * 329.99748 * 7 5 3 11 11 C 1.46490 * 120.00498 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47330 * 89.99868 * 11 2 1 13 13 H 1.09002 * 110.88508 * 308.88186 * 12 11 2 14 14 C 1.55155 * 111.00063 * 72.80768 * 12 11 2 15 15 C 1.54341 * 103.01972 * 153.38343 * 14 12 11 16 16 N 1.47022 * 107.26194 * 338.13950 * 15 14 12 17 17 C 1.34774 * 125.64612 * 178.85666 * 16 15 14 18 18 O 1.21287 * 120.00287 * 179.68708 * 17 16 15 19 19 C 1.50702 * 120.00168 * 359.68090 * 17 16 15 20 20 N 1.46503 * 109.47367 * 180.02562 * 19 17 16 21 21 C 1.34774 * 120.00065 * 180.02562 * 20 19 17 22 22 O 1.21286 * 119.99813 * 0.02562 * 21 20 19 23 23 C 1.50698 * 119.99983 * 179.97438 * 21 20 19 24 24 C 1.53004 * 109.47272 * 179.97438 * 23 21 20 25 25 C 1.52998 * 109.46728 * 59.99917 * 24 23 21 26 26 C 1.52992 * 109.47189 * 180.02562 * 24 23 21 27 27 C 1.53005 * 109.47026 * 300.00609 * 24 23 21 28 28 C 1.47418 * 108.70612 * 358.58390 * 16 15 14 29 29 H 1.08994 * 109.47310 * 275.12984 * 1 2 3 30 30 H 1.09000 * 109.47390 * 35.13249 * 1 2 3 31 31 H 1.09005 * 109.46904 * 155.12987 * 1 2 3 32 32 H 0.97001 * 119.99946 * 179.97438 * 6 5 3 33 33 H 1.09003 * 109.47068 * 329.99524 * 11 2 1 34 34 H 1.09005 * 109.47268 * 210.00473 * 11 2 1 35 35 H 1.09005 * 110.72071 * 271.93522 * 14 12 11 36 36 H 1.08996 * 110.72341 * 35.21213 * 14 12 11 37 37 H 1.08996 * 109.99012 * 218.66475 * 15 14 12 38 38 H 1.09001 * 109.78242 * 97.49121 * 15 14 12 39 39 H 1.09007 * 109.46706 * 60.00691 * 19 17 16 40 40 H 1.08995 * 109.47214 * 300.00858 * 19 17 16 41 41 H 0.96999 * 119.99869 * 0.02562 * 20 19 17 42 42 H 1.09007 * 109.46948 * 60.00103 * 23 21 20 43 43 H 1.08995 * 109.47432 * 299.99990 * 23 21 20 44 44 H 1.09005 * 109.46794 * 60.00233 * 25 24 23 45 45 H 1.09003 * 109.46991 * 179.97438 * 25 24 23 46 46 H 1.08997 * 109.47395 * 299.99907 * 25 24 23 47 47 H 1.09007 * 109.47086 * 60.00340 * 26 24 23 48 48 H 1.09003 * 109.47283 * 180.02562 * 26 24 23 49 49 H 1.08995 * 109.47377 * 300.00176 * 26 24 23 50 50 H 1.08996 * 109.47179 * 59.99569 * 27 24 23 51 51 H 1.08999 * 109.46841 * 180.02562 * 27 24 23 52 52 H 1.09005 * 109.46411 * 299.99193 * 27 24 23 53 53 H 1.09002 * 110.36836 * 143.19801 * 28 16 15 54 54 H 1.09006 * 110.36749 * 265.41165 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1660 1.2228 -0.3631 5 6 1.5372 2.3410 0.4667 6 7 0.4113 2.2613 1.1438 7 14 2.3108 4.0083 0.1338 8 1 1.7909 4.5481 -1.1482 9 1 1.9706 4.9413 1.2379 10 1 3.7859 3.8611 0.0470 11 6 2.1975 -1.2686 -0.0006 12 6 2.4526 -1.7096 -1.4433 13 1 1.5294 -1.6961 -2.0227 14 6 3.5417 -0.8283 -2.1099 15 6 4.1395 -1.7651 -3.1810 16 7 3.8377 -3.1445 -2.7716 17 6 4.1717 -4.2574 -3.4546 18 8 3.8750 -5.3492 -3.0175 19 6 4.9136 -4.1452 -4.7616 20 7 5.1560 -5.4851 -5.3021 21 6 5.8092 -5.6319 -6.4718 22 8 6.1966 -4.6547 -7.0767 23 6 6.0591 -7.0102 -7.0275 24 6 6.8123 -6.8963 -8.3544 25 6 8.1493 -6.1896 -8.1228 26 6 7.0654 -8.2956 -8.9189 27 6 5.9746 -6.0896 -9.3487 28 6 3.1152 -3.1092 -1.4871 29 1 -0.3633 0.0919 1.0235 30 1 -0.3634 0.8404 -0.5914 31 1 -0.3633 -0.9324 -0.4322 32 1 -0.0165 3.0683 1.4703 33 1 1.6085 -2.0285 0.5130 34 1 3.1500 -1.1384 0.5134 35 1 3.0958 0.0532 -2.5707 36 1 4.3034 -0.5421 -1.3847 37 1 5.2186 -1.6234 -3.2396 38 1 3.6831 -1.5574 -4.1488 39 1 5.8662 -3.6418 -4.5965 40 1 4.3169 -3.5705 -5.4699 41 1 4.8465 -6.2667 -4.8181 42 1 5.1064 -7.5135 -7.1929 43 1 6.6555 -7.5850 -6.3190 44 1 8.7461 -6.7643 -7.4145 45 1 8.6861 -6.1089 -9.0681 46 1 7.9686 -5.1927 -7.7210 47 1 6.1126 -8.7987 -9.0840 48 1 7.6024 -8.2145 -9.8640 49 1 7.6620 -8.8706 -8.2107 50 1 5.7938 -5.0927 -8.9467 51 1 6.5109 -6.0089 -10.2942 52 1 5.0220 -6.5932 -9.5137 53 1 2.3551 -3.8899 -1.4578 54 1 3.8115 -3.2273 -0.6568 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317863484.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:49 Heat of formation + Delta-G solvation = -77.823181 kcal Electronic energy + Delta-G solvation = -29813.830920 eV Core-core repulsion = 25785.212657 eV Total energy + Delta-G solvation = -4028.618263 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 3.28 seconds Orbital eigenvalues (eV) -41.54104 -40.82168 -39.03482 -37.52373 -37.08604 -35.43878 -33.95867 -32.31747 -30.63867 -30.22310 -28.27920 -28.06775 -27.99094 -27.81417 -26.51958 -24.10695 -23.11566 -21.72901 -21.08205 -20.65704 -19.74673 -18.74067 -18.53136 -17.57393 -17.50102 -17.08686 -16.87445 -16.45718 -16.00705 -15.73427 -15.34402 -15.24482 -15.14436 -15.08243 -14.84925 -14.58306 -14.43919 -14.12484 -13.72073 -13.63120 -13.55471 -13.28677 -13.00274 -12.93109 -12.91971 -12.80974 -12.63940 -12.60711 -12.34670 -12.19775 -12.14971 -12.01619 -11.96672 -11.76608 -11.61335 -11.55205 -11.50705 -11.36237 -11.14227 -10.57987 -10.51719 -10.16215 -9.73924 -8.71609 -7.76429 -5.24562 1.40021 1.49739 1.51078 1.58735 1.64770 1.65093 2.34797 2.55252 3.27273 3.37088 3.60326 3.72367 3.75014 3.87893 3.95376 3.96782 4.14018 4.24741 4.25782 4.36181 4.38411 4.44359 4.62128 4.63751 4.66879 4.67482 4.69701 4.86468 4.86890 4.87789 4.89362 4.89489 5.02004 5.02086 5.11817 5.12159 5.14345 5.20308 5.22197 5.32396 5.35866 5.40900 5.42011 5.52738 5.56290 5.69059 5.71099 5.76424 6.37391 6.40642 6.50016 6.90947 7.20996 7.24405 7.93399 8.38216 9.27237 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.024079 B = 0.001809 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.541807 B =15473.539584 C =16206.191112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.615 5.615 3 C -0.245 4.245 4 H 0.082 0.918 5 C -0.061 4.061 6 N -0.944 5.944 7 Si 0.962 3.038 8 H -0.289 1.289 9 H -0.303 1.303 10 H -0.264 1.264 11 C 0.161 3.839 12 C -0.106 4.106 13 H 0.067 0.933 14 C -0.111 4.111 15 C 0.099 3.901 16 N -0.610 5.610 17 C 0.523 3.477 18 O -0.575 6.575 19 C 0.111 3.889 20 N -0.719 5.719 21 C 0.513 3.487 22 O -0.559 6.559 23 C -0.128 4.128 24 C -0.053 4.053 25 C -0.152 4.152 26 C -0.138 4.138 27 C -0.152 4.152 28 C 0.118 3.882 29 H 0.002 0.998 30 H 0.013 0.987 31 H 0.028 0.972 32 H 0.244 0.756 33 H 0.046 0.954 34 H 0.051 0.949 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.107 0.893 40 H 0.104 0.896 41 H 0.415 0.585 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.054 0.946 45 H 0.051 0.949 46 H 0.060 0.940 47 H 0.063 0.937 48 H 0.057 0.943 49 H 0.063 0.937 50 H 0.060 0.940 51 H 0.051 0.949 52 H 0.053 0.947 53 H 0.070 0.930 54 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.900 -20.053 -17.894 29.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.338 5.338 3 C -0.375 4.375 4 H 0.100 0.900 5 C -0.255 4.255 6 N -0.591 5.591 7 Si 0.792 3.208 8 H -0.217 1.217 9 H -0.230 1.230 10 H -0.189 1.189 11 C 0.034 3.966 12 C -0.128 4.128 13 H 0.085 0.915 14 C -0.149 4.149 15 C -0.023 4.023 16 N -0.343 5.343 17 C 0.312 3.688 18 O -0.456 6.456 19 C -0.016 4.016 20 N -0.375 5.375 21 C 0.302 3.698 22 O -0.439 6.439 23 C -0.168 4.168 24 C -0.053 4.053 25 C -0.209 4.209 26 C -0.196 4.196 27 C -0.209 4.209 28 C -0.005 4.005 29 H 0.020 0.980 30 H 0.032 0.968 31 H 0.046 0.954 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.109 0.891 38 H 0.101 0.899 39 H 0.125 0.875 40 H 0.122 0.878 41 H 0.253 0.747 42 H 0.130 0.870 43 H 0.131 0.869 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.079 0.921 47 H 0.082 0.918 48 H 0.076 0.924 49 H 0.082 0.918 50 H 0.079 0.921 51 H 0.070 0.930 52 H 0.072 0.928 53 H 0.088 0.912 54 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 12.951 -19.864 -18.050 29.801 hybrid contribution -0.379 1.116 0.545 1.299 sum 12.572 -18.747 -17.506 28.565 Atomic orbital electron populations 1.20512 0.83240 0.95663 0.97461 1.44095 1.01814 1.01771 1.86078 1.19578 0.98407 0.86118 1.33380 0.90032 1.25782 0.98803 1.01800 0.99094 1.70244 1.21196 1.27213 1.40492 0.85325 0.78686 0.80350 0.76484 1.21662 1.22993 1.18856 1.20763 0.95915 0.86842 0.93059 1.22864 0.97851 0.92822 0.99243 0.91468 1.22518 0.97562 0.97504 0.97331 1.22319 1.01645 0.79289 0.99001 1.48531 1.55987 1.06749 1.23016 1.20440 0.79359 0.82838 0.86133 1.90674 1.57027 1.27219 1.70642 1.20977 1.01505 0.87067 0.92057 1.45871 1.59178 1.08729 1.23685 1.21214 0.76184 0.92875 0.79505 1.90603 1.51571 1.42471 1.59211 1.21846 1.03946 0.92675 0.98322 1.20305 0.95231 0.96395 0.93415 1.22065 0.95910 1.01484 1.01409 1.21857 1.02205 0.94414 1.01077 1.22068 0.99212 1.01096 0.98523 1.22212 0.95533 0.97575 0.85218 0.97957 0.96804 0.95378 0.94662 0.93549 0.93092 0.90670 0.90932 0.89062 0.89851 0.87513 0.87810 0.74720 0.87033 0.86938 0.92725 0.93014 0.92095 0.91802 0.92377 0.91755 0.92131 0.92998 0.92791 0.91179 0.90722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.46 8.98 127.77 1.15 9.61 16 2 N -0.61 -28.69 2.91 -726.95 -2.11 -30.80 16 3 C -0.24 -12.42 9.16 84.03 0.77 -11.65 16 4 H 0.08 3.88 7.09 -2.91 -0.02 3.86 16 5 C -0.06 -3.27 5.10 84.86 0.43 -2.84 16 6 N -0.94 -55.11 10.71 21.65 0.23 -54.88 16 7 Si 0.96 43.68 29.57 68.60 2.03 45.71 16 8 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 9 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 10 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 11 C 0.16 5.82 5.17 86.38 0.45 6.27 16 12 C -0.11 -3.12 3.26 -9.40 -0.03 -3.15 16 13 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 14 C -0.11 -2.95 5.28 31.79 0.17 -2.79 16 15 C 0.10 1.98 6.49 86.73 0.56 2.55 16 16 N -0.61 -14.10 3.33 -811.76 -2.70 -16.80 16 17 C 0.52 12.15 7.92 87.66 0.69 12.84 16 18 O -0.58 -16.60 15.92 -3.05 -0.05 -16.65 16 19 C 0.11 2.02 5.35 85.63 0.46 2.48 16 20 N -0.72 -12.34 5.53 -466.78 -2.58 -14.92 16 21 C 0.51 9.00 7.24 87.66 0.63 9.64 16 22 O -0.56 -13.07 11.35 -3.05 -0.03 -13.10 16 23 C -0.13 -1.46 4.77 29.85 0.14 -1.32 16 24 C -0.05 -0.68 0.77 -52.18 -0.04 -0.73 16 25 C -0.15 -2.33 8.18 71.98 0.59 -1.74 16 26 C -0.14 -1.25 8.47 71.98 0.61 -0.64 16 27 C -0.15 -2.36 8.18 71.98 0.59 -1.77 16 28 C 0.12 3.02 6.37 86.86 0.55 3.57 16 29 H 0.00 0.11 7.34 -2.39 -0.02 0.10 16 30 H 0.01 0.70 7.34 -2.39 -0.02 0.68 16 31 H 0.03 1.14 8.03 -2.38 -0.02 1.12 16 32 H 0.24 14.02 8.31 -92.71 -0.77 13.24 16 33 H 0.05 1.61 8.07 -2.39 -0.02 1.59 16 34 H 0.05 1.84 7.87 -2.38 -0.02 1.82 16 35 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 36 H 0.07 1.99 7.76 -2.39 -0.02 1.97 16 37 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.11 1.78 8.14 -2.38 -0.02 1.76 16 40 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.41 6.69 7.44 -92.71 -0.69 6.00 16 42 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 43 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 45 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.06 1.25 5.51 -2.39 -0.01 1.24 16 47 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 48 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 49 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 50 H 0.06 1.26 5.51 -2.39 -0.01 1.24 16 51 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 52 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 53 H 0.07 1.89 8.04 -2.39 -0.02 1.87 16 54 H 0.07 1.86 8.04 -2.38 -0.02 1.84 16 Total: -1.00 -66.60 419.80 2.68 -63.92 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: 0.17 Total: 17.17 kcal Atomic # 6 Polarization: 12.62 SS G_CDS: 7.73 Total: 20.34 kcal Atomic # 7 Polarization: -110.23 SS G_CDS: -7.16 Total: -117.39 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -0.08 Total: -29.75 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -66.60 2.68 -63.92 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317863484.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.902 kcal (2) G-P(sol) polarization free energy of solvation -66.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.28 seconds