Wall clock time and date at job start Sat Apr 11 2020 05:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21279 * 119.99976 * 2 1 4 4 N 1.34780 * 120.00247 * 180.02562 * 2 1 3 5 5 C 1.46498 * 120.00282 * 186.62152 * 4 2 1 6 6 C 1.52995 * 109.47400 * 189.42651 * 5 4 2 7 7 C 1.50701 * 109.47145 * 309.43066 * 5 4 2 8 8 O 1.21280 * 120.00370 * 139.19458 * 7 5 4 9 9 N 1.34782 * 119.99619 * 319.18730 * 7 5 4 10 10 C 1.47019 * 125.65065 * 354.99583 * 9 7 5 11 11 C 1.54321 * 107.27276 * 181.01188 * 10 9 7 12 12 C 1.55159 * 102.94183 * 22.18994 * 11 10 9 13 13 H 1.09005 * 110.99898 * 82.60766 * 12 11 10 14 14 C 1.52992 * 111.00491 * 206.42274 * 12 11 10 15 15 N 1.46499 * 109.47589 * 293.54725 * 14 12 11 16 16 C 1.46504 * 119.99544 * 89.99886 * 15 14 12 17 17 C 1.36935 * 120.00075 * 270.00469 * 15 14 12 18 18 H 1.07993 * 120.00089 * 334.74689 * 17 15 14 19 19 C 1.38810 * 119.99884 * 154.75421 * 17 15 14 20 20 N 1.31626 * 120.00318 * 4.20124 * 19 17 15 21 21 Si 1.86800 * 119.99889 * 184.19981 * 19 17 15 22 22 H 1.48502 * 109.47158 * 89.99816 * 21 19 17 23 23 H 1.48502 * 109.47227 * 209.99930 * 21 19 17 24 24 H 1.48498 * 109.47205 * 329.99968 * 21 19 17 25 25 C 1.47421 * 125.64590 * 174.94100 * 9 7 5 26 26 C 1.53009 * 109.46825 * 69.42500 * 5 4 2 27 27 C 1.52997 * 109.47167 * 301.15409 * 26 5 4 28 28 C 1.53000 * 109.46944 * 61.15533 * 26 5 4 29 29 H 1.09004 * 109.46559 * 269.99232 * 1 2 3 30 30 H 1.08998 * 109.47287 * 29.99514 * 1 2 3 31 31 H 1.08999 * 109.46952 * 150.00008 * 1 2 3 32 32 H 0.97006 * 119.99834 * 6.62189 * 4 2 1 33 33 H 1.08996 * 109.47477 * 180.02562 * 6 5 4 34 34 H 1.09008 * 109.46900 * 300.00441 * 6 5 4 35 35 H 1.08998 * 109.47373 * 59.99721 * 6 5 4 36 36 H 1.09000 * 109.88546 * 61.59004 * 10 9 7 37 37 H 1.09000 * 109.88323 * 300.42929 * 10 9 7 38 38 H 1.08998 * 110.71719 * 263.82876 * 11 10 9 39 39 H 1.09002 * 110.87349 * 140.62472 * 11 10 9 40 40 H 1.09002 * 109.47529 * 173.54783 * 14 12 11 41 41 H 1.09006 * 109.46905 * 53.55048 * 14 12 11 42 42 H 1.09008 * 109.47015 * 264.77246 * 16 15 14 43 43 H 1.09005 * 109.47194 * 144.77963 * 16 15 14 44 44 H 1.08995 * 109.47871 * 24.77172 * 16 15 14 45 45 H 0.96997 * 119.99933 * 179.97438 * 20 19 17 46 46 H 1.09001 * 110.37160 * 37.07899 * 25 9 7 47 47 H 1.09002 * 110.36544 * 274.76083 * 25 9 7 48 48 H 1.08998 * 109.47065 * 181.15337 * 26 5 4 49 49 H 1.08998 * 109.47061 * 66.99287 * 27 26 5 50 50 H 1.09000 * 109.46773 * 186.99634 * 27 26 5 51 51 H 1.09003 * 109.46891 * 306.99560 * 27 26 5 52 52 H 1.08995 * 109.47446 * 65.26808 * 28 26 5 53 53 H 1.09004 * 109.46828 * 185.26984 * 28 26 5 54 54 H 1.08998 * 109.46912 * 305.26616 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6386 -1.1715 0.1458 6 6 4.1738 -2.5798 -0.1206 7 6 4.2454 -0.2083 -0.8417 8 8 5.1704 0.5011 -0.5069 9 7 3.7602 -0.1354 -2.0971 10 6 2.7185 -1.0036 -2.6649 11 6 2.5082 -0.5687 -4.1305 12 6 3.8411 0.1469 -4.4753 13 1 4.6095 -0.5731 -4.7570 14 6 3.6361 1.1860 -5.5794 15 7 3.2812 0.5078 -6.8285 16 6 1.8749 0.2502 -7.1482 17 6 4.2640 0.1146 -7.6973 18 1 5.2161 0.6242 -7.7019 19 6 4.0364 -0.9389 -8.5720 20 7 2.8497 -1.5060 -8.6246 21 14 5.4141 -1.5518 -9.6744 22 1 6.1692 -2.6221 -8.9746 23 1 4.8384 -2.0933 -10.9317 24 1 6.3302 -0.4275 -9.9935 25 6 4.1855 0.8290 -3.1278 26 6 4.0097 -0.7454 1.5677 27 6 3.4498 0.6514 1.8440 28 6 3.4176 -1.7394 2.5688 29 1 -0.3632 -0.0001 1.0277 30 1 -0.3634 0.8900 -0.5137 31 1 -0.3633 -0.8900 -0.5138 32 1 1.7008 -2.0045 -0.0978 33 1 5.2582 -2.5831 -0.0114 34 1 3.7348 -3.2765 0.5937 35 1 3.9094 -2.8834 -1.1335 36 1 1.7905 -0.8837 -2.1058 37 1 3.0430 -2.0436 -2.6298 38 1 1.6681 0.1211 -4.2113 39 1 2.3576 -1.4348 -4.7749 40 1 4.5570 1.7513 -5.7219 41 1 2.8330 1.8656 -5.2941 42 1 1.6096 -0.7591 -6.8330 43 1 1.7230 0.3467 -8.2232 44 1 1.2456 0.9709 -6.6261 45 1 2.6906 -2.2420 -9.2361 46 1 5.2579 1.0109 -3.0579 47 1 3.6339 1.7634 -3.0237 48 1 5.0946 -0.7288 1.6705 49 1 2.3608 0.6090 1.8637 50 1 3.8172 1.0061 2.8070 51 1 3.7726 1.3342 1.0580 52 1 3.8857 -2.7143 2.4330 53 1 3.6016 -1.3862 3.5835 54 1 2.3438 -1.8257 2.4033 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317863850.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:01 Heat of formation + Delta-G solvation = -48.972867 kcal Electronic energy + Delta-G solvation = -32796.389839 eV Core-core repulsion = 28769.022620 eV Total energy + Delta-G solvation = -4027.367219 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 5.95 seconds Orbital eigenvalues (eV) -42.42901 -40.16041 -39.04990 -37.39196 -37.06977 -34.58168 -33.73610 -32.29116 -31.38211 -30.42626 -29.91930 -28.13096 -27.92269 -27.13679 -25.49509 -23.91228 -22.94355 -22.07178 -21.46929 -21.14149 -19.98985 -18.71456 -18.32873 -17.85486 -17.66206 -16.97698 -16.68932 -16.40455 -16.03443 -15.45749 -15.42593 -15.10504 -15.01952 -14.72353 -14.64809 -14.31008 -14.27272 -13.87104 -13.73309 -13.44996 -13.39099 -13.29543 -13.29146 -13.11152 -13.02114 -12.81336 -12.77127 -12.63187 -12.54869 -12.41275 -12.16373 -12.07456 -11.99391 -11.79630 -11.75589 -11.60241 -11.58047 -11.37082 -10.96429 -10.71870 -10.58014 -9.81466 -9.55924 -8.71881 -7.81540 -5.28277 1.46265 1.47714 1.55496 1.55649 1.70092 2.00491 2.32337 2.51106 3.30111 3.37342 3.57891 3.70537 3.73519 3.74859 3.94363 4.00581 4.14687 4.21192 4.27266 4.40007 4.41749 4.51647 4.54538 4.57542 4.58730 4.67345 4.70924 4.77141 4.79298 4.84184 4.89072 4.93561 4.99497 5.00737 5.03120 5.06779 5.12386 5.13437 5.21473 5.28568 5.33458 5.38745 5.45249 5.48945 5.49947 5.61084 5.67236 5.85080 6.38091 6.55602 6.66489 7.17545 7.21140 7.35240 7.91201 8.34885 9.21307 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.018887 B = 0.003024 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.165163 B = 9258.385147 C = 9632.867971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.495 3.505 3 O -0.562 6.562 4 N -0.707 5.707 5 C 0.174 3.826 6 C -0.155 4.155 7 C 0.534 3.466 8 O -0.588 6.588 9 N -0.607 5.607 10 C 0.108 3.892 11 C -0.106 4.106 12 C -0.104 4.104 13 H 0.055 0.945 14 C 0.164 3.836 15 N -0.616 5.616 16 C 0.185 3.815 17 C -0.263 4.263 18 H 0.064 0.936 19 C -0.042 4.042 20 N -0.931 5.931 21 Si 0.961 3.039 22 H -0.286 1.286 23 H -0.293 1.293 24 H -0.275 1.275 25 C 0.120 3.880 26 C -0.085 4.085 27 C -0.134 4.134 28 C -0.136 4.136 29 H 0.111 0.889 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.424 0.576 33 H 0.069 0.931 34 H 0.115 0.885 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.040 0.960 41 H 0.055 0.945 42 H 0.011 0.989 43 H 0.020 0.980 44 H 0.018 0.982 45 H 0.248 0.752 46 H 0.053 0.947 47 H 0.059 0.941 48 H 0.064 0.936 49 H 0.059 0.941 50 H 0.035 0.965 51 H 0.042 0.958 52 H 0.076 0.924 53 H 0.057 0.943 54 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.655 -5.884 22.719 24.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.285 3.715 3 O -0.441 6.441 4 N -0.365 5.365 5 C 0.084 3.916 6 C -0.213 4.213 7 C 0.323 3.677 8 O -0.468 6.468 9 N -0.340 5.340 10 C -0.014 4.014 11 C -0.144 4.144 12 C -0.126 4.126 13 H 0.073 0.927 14 C 0.037 3.963 15 N -0.339 5.339 16 C 0.040 3.960 17 C -0.394 4.394 18 H 0.081 0.919 19 C -0.238 4.238 20 N -0.578 5.578 21 Si 0.790 3.210 22 H -0.213 1.213 23 H -0.219 1.219 24 H -0.200 1.200 25 C -0.004 4.004 26 C -0.105 4.105 27 C -0.191 4.191 28 C -0.193 4.193 29 H 0.130 0.870 30 H 0.102 0.898 31 H 0.129 0.871 32 H 0.263 0.737 33 H 0.088 0.912 34 H 0.133 0.867 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.029 0.971 43 H 0.039 0.961 44 H 0.036 0.964 45 H 0.057 0.943 46 H 0.072 0.928 47 H 0.077 0.923 48 H 0.083 0.917 49 H 0.078 0.922 50 H 0.054 0.946 51 H 0.061 0.939 52 H 0.095 0.905 53 H 0.076 0.924 54 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.810 -4.880 22.862 24.348 hybrid contribution 0.897 -0.305 -1.162 1.499 sum -5.913 -5.185 21.700 23.081 Atomic orbital electron populations 1.21923 0.88218 1.06110 1.06186 1.21471 0.92133 0.83257 0.74654 1.90865 1.70919 1.33389 1.48889 1.46131 1.05266 1.10110 1.75031 1.20466 0.81818 0.96101 0.93259 1.22169 1.02526 0.92064 1.04495 1.20944 0.81994 0.83361 0.81359 1.90628 1.31646 1.46284 1.78206 1.48454 1.39788 1.34541 1.11202 1.22336 0.91256 0.94136 0.93652 1.22446 0.97034 1.00637 0.94257 1.22826 0.97668 0.98821 0.93261 0.92664 1.20789 0.98440 0.92497 0.84543 1.44055 1.02851 1.69124 1.17848 1.20612 0.82460 0.95648 0.97263 1.19463 0.95533 1.10465 1.13904 0.91862 1.25752 0.98663 0.97353 1.01983 1.70231 1.21186 1.26101 1.40296 0.85367 0.79381 0.78338 0.77950 1.21332 1.21907 1.20025 1.22070 0.99105 0.92395 0.86838 1.21305 1.00480 0.96248 0.92442 1.22187 1.00713 0.96594 0.99620 1.21828 1.01668 0.98318 0.97514 0.87046 0.89808 0.87093 0.73662 0.91187 0.86669 0.90773 0.89505 0.90270 0.91030 0.91353 0.94166 0.92635 0.97099 0.96122 0.96354 0.94286 0.92814 0.92277 0.91724 0.92193 0.94646 0.93938 0.90479 0.92352 0.91122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.61 10.31 71.24 0.73 -0.87 16 2 C 0.50 9.20 4.01 87.66 0.35 9.56 16 3 O -0.56 -16.79 11.25 -3.02 -0.03 -16.83 16 4 N -0.71 -9.88 2.32 -426.32 -0.99 -10.87 16 5 C 0.17 3.51 0.37 2.86 0.00 3.51 16 6 C -0.16 -2.18 8.15 71.98 0.59 -1.59 16 7 C 0.53 16.89 4.25 87.66 0.37 17.26 16 8 O -0.59 -23.92 14.99 -3.03 -0.05 -23.97 16 9 N -0.61 -18.71 3.01 -811.81 -2.44 -21.16 16 10 C 0.11 2.66 5.62 86.73 0.49 3.14 16 11 C -0.11 -3.30 5.39 31.78 0.17 -3.12 16 12 C -0.10 -3.79 3.29 -9.40 -0.03 -3.82 16 13 H 0.05 2.32 8.14 -2.38 -0.02 2.30 16 14 C 0.16 6.65 5.21 86.38 0.45 7.10 16 15 N -0.62 -30.20 2.85 -726.93 -2.07 -32.27 16 16 C 0.18 8.82 8.15 127.77 1.04 9.87 16 17 C -0.26 -14.37 9.67 84.03 0.81 -13.55 16 18 H 0.06 3.43 7.83 -2.91 -0.02 3.41 16 19 C -0.04 -2.32 5.38 84.86 0.46 -1.87 16 20 N -0.93 -52.98 10.12 21.65 0.22 -52.76 16 21 Si 0.96 44.73 29.56 68.60 2.03 46.76 16 22 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 23 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 24 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 25 C 0.12 4.18 6.40 86.85 0.56 4.73 16 26 C -0.08 -1.79 1.96 -10.79 -0.02 -1.81 16 27 C -0.13 -3.59 7.21 71.98 0.52 -3.07 16 28 C -0.14 -1.66 8.57 71.98 0.62 -1.04 16 29 H 0.11 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.42 2.43 8.50 -92.70 -0.79 1.64 16 33 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.11 0.77 6.53 -2.38 -0.02 0.76 16 35 H 0.07 1.03 6.26 -2.39 -0.01 1.01 16 36 H 0.09 1.69 5.20 -2.39 -0.01 1.68 16 37 H 0.08 1.68 6.44 -2.39 -0.02 1.67 16 38 H 0.07 2.17 8.01 -2.39 -0.02 2.15 16 39 H 0.07 2.41 7.75 -2.39 -0.02 2.39 16 40 H 0.04 1.65 8.04 -2.39 -0.02 1.63 16 41 H 0.06 2.05 7.82 -2.38 -0.02 2.04 16 42 H 0.01 0.54 6.98 -2.38 -0.02 0.52 16 43 H 0.02 1.08 7.00 -2.38 -0.02 1.07 16 44 H 0.02 0.75 7.83 -2.39 -0.02 0.73 16 45 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 46 H 0.05 2.03 7.99 -2.39 -0.02 2.01 16 47 H 0.06 2.10 8.04 -2.39 -0.02 2.08 16 48 H 0.06 1.62 7.86 -2.39 -0.02 1.60 16 49 H 0.06 1.47 5.35 -2.39 -0.01 1.46 16 50 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 51 H 0.04 1.53 4.91 -2.39 -0.01 1.52 16 52 H 0.08 0.65 6.71 -2.39 -0.02 0.64 16 53 H 0.06 0.72 8.14 -2.38 -0.02 0.71 16 54 H 0.07 0.66 7.48 -2.39 -0.02 0.64 16 Total: -1.00 -76.94 397.20 3.87 -73.07 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 0.10 Total: 13.59 kcal Atomic # 6 Polarization: 17.32 SS G_CDS: 7.11 Total: 24.43 kcal Atomic # 7 Polarization: -111.77 SS G_CDS: -5.29 Total: -117.06 kcal Atomic # 8 Polarization: -40.72 SS G_CDS: -0.08 Total: -40.80 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -76.94 3.87 -73.07 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317863850.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.098 kcal (2) G-P(sol) polarization free energy of solvation -76.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.95 seconds