Wall clock time and date at job start Sat Apr 11 2020 05:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47171 * 2 1 4 4 C 1.53001 * 109.47373 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47167 * 180.02562 * 4 3 2 6 6 C 1.53008 * 109.46875 * 59.99945 * 3 2 1 7 7 C 1.52997 * 109.47230 * 60.00279 * 6 3 2 8 8 C 1.50699 * 109.47116 * 300.00164 * 3 2 1 9 9 O 1.21283 * 120.00134 * 119.99783 * 8 3 2 10 10 N 1.34778 * 119.99924 * 299.99758 * 8 3 2 11 11 C 1.46493 * 120.00049 * 180.02562 * 10 8 3 12 12 C 1.52999 * 109.47321 * 179.97438 * 11 10 8 13 13 C 1.53510 * 114.17337 * 175.00036 * 12 11 10 14 14 N 1.47482 * 87.93436 * 139.67421 * 13 12 11 15 15 C 1.46901 * 110.99764 * 221.29834 * 14 13 12 16 16 C 1.50701 * 109.46921 * 169.99672 * 15 14 13 17 17 O 1.21294 * 119.99849 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99795 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99707 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99704 * 359.97438 * 19 18 16 21 21 C 1.38941 * 119.99927 * 180.02562 * 19 18 16 22 22 N 1.31417 * 120.00180 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00273 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.46986 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47457 * 119.99901 * 23 21 19 26 26 H 1.48501 * 109.47104 * 239.99973 * 23 21 19 27 27 C 1.47484 * 87.83324 * 332.98752 * 14 13 12 28 28 H 1.09008 * 109.47128 * 60.00130 * 1 2 3 29 29 H 1.08997 * 109.47060 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47422 * 300.00322 * 1 2 3 31 31 H 1.09001 * 109.47349 * 240.00373 * 2 1 3 32 32 H 1.08995 * 109.47418 * 119.99842 * 2 1 3 33 33 H 1.08999 * 109.47227 * 300.00218 * 4 3 2 34 34 H 1.09001 * 109.46856 * 60.00551 * 4 3 2 35 35 H 1.08999 * 109.47219 * 180.02562 * 5 4 3 36 36 H 1.09008 * 109.46928 * 300.00272 * 5 4 3 37 37 H 1.08995 * 109.47477 * 59.99991 * 5 4 3 38 38 H 1.08997 * 109.46947 * 180.02562 * 6 3 2 39 39 H 1.09005 * 109.46992 * 299.99944 * 6 3 2 40 40 H 1.09004 * 109.46881 * 300.00129 * 7 6 3 41 41 H 1.08991 * 109.47357 * 59.99798 * 7 6 3 42 42 H 1.09001 * 109.47343 * 180.02562 * 7 6 3 43 43 H 0.96999 * 119.99506 * 359.97438 * 10 8 3 44 44 H 1.09011 * 109.47206 * 60.00018 * 11 10 8 45 45 H 1.08998 * 109.47548 * 299.99873 * 11 10 8 46 46 H 1.09000 * 113.25471 * 42.05042 * 12 11 10 47 47 H 1.08999 * 113.47482 * 24.90332 * 13 12 11 48 48 H 1.09004 * 113.47828 * 254.43977 * 13 12 11 49 49 H 1.09002 * 109.47401 * 49.99700 * 15 14 13 50 50 H 1.09001 * 109.46874 * 289.99713 * 15 14 13 51 51 H 0.96995 * 120.00011 * 0.02562 * 18 16 15 52 52 H 0.97000 * 119.99884 * 180.02562 * 22 21 19 53 53 H 1.09002 * 113.46980 * 141.77763 * 27 14 13 54 54 H 1.08997 * 113.47937 * 272.24324 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8851 0.0013 6 6 1.5299 2.1638 1.2493 7 6 2.0399 1.4426 2.4985 8 6 1.5376 2.1530 -1.2304 9 8 0.8403 3.1390 -1.1192 10 7 1.8632 1.6925 -2.4546 11 6 1.3754 2.3834 -3.6507 12 6 1.8858 1.6625 -4.8999 13 6 1.3385 2.2262 -6.2187 14 7 2.6848 2.0452 -6.7930 15 6 3.0566 3.1906 -7.6342 16 6 4.5149 3.0917 -8.0015 17 8 5.1788 2.1584 -7.6022 18 7 5.0809 4.0396 -8.7745 19 6 6.4074 3.9493 -9.1091 20 1 6.9988 3.1187 -8.7528 21 6 6.9911 4.9267 -9.9055 22 7 6.2715 5.9376 -10.3386 23 14 8.7982 4.8034 -10.3620 24 1 9.3801 3.5803 -9.7533 25 1 8.9320 4.7333 -11.8393 26 1 9.5193 5.9988 -9.8559 27 6 3.2255 2.1936 -5.4289 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.9330 0.9289 0.8908 34 1 3.9337 0.9287 -0.8892 35 1 5.1699 2.8851 0.0013 36 1 3.7169 3.3992 -0.8887 37 1 3.7163 3.3987 0.8912 38 1 1.8929 3.1915 1.2491 39 1 0.4399 2.1638 1.2493 40 1 1.6766 0.4148 2.4985 41 1 3.1298 1.4426 2.4986 42 1 1.6762 1.9561 3.3885 43 1 2.4212 0.9041 -2.5435 44 1 1.7391 3.4110 -3.6505 45 1 0.2854 2.3838 -3.6509 46 1 1.8321 0.5766 -4.8223 47 1 1.0321 3.2700 -6.1508 48 1 0.5808 1.5930 -6.6804 49 1 2.8822 4.1162 -7.0856 50 1 2.4523 3.1865 -8.5413 51 1 4.5498 4.7856 -9.0941 52 1 6.6790 6.6197 -10.8950 53 1 4.0671 1.5328 -5.2212 54 1 3.4228 3.2288 -5.1502 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318166154.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:28 Heat of formation + Delta-G solvation = -84.108985 kcal Electronic energy + Delta-G solvation = -30334.388497 eV Core-core repulsion = 26305.497661 eV Total energy + Delta-G solvation = -4028.890836 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.80644 -41.25163 -39.62447 -37.96026 -36.06726 -35.77848 -33.35101 -33.21260 -32.38733 -31.53476 -29.02714 -27.73533 -26.91135 -26.56713 -25.13740 -24.05854 -22.92164 -22.35638 -21.08525 -20.91681 -19.93952 -19.47732 -17.87508 -17.79131 -17.26432 -16.96165 -16.71532 -16.61352 -16.38129 -16.25666 -15.90021 -15.62032 -15.25646 -14.95301 -14.66040 -14.48560 -14.06549 -13.99843 -13.69481 -13.67242 -13.62312 -13.54881 -13.39438 -13.09248 -13.05365 -12.88543 -12.59746 -12.51349 -12.44476 -12.33739 -12.22918 -12.13671 -12.10893 -11.84861 -11.62427 -11.56748 -11.47452 -11.22327 -11.21153 -10.59688 -10.36651 -10.07730 -10.04432 -9.78961 -8.49272 -5.98277 1.34580 1.39796 1.54184 1.70491 2.01426 2.19309 2.27172 2.84626 3.16715 3.23801 3.42236 3.61823 3.64467 3.72877 3.84842 4.07170 4.15521 4.20280 4.26268 4.27915 4.36922 4.41434 4.46327 4.46922 4.49328 4.49754 4.55597 4.60287 4.66512 4.70127 4.79956 4.82793 4.86399 4.89182 4.95195 5.04730 5.08787 5.10918 5.18636 5.26118 5.26571 5.32860 5.33685 5.34653 5.38933 5.39297 5.49336 5.65002 5.88274 6.05986 6.56838 6.57652 7.09792 7.28729 7.52564 8.08038 8.68416 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017214 B = 0.002052 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.163174 B =13639.125071 C =14517.346846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.111 4.111 3 C -0.071 4.071 4 C -0.112 4.112 5 C -0.158 4.158 6 C -0.102 4.102 7 C -0.151 4.151 8 C 0.525 3.475 9 O -0.586 6.586 10 N -0.719 5.719 11 C 0.138 3.862 12 C -0.103 4.103 13 C 0.010 3.990 14 N -0.472 5.472 15 C 0.021 3.979 16 C 0.440 3.560 17 O -0.618 6.618 18 N -0.575 5.575 19 C -0.332 4.332 20 H 0.078 0.922 21 C -0.015 4.015 22 N -0.921 5.921 23 Si 0.994 3.006 24 H -0.273 1.273 25 H -0.270 1.270 26 H -0.270 1.270 27 C 0.013 3.987 28 H 0.033 0.967 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.028 0.972 37 H 0.060 0.940 38 H 0.051 0.949 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.056 0.944 43 H 0.412 0.588 44 H 0.052 0.948 45 H 0.075 0.925 46 H 0.123 0.877 47 H 0.082 0.918 48 H 0.107 0.893 49 H 0.075 0.925 50 H 0.110 0.890 51 H 0.396 0.604 52 H 0.278 0.722 53 H 0.067 0.933 54 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.440 -10.288 22.711 27.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.148 4.148 3 C -0.074 4.074 4 C -0.149 4.149 5 C -0.216 4.216 6 C -0.140 4.140 7 C -0.208 4.208 8 C 0.313 3.687 9 O -0.466 6.466 10 N -0.370 5.370 11 C 0.013 3.987 12 C -0.122 4.122 13 C -0.119 4.119 14 N -0.194 5.194 15 C -0.111 4.111 16 C 0.228 3.772 17 O -0.504 6.504 18 N -0.212 5.212 19 C -0.461 4.461 20 H 0.096 0.904 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.817 3.183 24 H -0.198 1.198 25 H -0.195 1.195 26 H -0.196 1.196 27 C -0.117 4.117 28 H 0.052 0.948 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.047 0.953 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.075 0.925 43 H 0.248 0.752 44 H 0.070 0.930 45 H 0.093 0.907 46 H 0.141 0.859 47 H 0.101 0.899 48 H 0.125 0.875 49 H 0.093 0.907 50 H 0.128 0.872 51 H 0.229 0.771 52 H 0.087 0.913 53 H 0.085 0.915 54 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.270 -10.607 22.454 27.699 hybrid contribution 0.751 1.439 -0.618 1.737 sum -11.520 -9.167 21.836 26.335 Atomic orbital electron populations 1.21850 0.95953 1.02267 1.01264 1.21674 0.95925 0.92703 1.04528 1.20966 0.97260 0.97071 0.92117 1.21676 0.91460 0.97320 1.04444 1.21862 1.01500 0.97093 1.01101 1.21390 1.00504 0.98815 0.93273 1.21885 1.01853 1.00998 0.96019 1.21017 0.78718 0.83588 0.85397 1.90669 1.40143 1.28359 1.87451 1.45965 1.53602 1.32357 1.05120 1.21206 0.99333 0.95293 0.82820 1.22868 0.94752 1.01840 0.92715 1.23932 0.92840 1.01946 0.93185 1.68825 1.05832 1.35913 1.08827 1.22387 0.93047 0.94638 1.01009 1.20729 0.90372 0.83623 0.82497 1.90483 1.65680 1.35572 1.58648 1.41964 1.10472 1.23406 1.45395 1.19684 0.86788 1.09381 1.30294 0.90355 1.26071 1.04499 0.94640 0.96240 1.69682 1.38438 1.12306 1.35752 0.84857 0.76850 0.78307 0.78242 1.19751 1.19527 1.19556 1.23765 0.98354 1.00095 0.89440 0.94786 0.91042 0.92432 0.90391 0.88403 0.88230 0.90697 0.91649 0.95307 0.92143 0.93031 0.92457 0.91095 0.91530 0.92461 0.75186 0.92978 0.90654 0.85873 0.89940 0.87493 0.90718 0.87214 0.77056 0.91282 0.91474 0.92398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 9.31 71.98 0.67 -1.27 16 2 C -0.11 -1.12 4.54 30.59 0.14 -0.98 16 3 C -0.07 -1.03 0.21 -52.92 -0.01 -1.05 16 4 C -0.11 -1.40 4.54 30.59 0.14 -1.26 16 5 C -0.16 -2.69 9.31 71.98 0.67 -2.02 16 6 C -0.10 -1.62 3.57 30.60 0.11 -1.51 16 7 C -0.15 -1.52 9.21 71.98 0.66 -0.85 16 8 C 0.52 11.11 3.95 87.66 0.35 11.46 16 9 O -0.59 -17.51 15.98 -3.04 -0.05 -17.56 16 10 N -0.72 -12.82 5.34 -463.06 -2.47 -15.29 16 11 C 0.14 2.70 5.58 86.38 0.48 3.18 16 12 C -0.10 -2.02 4.09 -10.45 -0.04 -2.07 16 13 C 0.01 0.21 7.29 83.57 0.61 0.82 16 14 N -0.47 -14.94 6.06 -932.44 -5.65 -20.59 16 15 C 0.02 0.73 5.31 85.56 0.45 1.19 16 16 C 0.44 21.38 7.62 87.66 0.67 22.05 16 17 O -0.62 -34.66 15.34 -3.07 -0.05 -34.71 16 18 N -0.57 -30.05 5.29 -306.98 -1.62 -31.68 16 19 C -0.33 -19.10 9.68 84.04 0.81 -18.29 16 20 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 21 C -0.01 -0.81 5.50 84.92 0.47 -0.34 16 22 N -0.92 -50.21 13.05 21.66 0.28 -49.93 16 23 Si 0.99 43.30 29.55 68.60 2.03 45.33 16 24 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 26 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 27 C 0.01 0.37 6.28 83.57 0.53 0.89 16 28 H 0.03 0.56 7.22 -2.38 -0.02 0.54 16 29 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.75 6.43 -2.39 -0.02 0.74 16 31 H 0.08 0.64 7.56 -2.39 -0.02 0.62 16 32 H 0.10 0.65 6.43 -2.39 -0.02 0.63 16 33 H 0.10 0.86 6.43 -2.39 -0.02 0.84 16 34 H 0.07 0.85 7.57 -2.39 -0.02 0.83 16 35 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.03 0.63 7.22 -2.38 -0.02 0.61 16 37 H 0.06 1.01 6.43 -2.39 -0.02 1.00 16 38 H 0.05 1.01 6.39 -2.39 -0.02 1.00 16 39 H 0.06 1.05 6.39 -2.38 -0.02 1.04 16 40 H 0.07 0.54 6.43 -2.38 -0.02 0.52 16 41 H 0.07 0.58 6.43 -2.39 -0.02 0.56 16 42 H 0.06 0.56 8.14 -2.39 -0.02 0.55 16 43 H 0.41 5.53 7.31 -92.71 -0.68 4.85 16 44 H 0.05 1.22 7.81 -2.38 -0.02 1.20 16 45 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 47 H 0.08 1.59 7.73 -2.39 -0.02 1.57 16 48 H 0.11 1.91 8.14 -2.38 -0.02 1.89 16 49 H 0.07 2.33 7.56 -2.39 -0.02 2.31 16 50 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 51 H 0.40 19.66 7.90 -92.71 -0.73 18.93 16 52 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 53 H 0.07 2.25 8.13 -2.39 -0.02 2.23 16 54 H 0.06 1.77 7.43 -2.39 -0.02 1.75 16 Total: -1.00 -74.58 415.18 -1.33 -75.91 By element: Atomic # 1 Polarization: 39.05 SS G_CDS: -0.50 Total: 38.55 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: 6.70 Total: 9.96 kcal Atomic # 7 Polarization: -108.01 SS G_CDS: -9.47 Total: -117.48 kcal Atomic # 8 Polarization: -52.18 SS G_CDS: -0.10 Total: -52.27 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -74.58 -1.33 -75.91 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318166154.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.197 kcal (2) G-P(sol) polarization free energy of solvation -74.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds