Wall clock time and date at job start Sat Apr 11 2020 05:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.46952 * 2 1 4 4 C 1.52997 * 109.46983 * 240.00083 * 2 1 3 5 5 C 1.53001 * 109.47152 * 120.00293 * 2 1 3 6 6 C 1.50695 * 109.47261 * 59.99881 * 5 2 1 7 7 O 1.21286 * 119.99921 * 359.97438 * 6 5 2 8 8 N 1.34773 * 120.00085 * 179.97438 * 6 5 2 9 9 C 1.46500 * 120.00025 * 180.02562 * 8 6 5 10 10 C 1.53009 * 109.47077 * 176.03430 * 9 8 6 11 11 N 1.46898 * 110.01508 * 303.76166 * 10 9 8 12 12 C 1.46898 * 110.99806 * 305.54597 * 11 10 9 13 13 C 1.50695 * 109.46914 * 185.17149 * 12 11 10 14 14 O 1.21296 * 120.00290 * 0.02562 * 13 12 11 15 15 N 1.34778 * 120.00208 * 180.02562 * 13 12 11 16 16 C 1.37100 * 120.00252 * 180.02562 * 15 13 12 17 17 H 1.08001 * 119.99886 * 359.97438 * 16 15 13 18 18 C 1.38953 * 119.99902 * 180.02562 * 16 15 13 19 19 N 1.31411 * 119.99966 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99944 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46962 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.46931 * 119.99826 * 20 18 16 23 23 H 1.48500 * 109.47062 * 240.00116 * 20 18 16 24 24 C 1.54263 * 110.02930 * 182.31402 * 10 9 8 25 25 C 1.54887 * 104.19615 * 217.10415 * 24 10 9 26 26 C 1.54892 * 102.75013 * 37.94767 * 25 24 10 27 27 C 1.53882 * 110.03099 * 65.15077 * 10 9 8 28 28 H 1.09001 * 109.46647 * 299.99759 * 1 2 3 29 29 H 1.08999 * 109.47068 * 59.99789 * 1 2 3 30 30 H 1.08998 * 109.46794 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47032 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47406 * 300.00004 * 3 2 1 33 33 H 1.09001 * 109.47248 * 60.00609 * 3 2 1 34 34 H 1.09000 * 109.47247 * 300.00289 * 4 2 1 35 35 H 1.09011 * 109.47046 * 59.99732 * 4 2 1 36 36 H 1.08993 * 109.47348 * 179.97438 * 4 2 1 37 37 H 1.08998 * 109.46693 * 299.99971 * 5 2 1 38 38 H 1.09004 * 109.47057 * 180.02562 * 5 2 1 39 39 H 0.97003 * 120.00144 * 359.97438 * 8 6 5 40 40 H 1.08992 * 109.47583 * 56.03299 * 9 8 6 41 41 H 1.09007 * 109.46845 * 296.03008 * 9 8 6 42 42 H 1.00896 * 111.00361 * 69.50588 * 11 10 9 43 43 H 1.08994 * 109.47559 * 305.17352 * 12 11 10 44 44 H 1.09006 * 109.46908 * 65.17333 * 12 11 10 45 45 H 0.97001 * 119.99877 * 0.02562 * 15 13 12 46 46 H 0.97007 * 119.99667 * 180.02562 * 19 18 16 47 47 H 1.08995 * 110.49367 * 335.78490 * 24 10 9 48 48 H 1.09007 * 110.48049 * 98.43043 * 24 10 9 49 49 H 1.09008 * 110.75970 * 279.63544 * 25 24 10 50 50 H 1.09004 * 110.75773 * 156.26357 * 25 24 10 51 51 H 1.09002 * 110.48752 * 203.38225 * 26 25 24 52 52 H 1.09001 * 110.48395 * 80.73526 * 26 25 24 53 53 H 1.08991 * 110.03244 * 238.56899 * 27 10 9 54 54 H 1.09003 * 110.02934 * 0.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0401 -0.7213 1.2492 6 6 1.5378 -2.1421 1.2492 7 8 0.8401 -2.5386 0.3398 8 7 1.8638 -2.9721 2.2597 9 6 1.3759 -4.3535 2.2594 10 6 1.9662 -5.1032 3.4555 11 7 3.4330 -5.0320 3.4194 12 6 3.9520 -5.5149 2.1328 13 6 5.4579 -5.5468 2.1787 14 8 6.0415 -5.2017 3.1844 15 7 6.1564 -5.9588 1.1022 16 6 7.5264 -5.9884 1.1441 17 1 8.0460 -5.6810 2.0396 18 6 8.2464 -6.4127 0.0340 19 7 7.6142 -6.7852 -1.0561 20 14 10.1132 -6.4522 0.0909 21 1 10.5778 -5.9855 1.4219 22 1 10.5861 -7.8408 -0.1402 23 1 10.6595 -5.5611 -0.9640 24 6 1.5068 -6.5756 3.4352 25 6 1.2898 -6.9264 4.9282 26 6 0.6811 -5.6222 5.5008 27 6 1.4412 -4.4969 4.7688 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2493 35 1 1.6766 -0.2073 -2.1393 36 1 3.1300 -0.7209 -1.2495 37 1 1.6767 -0.2075 2.1392 38 1 3.1301 -0.7209 1.2494 39 1 2.4221 -2.6551 2.9868 40 1 1.6800 -4.8461 1.3359 41 1 0.2882 -4.3546 2.3307 42 1 3.7544 -4.0948 3.6101 43 1 3.5729 -6.5188 1.9418 44 1 3.6268 -4.8461 1.3358 45 1 5.6897 -6.2345 0.2977 46 1 8.1170 -7.0817 -1.8310 47 1 0.5742 -6.6768 2.8802 48 1 2.2801 -7.2106 3.0027 49 1 2.2388 -7.1552 5.4132 50 1 0.5914 -7.7569 5.0324 51 1 0.8519 -5.5614 6.5756 52 1 -0.3848 -5.5694 5.2793 53 1 2.2748 -4.1507 5.3797 54 1 0.7656 -3.6689 4.5540 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319343409.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:45 Heat of formation + Delta-G solvation = -114.553318 kcal Electronic energy + Delta-G solvation = -31209.690768 eV Core-core repulsion = 27179.479767 eV Total energy + Delta-G solvation = -4030.211001 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 4.04 seconds Orbital eigenvalues (eV) -41.50377 -40.48273 -39.61174 -37.47950 -36.06570 -35.63668 -34.53411 -33.24721 -30.79890 -29.72085 -29.11145 -28.11528 -28.03155 -27.74989 -26.05422 -24.93725 -22.16419 -21.33896 -20.85509 -20.26139 -19.88437 -19.70461 -18.31353 -17.89272 -17.14235 -16.77941 -16.74477 -16.35075 -16.09593 -15.88321 -15.78404 -15.31686 -15.26966 -15.22074 -15.13021 -14.59541 -14.22660 -13.94733 -13.92855 -13.70540 -13.52389 -13.16293 -12.97149 -12.95737 -12.80888 -12.67894 -12.42321 -12.32572 -12.24900 -12.17177 -12.08553 -12.01937 -11.90517 -11.79650 -11.66327 -11.62569 -11.54676 -11.51276 -11.33751 -10.47530 -10.34868 -10.05835 -10.02162 -9.35545 -8.47256 -5.96269 1.35743 1.40890 1.55235 1.66994 2.03906 2.18043 2.28558 2.87930 3.19730 3.45661 3.59086 3.64234 3.72301 3.88092 3.89576 3.92741 4.22518 4.25609 4.31431 4.37606 4.39109 4.48586 4.57898 4.58540 4.63268 4.63785 4.65341 4.75566 4.82729 4.85606 4.85924 4.94366 4.97346 5.02949 5.07754 5.11500 5.14797 5.16163 5.19824 5.28391 5.33355 5.35304 5.40286 5.42814 5.52148 5.58097 5.67634 5.89742 6.09843 6.40720 6.51376 6.58481 7.11806 7.28546 7.55080 8.09820 8.70416 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.007308 B = 0.003666 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3830.381781 B = 7635.057233 C =10633.581234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.051 4.051 3 C -0.138 4.138 4 C -0.154 4.154 5 C -0.132 4.132 6 C 0.509 3.491 7 O -0.562 6.562 8 N -0.723 5.723 9 C 0.098 3.902 10 C 0.107 3.893 11 N -0.652 5.652 12 C 0.065 3.935 13 C 0.441 3.559 14 O -0.617 6.617 15 N -0.575 5.575 16 C -0.331 4.331 17 H 0.081 0.919 18 C -0.014 4.014 19 N -0.922 5.922 20 Si 0.993 3.007 21 H -0.271 1.271 22 H -0.271 1.271 23 H -0.271 1.271 24 C -0.114 4.114 25 C -0.116 4.116 26 C -0.114 4.114 27 C -0.112 4.112 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.043 0.957 37 H 0.119 0.881 38 H 0.098 0.902 39 H 0.406 0.594 40 H 0.051 0.949 41 H 0.076 0.924 42 H 0.343 0.657 43 H 0.099 0.901 44 H 0.054 0.946 45 H 0.393 0.607 46 H 0.277 0.723 47 H 0.083 0.917 48 H 0.058 0.942 49 H 0.054 0.946 50 H 0.077 0.923 51 H 0.072 0.928 52 H 0.077 0.923 53 H 0.072 0.928 54 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.807 10.709 6.948 21.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.052 4.052 3 C -0.195 4.195 4 C -0.211 4.211 5 C -0.172 4.172 6 C 0.298 3.702 7 O -0.442 6.442 8 N -0.376 5.376 9 C -0.028 4.028 10 C 0.016 3.984 11 N -0.285 5.285 12 C -0.067 4.067 13 C 0.229 3.771 14 O -0.503 6.503 15 N -0.212 5.212 16 C -0.461 4.461 17 H 0.099 0.901 18 C -0.213 4.213 19 N -0.563 5.563 20 Si 0.816 3.184 21 H -0.196 1.196 22 H -0.197 1.197 23 H -0.197 1.197 24 C -0.153 4.153 25 C -0.154 4.154 26 C -0.152 4.152 27 C -0.149 4.149 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.137 0.863 38 H 0.117 0.883 39 H 0.242 0.758 40 H 0.070 0.930 41 H 0.094 0.906 42 H 0.163 0.837 43 H 0.117 0.883 44 H 0.071 0.929 45 H 0.227 0.773 46 H 0.086 0.914 47 H 0.102 0.898 48 H 0.077 0.923 49 H 0.073 0.927 50 H 0.095 0.905 51 H 0.090 0.910 52 H 0.096 0.904 53 H 0.091 0.909 54 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -17.747 9.986 7.118 21.572 hybrid contribution 1.014 0.349 -1.146 1.569 sum -16.733 10.335 5.972 20.554 Atomic orbital electron populations 1.22026 0.94295 1.02651 1.01471 1.20277 0.96144 0.95419 0.93324 1.21859 1.01090 0.93956 1.02640 1.22085 0.99929 1.01622 0.97490 1.21861 1.02911 0.91048 1.01375 1.21151 0.79495 0.88691 0.80880 1.90583 1.39261 1.78066 1.36267 1.46015 1.53825 1.12047 1.25717 1.22078 0.99574 0.81879 0.99270 1.22004 0.85836 0.96244 0.94312 1.60319 1.07741 1.30046 1.30356 1.21499 0.90639 1.02219 0.92335 1.20785 0.90388 0.82421 0.83539 1.90487 1.72397 1.54190 1.33248 1.41959 1.06639 1.58461 1.14150 1.19708 0.82552 1.43268 1.00565 0.90140 1.26052 1.04980 0.96049 0.94238 1.69694 1.38170 1.44450 1.04011 0.84875 0.76857 0.78299 0.78343 1.19563 1.19673 1.19667 1.22451 1.00999 0.93395 0.98418 1.22391 1.00555 0.98129 0.94326 1.22285 0.99609 0.93467 0.99826 1.22258 1.00100 0.98682 0.93910 0.92197 0.92958 0.92178 0.92509 0.92215 0.91197 0.92355 0.92728 0.93806 0.86340 0.88338 0.75756 0.93036 0.90597 0.83662 0.88348 0.92862 0.77346 0.91378 0.89804 0.92306 0.92699 0.90479 0.90973 0.90433 0.90938 0.90120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 8.18 71.98 0.59 -2.28 16 2 C -0.05 -0.98 0.77 -52.18 -0.04 -1.02 16 3 C -0.14 -2.05 8.47 71.98 0.61 -1.44 16 4 C -0.15 -3.70 8.18 71.98 0.59 -3.11 16 5 C -0.13 -2.34 4.77 29.85 0.14 -2.20 16 6 C 0.51 11.84 7.24 87.66 0.63 12.48 16 7 O -0.56 -16.83 11.35 -3.05 -0.03 -16.87 16 8 N -0.72 -14.69 5.06 -463.05 -2.34 -17.04 16 9 C 0.10 2.14 3.56 86.38 0.31 2.44 16 10 C 0.11 2.28 0.55 4.26 0.00 2.28 16 11 N -0.65 -18.80 5.47 -470.56 -2.58 -21.38 16 12 C 0.07 2.26 5.28 85.56 0.45 2.71 16 13 C 0.44 20.94 7.83 87.66 0.69 21.63 16 14 O -0.62 -33.53 15.89 -3.08 -0.05 -33.58 16 15 N -0.57 -29.90 5.29 -306.98 -1.62 -31.53 16 16 C -0.33 -18.94 9.68 84.04 0.81 -18.12 16 17 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 18 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 19 N -0.92 -50.62 13.05 21.66 0.28 -50.34 16 20 Si 0.99 43.22 29.55 68.60 2.03 45.25 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 23 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 24 C -0.11 -2.40 5.83 31.67 0.18 -2.22 16 25 C -0.12 -2.19 6.91 31.89 0.22 -1.97 16 26 C -0.11 -1.75 6.83 31.67 0.22 -1.53 16 27 C -0.11 -1.89 5.74 31.32 0.18 -1.71 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 1.49 5.51 -2.39 -0.01 1.48 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 1.72 5.51 -2.39 -0.01 1.71 16 35 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.41 6.90 7.17 -92.71 -0.66 6.24 16 40 H 0.05 1.37 6.73 -2.39 -0.02 1.35 16 41 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 42 H 0.34 9.87 7.34 -89.70 -0.66 9.21 16 43 H 0.10 3.22 6.24 -2.39 -0.01 3.21 16 44 H 0.05 1.78 6.66 -2.38 -0.02 1.77 16 45 H 0.39 19.84 7.90 -92.71 -0.73 19.11 16 46 H 0.28 14.21 8.31 -92.70 -0.77 13.44 16 47 H 0.08 1.50 7.85 -2.39 -0.02 1.48 16 48 H 0.06 1.48 6.18 -2.38 -0.01 1.46 16 49 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 50 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 51 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 52 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 53 H 0.07 1.34 7.85 -2.39 -0.02 1.32 16 54 H 0.08 1.14 7.54 -2.39 -0.02 1.12 16 Total: -1.00 -69.37 414.23 0.60 -68.77 By element: Atomic # 1 Polarization: 52.17 SS G_CDS: -1.14 Total: 51.02 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: 6.05 Total: 5.68 kcal Atomic # 7 Polarization: -114.02 SS G_CDS: -6.26 Total: -120.28 kcal Atomic # 8 Polarization: -50.36 SS G_CDS: -0.08 Total: -50.45 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -69.37 0.60 -68.77 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319343409.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.780 kcal (2) G-P(sol) polarization free energy of solvation -69.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.04 seconds