Wall clock time and date at job start Sat Apr 11 2020 05:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47307 * 2 1 4 4 C 1.52997 * 109.46803 * 65.00351 * 3 2 1 5 5 C 1.53002 * 109.47136 * 185.43333 * 4 3 2 6 6 C 1.50693 * 109.46983 * 185.00344 * 3 2 1 7 7 O 1.21276 * 120.00075 * 273.98188 * 6 3 2 8 8 N 1.34772 * 120.00153 * 93.99237 * 6 3 2 9 9 C 1.46934 * 120.62857 * 354.75857 * 8 6 3 10 10 C 1.53194 * 108.77326 * 126.41594 * 9 8 6 11 11 C 1.53046 * 109.31435 * 54.63746 * 10 9 8 12 12 H 1.08994 * 109.46007 * 58.64865 * 11 10 9 13 13 N 1.46897 * 109.46209 * 178.61342 * 11 10 9 14 14 C 1.46899 * 110.99752 * 275.06955 * 13 11 10 15 15 C 1.50705 * 109.46789 * 180.02562 * 14 13 11 16 16 O 1.21290 * 120.00164 * 359.97438 * 15 14 13 17 17 N 1.34777 * 119.99780 * 179.97438 * 15 14 13 18 18 C 1.37096 * 119.99913 * 179.97438 * 17 15 14 19 19 H 1.08001 * 120.00203 * 359.97438 * 18 17 15 20 20 C 1.38945 * 120.00249 * 180.02562 * 18 17 15 21 21 N 1.31416 * 119.99795 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00286 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47048 * 59.99953 * 22 20 18 24 24 H 1.48507 * 109.47400 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.47023 * 299.99587 * 22 20 18 26 26 C 1.53040 * 109.53400 * 298.63249 * 11 10 9 27 27 H 1.09005 * 109.52483 * 181.32918 * 26 11 10 28 28 C 1.53001 * 109.49889 * 301.41358 * 26 11 10 29 29 C 1.46923 * 120.63432 * 174.78551 * 8 6 3 30 30 H 1.09003 * 109.47111 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47013 * 299.99347 * 1 2 3 32 32 H 1.08999 * 109.47606 * 59.99425 * 1 2 3 33 33 H 1.09004 * 109.47013 * 240.00653 * 2 1 3 34 34 H 1.08999 * 109.47606 * 120.00575 * 2 1 3 35 35 H 1.09004 * 109.46792 * 305.00838 * 3 2 1 36 36 H 1.09004 * 109.47157 * 305.43382 * 4 3 2 37 37 H 1.08997 * 109.47527 * 65.43236 * 4 3 2 38 38 H 1.08998 * 109.46967 * 294.97854 * 5 4 3 39 39 H 1.09000 * 109.46965 * 54.98031 * 5 4 3 40 40 H 1.09002 * 109.46659 * 174.97448 * 5 4 3 41 41 H 1.09002 * 109.58551 * 246.20202 * 9 8 6 42 42 H 1.08998 * 109.58541 * 6.63059 * 9 8 6 43 43 H 1.08999 * 109.49750 * 174.58866 * 10 9 8 44 44 H 1.09000 * 109.49767 * 294.65422 * 10 9 8 45 45 H 1.00902 * 111.00371 * 151.10904 * 13 11 10 46 46 H 1.08997 * 109.46866 * 299.99105 * 14 13 11 47 47 H 1.08992 * 109.47590 * 59.99840 * 14 13 11 48 48 H 0.96992 * 120.00021 * 359.97438 * 17 15 14 49 49 H 0.97001 * 119.99791 * 180.02562 * 21 20 18 50 50 H 1.09005 * 109.47157 * 179.84285 * 28 26 11 51 51 H 1.09001 * 109.47089 * 299.83912 * 28 26 11 52 52 H 1.08993 * 109.46936 * 59.84373 * 28 26 11 53 53 H 1.09003 * 109.59018 * 113.79743 * 29 8 6 54 54 H 1.08999 * 109.70251 * 353.44006 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6353 2.1265 1.3074 5 6 2.0258 3.6048 1.2517 6 6 3.5419 1.4442 -0.1239 7 8 4.2323 1.3416 0.8679 8 7 4.1178 1.5601 -1.3368 9 6 3.2987 1.5703 -2.5566 10 6 3.6474 2.8180 -3.3742 11 6 5.1560 2.8504 -3.6299 12 1 5.4536 1.9467 -4.1617 13 7 5.4897 4.0281 -4.4420 14 6 5.3151 3.7472 -5.8733 15 6 5.6665 4.9755 -6.6727 16 8 6.0264 5.9856 -6.1059 17 7 5.5808 4.9515 -8.0175 18 6 5.8999 6.0690 -8.7447 19 1 6.2196 6.9687 -8.2400 20 6 5.8110 6.0445 -10.1311 21 7 5.4215 4.9500 -10.7453 22 14 6.2452 7.5674 -11.1220 23 1 7.6579 7.9425 -10.8596 24 1 6.0696 7.2833 -12.5690 25 1 5.3538 8.6869 -10.7251 26 6 5.8999 2.9245 -2.2945 27 1 6.9734 2.9713 -2.4776 28 6 5.4569 4.1747 -1.5319 29 6 5.5767 1.6780 -1.4647 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.6053 1.9816 -0.8418 36 1 0.5573 2.0402 1.4440 37 1 2.1468 1.6468 2.1419 38 1 3.1112 3.6924 1.2048 39 1 1.5856 4.0637 0.3664 40 1 1.6585 4.1114 2.1442 41 1 3.5087 0.6773 -3.1453 42 1 2.2427 1.5932 -2.2874 43 1 3.1176 2.7889 -4.3263 44 1 3.3526 3.7097 -2.8209 45 1 6.4269 4.3476 -4.2478 46 1 5.9690 2.9253 -6.1646 47 1 4.2781 3.4723 -6.0658 48 1 5.2933 4.1437 -8.4708 49 1 5.3599 4.9328 -11.7132 50 1 5.9849 4.2256 -0.5796 51 1 5.6870 5.0613 -2.1227 52 1 4.3833 4.1278 -1.3499 53 1 5.9725 0.7937 -1.9643 54 1 6.0260 1.7707 -0.4759 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319673656.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:49 Heat of formation + Delta-G solvation = -111.322890 kcal Electronic energy + Delta-G solvation = -30836.016417 eV Core-core repulsion = 26805.945498 eV Total energy + Delta-G solvation = -4030.070919 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.69158 -40.23124 -39.33078 -36.82609 -36.32538 -35.74812 -33.75648 -33.21618 -32.60608 -31.95955 -28.89966 -28.49120 -27.29815 -26.23335 -24.68007 -23.86221 -23.51171 -22.43604 -21.08359 -20.37661 -19.90716 -19.38961 -18.60763 -17.70379 -17.04094 -16.67579 -16.52051 -16.36513 -16.18815 -15.76975 -15.50004 -15.40026 -15.32917 -15.14812 -14.84234 -14.48540 -14.41227 -14.06795 -13.86740 -13.67289 -13.47846 -13.34806 -13.26192 -12.98254 -12.89149 -12.79996 -12.73058 -12.61742 -12.44011 -12.40030 -12.34449 -12.14370 -12.12201 -11.81842 -11.66735 -11.50083 -11.44625 -11.35356 -11.29634 -10.56950 -10.31722 -10.00452 -9.63631 -9.27849 -8.45901 -5.94345 1.40034 1.42044 1.52615 1.64674 2.02643 2.07354 2.29605 2.91661 3.21652 3.44071 3.51411 3.71286 3.75913 3.79960 3.95893 4.02078 4.12496 4.24388 4.27186 4.32841 4.36093 4.47151 4.50113 4.52910 4.55006 4.56429 4.62368 4.65224 4.71502 4.74242 4.78978 4.81994 4.85866 4.95061 4.98858 5.07401 5.08907 5.13822 5.21309 5.23646 5.27246 5.31368 5.38288 5.41461 5.47269 5.49968 5.59532 5.92797 6.15538 6.42144 6.44047 6.61635 7.13873 7.21056 7.58059 8.13706 8.71198 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.020757 B = 0.002077 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.634503 B =13478.710131 C =13852.389009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.109 4.109 3 C -0.107 4.107 4 C -0.107 4.107 5 C -0.154 4.154 6 C 0.519 3.481 7 O -0.585 6.585 8 N -0.606 5.606 9 C 0.106 3.894 10 C -0.124 4.124 11 C 0.096 3.904 12 H 0.058 0.942 13 N -0.674 5.674 14 C 0.067 3.933 15 C 0.438 3.562 16 O -0.624 6.624 17 N -0.574 5.574 18 C -0.333 4.333 19 H 0.077 0.923 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.991 3.009 23 H -0.273 1.273 24 H -0.270 1.270 25 H -0.272 1.272 26 C -0.100 4.100 27 H 0.084 0.916 28 C -0.131 4.131 29 C 0.121 3.879 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.110 0.890 36 H 0.094 0.906 37 H 0.055 0.945 38 H 0.030 0.970 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.089 0.911 42 H 0.110 0.890 43 H 0.081 0.919 44 H 0.065 0.935 45 H 0.343 0.657 46 H 0.065 0.935 47 H 0.106 0.894 48 H 0.397 0.603 49 H 0.278 0.722 50 H 0.044 0.956 51 H 0.051 0.949 52 H 0.052 0.948 53 H 0.081 0.919 54 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.079 -13.920 18.683 25.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.147 4.147 3 C -0.128 4.128 4 C -0.145 4.145 5 C -0.211 4.211 6 C 0.309 3.691 7 O -0.465 6.465 8 N -0.338 5.338 9 C -0.016 4.016 10 C -0.163 4.163 11 C -0.014 4.014 12 H 0.076 0.924 13 N -0.307 5.307 14 C -0.065 4.065 15 C 0.225 3.775 16 O -0.511 6.511 17 N -0.211 5.211 18 C -0.463 4.463 19 H 0.095 0.905 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.815 3.185 23 H -0.198 1.198 24 H -0.195 1.195 25 H -0.198 1.198 26 C -0.119 4.119 27 H 0.103 0.897 28 C -0.188 4.188 29 C -0.002 4.002 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.128 0.872 36 H 0.113 0.887 37 H 0.074 0.926 38 H 0.049 0.951 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.107 0.893 42 H 0.127 0.873 43 H 0.100 0.900 44 H 0.083 0.917 45 H 0.162 0.838 46 H 0.083 0.917 47 H 0.124 0.876 48 H 0.231 0.769 49 H 0.087 0.913 50 H 0.063 0.937 51 H 0.070 0.930 52 H 0.071 0.929 53 H 0.099 0.901 54 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.115 -13.066 19.419 25.498 hybrid contribution 1.282 0.081 -1.078 1.676 sum -8.833 -12.985 18.342 24.147 Atomic orbital electron populations 1.21816 0.93394 1.02630 1.02847 1.21426 0.97699 0.93017 1.02527 1.21584 0.90061 0.99780 1.01390 1.21479 1.02313 0.95010 0.95679 1.21794 1.00284 0.96564 1.02456 1.21132 0.91593 0.74316 0.82049 1.90646 1.66075 1.51769 1.38004 1.48205 1.07337 1.71696 1.06572 1.22041 0.96463 0.98484 0.84606 1.21969 0.95188 0.98311 1.00838 1.21564 0.96179 0.91256 0.92380 0.92431 1.60127 1.33577 1.33785 1.03172 1.21573 1.03112 0.93349 0.88481 1.20943 0.82885 0.91028 0.82618 1.90495 1.53473 1.36224 1.70881 1.41928 1.59722 1.14217 1.05238 1.19603 1.44055 0.93188 0.89462 0.90472 1.26008 0.96688 1.01254 0.97283 1.69661 1.47270 1.28461 1.10666 0.85020 0.78776 0.77651 0.77088 1.19794 1.19468 1.19775 1.21603 1.00280 0.95457 0.94596 0.89733 1.21652 1.01050 0.97299 0.98822 1.21558 0.80658 0.97266 1.00728 0.91804 0.91946 0.91467 0.91009 0.92529 0.87190 0.88728 0.92643 0.95094 0.91969 0.91791 0.89313 0.87251 0.90006 0.91653 0.83807 0.91716 0.87623 0.76943 0.91305 0.93734 0.92986 0.92902 0.90069 0.90492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.67 71.98 0.70 -0.48 16 2 C -0.11 -1.25 5.38 30.60 0.16 -1.09 16 3 C -0.11 -1.53 1.48 -11.54 -0.02 -1.55 16 4 C -0.11 -1.62 5.03 30.59 0.15 -1.47 16 5 C -0.15 -2.61 9.65 71.98 0.69 -1.92 16 6 C 0.52 10.78 5.85 87.66 0.51 11.29 16 7 O -0.58 -16.92 15.35 -3.02 -0.05 -16.97 16 8 N -0.61 -10.75 2.41 -818.90 -1.97 -12.72 16 9 C 0.11 1.38 6.31 86.36 0.54 1.92 16 10 C -0.12 -2.21 5.25 30.67 0.16 -2.05 16 11 C 0.10 1.98 2.15 44.94 0.10 2.08 16 12 H 0.06 1.07 7.80 -2.39 -0.02 1.05 16 13 N -0.67 -19.69 5.25 -495.45 -2.60 -22.29 16 14 C 0.07 2.15 5.96 85.56 0.51 2.66 16 15 C 0.44 20.29 7.82 87.66 0.69 20.97 16 16 O -0.62 -34.18 15.78 -3.06 -0.05 -34.23 16 17 N -0.57 -28.89 5.29 -306.98 -1.62 -30.51 16 18 C -0.33 -18.78 9.68 84.04 0.81 -17.96 16 19 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 20 C -0.01 -0.66 5.50 84.92 0.47 -0.20 16 21 N -0.92 -48.99 13.05 21.66 0.28 -48.71 16 22 Si 0.99 42.62 29.55 68.60 2.03 44.65 16 23 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 24 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 26 C -0.10 -2.01 2.59 -10.71 -0.03 -2.03 16 27 H 0.08 1.65 8.10 -2.38 -0.02 1.63 16 28 C -0.13 -3.08 8.56 71.98 0.62 -2.47 16 29 C 0.12 2.29 5.81 86.36 0.50 2.79 16 30 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.06 0.47 6.45 -2.38 -0.02 0.45 16 32 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 35 H 0.11 1.21 5.97 -2.39 -0.01 1.19 16 36 H 0.09 1.00 6.33 -2.38 -0.02 0.99 16 37 H 0.05 1.06 7.66 -2.39 -0.02 1.04 16 38 H 0.03 0.68 7.37 -2.39 -0.02 0.66 16 39 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.11 1.00 5.35 -2.39 -0.01 0.99 16 43 H 0.08 1.41 7.42 -2.39 -0.02 1.40 16 44 H 0.06 1.39 6.33 -2.39 -0.02 1.37 16 45 H 0.34 10.91 7.96 -89.69 -0.71 10.20 16 46 H 0.07 1.81 8.05 -2.39 -0.02 1.79 16 47 H 0.11 2.98 7.41 -2.39 -0.02 2.96 16 48 H 0.40 18.84 7.90 -92.71 -0.73 18.11 16 49 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 50 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 51 H 0.05 1.42 7.59 -2.39 -0.02 1.40 16 52 H 0.05 1.26 5.97 -2.39 -0.01 1.25 16 53 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 54 H 0.08 1.74 7.05 -2.39 -0.02 1.73 16 Total: -1.00 -71.03 414.14 2.05 -68.98 By element: Atomic # 1 Polarization: 41.83 SS G_CDS: -0.54 Total: 41.29 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 6.57 Total: 10.50 kcal Atomic # 7 Polarization: -108.32 SS G_CDS: -5.92 Total: -114.23 kcal Atomic # 8 Polarization: -51.10 SS G_CDS: -0.09 Total: -51.19 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -71.03 2.05 -68.98 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319673656.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.341 kcal (2) G-P(sol) polarization free energy of solvation -71.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds