Wall clock time and date at job start Sat Apr 11 2020 05:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46836 * 2 1 4 4 C 1.53002 * 109.47083 * 304.66517 * 3 2 1 5 5 C 1.52989 * 109.47056 * 295.37931 * 4 3 2 6 6 C 1.50698 * 109.47240 * 64.67064 * 3 2 1 7 7 O 1.21281 * 119.99913 * 255.32999 * 6 3 2 8 8 N 1.34781 * 120.00385 * 75.32759 * 6 3 2 9 9 C 1.46928 * 120.62742 * 354.17349 * 8 6 3 10 10 C 1.53191 * 108.77072 * 233.58229 * 9 8 6 11 11 C 1.53043 * 109.31400 * 305.36453 * 10 9 8 12 12 H 1.08991 * 109.46073 * 301.35979 * 11 10 9 13 13 N 1.46901 * 109.45837 * 181.38563 * 11 10 9 14 14 C 1.46897 * 110.99708 * 85.00183 * 13 11 10 15 15 C 1.50708 * 109.47083 * 179.97438 * 14 13 11 16 16 O 1.21292 * 119.99797 * 0.02562 * 15 14 13 17 17 N 1.34778 * 120.00195 * 179.97438 * 15 14 13 18 18 C 1.37092 * 119.99793 * 180.02562 * 17 15 14 19 19 H 1.07995 * 120.00339 * 359.97438 * 18 17 15 20 20 C 1.38952 * 119.99717 * 180.02562 * 18 17 15 21 21 N 1.31407 * 119.99978 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99948 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47044 * 90.00171 * 22 20 18 24 24 H 1.48506 * 109.46813 * 209.99849 * 22 20 18 25 25 H 1.48499 * 109.47288 * 330.00162 * 22 20 18 26 26 C 1.53046 * 109.53743 * 61.36854 * 11 10 9 27 27 H 1.09002 * 109.49692 * 58.58370 * 26 11 10 28 28 C 1.52997 * 109.49412 * 178.68439 * 26 11 10 29 29 C 1.46920 * 120.63128 * 174.14237 * 8 6 3 30 30 H 1.08999 * 109.47302 * 305.61074 * 1 2 3 31 31 H 1.09006 * 109.47003 * 65.61167 * 1 2 3 32 32 H 1.08998 * 109.47107 * 185.60825 * 1 2 3 33 33 H 1.09002 * 109.47316 * 240.00068 * 2 1 3 34 34 H 1.08999 * 109.47155 * 119.99567 * 2 1 3 35 35 H 1.09004 * 109.46725 * 184.66622 * 3 2 1 36 36 H 1.09000 * 109.46751 * 55.38259 * 4 3 2 37 37 H 1.09001 * 109.46534 * 175.37826 * 4 3 2 38 38 H 1.09001 * 109.46954 * 185.17290 * 5 4 3 39 39 H 1.09000 * 109.47464 * 305.17551 * 5 4 3 40 40 H 1.09004 * 109.47545 * 65.17912 * 5 4 3 41 41 H 1.08993 * 109.58478 * 113.79433 * 9 8 6 42 42 H 1.08998 * 109.70310 * 353.44035 * 9 8 6 43 43 H 1.09005 * 109.49554 * 185.41129 * 10 9 8 44 44 H 1.08998 * 109.52417 * 65.33444 * 10 9 8 45 45 H 1.00896 * 111.00224 * 321.04801 * 13 11 10 46 46 H 1.08998 * 109.47411 * 299.99608 * 14 13 11 47 47 H 1.08997 * 109.47303 * 60.00131 * 14 13 11 48 48 H 0.97006 * 119.99544 * 0.02562 * 17 15 14 49 49 H 0.96999 * 119.99813 * 179.97438 * 21 20 18 50 50 H 1.08999 * 109.47175 * 60.00055 * 28 26 11 51 51 H 1.09003 * 109.46523 * 179.97438 * 28 26 11 52 52 H 1.08997 * 109.47317 * 299.99451 * 28 26 11 53 53 H 1.08991 * 109.58972 * 246.20719 * 29 8 6 54 54 H 1.09007 * 109.59007 * 6.49289 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.4363 2.1968 -1.1865 5 6 1.9410 1.5805 -2.4926 6 6 1.6343 2.1188 1.2842 7 8 0.7245 2.9208 1.2861 8 7 2.2824 1.8323 2.4307 9 6 3.2992 0.7725 2.4710 10 6 2.9444 -0.2086 3.5928 11 6 2.7856 0.5604 4.9064 12 1 3.7130 1.0858 5.1340 13 7 2.4779 -0.3816 5.9908 14 6 3.7069 -0.9594 6.5507 15 6 3.3522 -1.9179 7.6582 16 8 2.1898 -2.1020 7.9518 17 7 4.3265 -2.5714 8.3217 18 6 4.0037 -3.4438 9.3288 19 1 2.9688 -3.6070 9.5908 20 6 5.0081 -4.1171 10.0132 21 7 4.6988 -4.9529 10.9789 22 14 6.7983 -3.8342 9.5605 23 1 7.3419 -2.7129 10.3683 24 1 7.5793 -5.0669 9.8360 25 1 6.8968 -3.4978 8.1174 26 6 1.6459 1.5731 4.7720 27 1 0.7230 1.0508 4.5199 28 6 1.4665 2.3184 6.0961 29 6 1.9861 2.5744 3.6636 30 1 -0.3634 0.5984 0.8355 31 1 -0.3633 0.4244 -0.9360 32 1 -0.3633 -1.0227 0.1004 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.1268 1.4437 -0.0836 36 1 0.3494 2.1257 -1.1472 37 1 1.7338 3.2445 -1.1402 38 1 1.5853 2.1734 -3.3353 39 1 3.0309 1.5682 -2.4914 40 1 1.5662 0.5608 -2.5819 41 1 4.2775 1.2119 2.6657 42 1 3.3187 0.2454 1.5171 43 1 3.7406 -0.9458 3.6967 44 1 2.0094 -0.7145 3.3520 45 1 1.8499 -1.1050 5.6741 46 1 4.2474 -1.4918 5.7681 47 1 4.3350 -0.1621 6.9480 48 1 5.2561 -2.4245 8.0866 49 1 5.4000 -5.4232 11.4564 50 1 2.3894 2.8415 6.3466 51 1 0.6550 3.0398 5.9998 52 1 1.2273 1.6053 6.8850 53 1 2.8573 3.1607 3.9555 54 1 1.1382 3.2385 3.4956 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319673657.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:06 Heat of formation + Delta-G solvation = -109.219592 kcal Electronic energy + Delta-G solvation = -30796.591472 eV Core-core repulsion = 26766.611758 eV Total energy + Delta-G solvation = -4029.979713 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.67299 -40.35685 -39.29797 -37.09603 -36.35141 -35.80085 -34.10597 -33.71338 -32.05681 -31.96284 -29.08266 -28.57780 -27.05532 -26.10960 -24.60684 -24.23494 -23.24353 -22.01166 -21.39061 -20.98510 -20.18159 -19.48667 -18.11829 -17.66489 -17.17059 -16.99843 -16.70765 -16.46519 -16.05961 -15.94669 -15.71026 -15.34366 -15.20054 -14.97144 -14.60616 -14.45245 -14.26707 -14.15956 -13.90465 -13.81289 -13.65504 -13.41137 -13.29859 -13.07821 -12.91704 -12.82978 -12.73375 -12.61468 -12.39571 -12.37953 -12.25522 -12.02647 -11.96727 -11.92396 -11.71387 -11.51619 -11.49549 -11.41918 -11.39639 -10.60229 -10.40575 -10.23285 -9.67019 -9.19051 -8.39840 -6.00880 1.31040 1.37684 1.46291 1.62595 1.98692 2.01677 2.24731 2.74267 3.16689 3.40414 3.46223 3.68350 3.77863 3.88933 3.91169 4.01276 4.07726 4.20689 4.26618 4.31268 4.33602 4.43442 4.45809 4.47249 4.54460 4.58094 4.58923 4.70146 4.72097 4.76138 4.76962 4.81627 4.86846 4.90845 4.99478 5.02648 5.13013 5.18485 5.21171 5.24689 5.27727 5.33760 5.36257 5.45483 5.54581 5.55015 5.62984 5.93715 6.12609 6.39302 6.43899 6.61708 6.90250 7.18926 7.42045 7.99584 8.77923 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.019017 B = 0.002199 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.004440 B =12730.256186 C =13273.124910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.115 4.115 3 C -0.102 4.102 4 C -0.107 4.107 5 C -0.147 4.147 6 C 0.514 3.486 7 O -0.586 6.586 8 N -0.611 5.611 9 C 0.105 3.895 10 C -0.163 4.163 11 C 0.097 3.903 12 H 0.096 0.904 13 N -0.678 5.678 14 C 0.065 3.935 15 C 0.448 3.552 16 O -0.617 6.617 17 N -0.591 5.591 18 C -0.328 4.328 19 H 0.052 0.948 20 C -0.018 4.018 21 N -0.936 5.936 22 Si 0.967 3.033 23 H -0.258 1.258 24 H -0.277 1.277 25 H -0.227 1.227 26 C -0.082 4.082 27 H 0.050 0.950 28 C -0.132 4.132 29 C 0.120 3.880 30 H 0.027 0.973 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.100 0.900 34 H 0.075 0.925 35 H 0.119 0.881 36 H 0.057 0.943 37 H 0.051 0.949 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.093 0.907 42 H 0.110 0.890 43 H 0.093 0.907 44 H 0.059 0.941 45 H 0.341 0.659 46 H 0.081 0.919 47 H 0.114 0.886 48 H 0.390 0.610 49 H 0.278 0.722 50 H 0.062 0.938 51 H 0.049 0.951 52 H 0.051 0.949 53 H 0.085 0.915 54 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.918 14.517 -28.312 32.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.153 4.153 3 C -0.123 4.123 4 C -0.145 4.145 5 C -0.204 4.204 6 C 0.305 3.695 7 O -0.466 6.466 8 N -0.343 5.343 9 C -0.017 4.017 10 C -0.203 4.203 11 C -0.013 4.013 12 H 0.114 0.886 13 N -0.308 5.308 14 C -0.067 4.067 15 C 0.236 3.764 16 O -0.501 6.501 17 N -0.233 5.233 18 C -0.457 4.457 19 H 0.071 0.929 20 C -0.217 4.217 21 N -0.577 5.577 22 Si 0.787 3.213 23 H -0.183 1.183 24 H -0.202 1.202 25 H -0.150 1.150 26 C -0.102 4.102 27 H 0.068 0.932 28 C -0.190 4.190 29 C -0.003 4.003 30 H 0.046 0.954 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.119 0.881 34 H 0.094 0.906 35 H 0.137 0.863 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.111 0.889 42 H 0.128 0.872 43 H 0.112 0.888 44 H 0.078 0.922 45 H 0.160 0.840 46 H 0.099 0.901 47 H 0.132 0.868 48 H 0.226 0.774 49 H 0.088 0.912 50 H 0.081 0.919 51 H 0.068 0.932 52 H 0.070 0.930 53 H 0.103 0.897 54 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.676 15.156 -27.455 31.575 hybrid contribution 0.432 -0.894 0.197 1.012 sum 4.108 14.262 -27.259 31.037 Atomic orbital electron populations 1.21838 0.96568 1.01496 1.01417 1.21665 0.95792 0.93487 1.04335 1.21496 1.03197 0.96613 0.91033 1.21367 1.00688 0.98667 0.93760 1.21788 1.01830 1.01253 0.95578 1.21290 0.80783 0.81350 0.86125 1.90660 1.31129 1.37982 1.86875 1.48253 1.40175 1.36921 1.08961 1.22028 0.91218 0.87824 1.00614 1.22672 1.02998 0.98987 0.95642 1.21662 0.98558 0.92908 0.88131 0.88562 1.60107 1.13630 1.21851 1.35259 1.21654 0.93418 0.96897 0.94763 1.21097 0.85252 0.84045 0.86033 1.90555 1.21405 1.68177 1.69961 1.42027 1.08350 1.40111 1.32813 1.18985 0.94849 1.20164 1.11723 0.92943 1.26170 1.04877 0.95266 0.95366 1.69814 1.36039 1.28343 1.23495 0.85338 0.76059 0.79032 0.80889 1.18277 1.20196 1.14997 1.21312 0.98080 0.95793 0.95060 0.93192 1.21571 1.01527 0.99501 0.96382 1.21629 1.01950 0.93885 0.82882 0.95393 0.91886 0.91994 0.88141 0.90637 0.86349 0.92462 0.93050 0.92423 0.91425 0.91635 0.88911 0.87157 0.88850 0.92246 0.83978 0.90109 0.86816 0.77410 0.91208 0.91868 0.93217 0.92986 0.89669 0.91016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.14 71.98 0.66 -1.73 16 2 C -0.12 -1.23 4.92 30.60 0.15 -1.08 16 3 C -0.10 -1.28 1.65 -11.54 -0.02 -1.30 16 4 C -0.11 -1.49 4.41 30.59 0.13 -1.35 16 5 C -0.15 -1.25 9.53 71.98 0.69 -0.56 16 6 C 0.51 10.24 5.87 87.66 0.51 10.76 16 7 O -0.59 -16.89 15.30 -3.03 -0.05 -16.93 16 8 N -0.61 -10.07 2.97 -818.92 -2.43 -12.50 16 9 C 0.11 1.06 5.60 86.36 0.48 1.55 16 10 C -0.16 -2.22 5.33 30.67 0.16 -2.05 16 11 C 0.10 1.77 1.89 44.94 0.08 1.85 16 12 H 0.10 1.48 7.80 -2.39 -0.02 1.46 16 13 N -0.68 -18.13 5.05 -495.43 -2.50 -20.63 16 14 C 0.06 1.77 5.96 85.56 0.51 2.28 16 15 C 0.45 19.44 7.82 87.66 0.69 20.12 16 16 O -0.62 -33.73 15.78 -3.07 -0.05 -33.77 16 17 N -0.59 -27.00 5.09 -306.98 -1.56 -28.56 16 18 C -0.33 -19.00 10.16 84.04 0.85 -18.15 16 19 H 0.05 3.65 7.39 -2.91 -0.02 3.63 16 20 C -0.02 -1.01 5.50 84.93 0.47 -0.55 16 21 N -0.94 -56.21 13.96 21.66 0.30 -55.91 16 22 Si 0.97 37.75 27.74 68.60 1.90 39.66 16 23 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 24 H -0.28 -10.79 7.11 99.48 0.71 -10.09 16 25 H -0.23 -7.22 6.52 99.48 0.65 -6.57 16 26 C -0.08 -1.68 2.60 -10.71 -0.03 -1.71 16 27 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 28 C -0.13 -2.91 9.03 71.98 0.65 -2.26 16 29 C 0.12 2.21 5.73 86.36 0.49 2.70 16 30 H 0.03 0.59 7.04 -2.39 -0.02 0.57 16 31 H 0.06 0.91 6.59 -2.38 -0.02 0.90 16 32 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.10 0.65 6.91 -2.39 -0.02 0.63 16 34 H 0.08 0.76 5.98 -2.39 -0.01 0.74 16 35 H 0.12 0.88 7.38 -2.38 -0.02 0.86 16 36 H 0.06 1.01 6.15 -2.39 -0.01 1.00 16 37 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.06 0.47 6.92 -2.39 -0.02 0.45 16 41 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.11 0.70 4.37 -2.39 -0.01 0.69 16 43 H 0.09 1.04 7.43 -2.38 -0.02 1.02 16 44 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.34 10.26 8.18 -89.70 -0.73 9.53 16 46 H 0.08 1.68 7.41 -2.39 -0.02 1.66 16 47 H 0.11 2.59 8.05 -2.39 -0.02 2.57 16 48 H 0.39 14.46 5.76 -92.70 -0.53 13.93 16 49 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 50 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 51 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 52 H 0.05 1.46 7.57 -2.39 -0.02 1.44 16 53 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 54 H 0.07 1.66 7.00 -2.38 -0.02 1.64 16 Total: -1.00 -81.36 409.41 1.68 -79.68 By element: Atomic # 1 Polarization: 40.87 SS G_CDS: -0.42 Total: 40.44 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: 6.49 Total: 8.53 kcal Atomic # 7 Polarization: -111.41 SS G_CDS: -6.20 Total: -117.60 kcal Atomic # 8 Polarization: -50.61 SS G_CDS: -0.09 Total: -50.71 kcal Atomic # 14 Polarization: 37.75 SS G_CDS: 1.90 Total: 39.66 kcal Total: -81.36 1.68 -79.68 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319673657.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.538 kcal (2) G-P(sol) polarization free energy of solvation -81.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds