Wall clock time and date at job start Sat Apr 11 2020 05:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47135 * 2 1 4 4 C 1.52999 * 109.47027 * 302.21338 * 3 2 1 5 5 C 1.53003 * 109.46960 * 294.70985 * 4 3 2 6 6 C 1.50701 * 109.47312 * 62.21796 * 3 2 1 7 7 O 1.21276 * 119.99650 * 244.82603 * 6 3 2 8 8 N 1.34771 * 120.00335 * 64.82506 * 6 3 2 9 9 C 1.46931 * 120.62953 * 3.48253 * 8 6 3 10 10 C 1.53197 * 108.77529 * 233.58434 * 9 8 6 11 11 C 1.53041 * 109.31110 * 305.36535 * 10 9 8 12 12 H 1.09001 * 109.45999 * 301.34391 * 11 10 9 13 13 N 1.46898 * 109.45573 * 181.38627 * 11 10 9 14 14 C 1.46898 * 111.00209 * 85.00088 * 13 11 10 15 15 C 1.50699 * 109.47199 * 179.97438 * 14 13 11 16 16 O 1.21297 * 120.00106 * 0.02562 * 15 14 13 17 17 N 1.34778 * 120.00068 * 179.97438 * 15 14 13 18 18 C 1.37093 * 120.00010 * 179.97438 * 17 15 14 19 19 H 1.08001 * 120.00092 * 0.02562 * 18 17 15 20 20 C 1.38952 * 120.00036 * 180.02562 * 18 17 15 21 21 N 1.31413 * 120.00378 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99967 * 0.02562 * 20 18 17 23 23 H 1.48491 * 109.47191 * 89.99875 * 22 20 18 24 24 H 1.48500 * 109.46949 * 210.00178 * 22 20 18 25 25 H 1.48502 * 109.47141 * 329.99504 * 22 20 18 26 26 C 1.53042 * 109.53758 * 61.36691 * 11 10 9 27 27 H 1.09000 * 109.49200 * 178.68420 * 26 11 10 28 28 C 1.52994 * 109.49908 * 58.58467 * 26 11 10 29 29 C 1.46924 * 120.63218 * 183.20309 * 8 6 3 30 30 H 1.09004 * 109.46864 * 306.33755 * 1 2 3 31 31 H 1.08999 * 109.46867 * 66.33712 * 1 2 3 32 32 H 1.08998 * 109.47072 * 186.33676 * 1 2 3 33 33 H 1.08998 * 109.46893 * 239.99422 * 2 1 3 34 34 H 1.09003 * 109.46911 * 119.99960 * 2 1 3 35 35 H 1.09010 * 109.46847 * 182.21332 * 3 2 1 36 36 H 1.08998 * 109.47211 * 54.71877 * 4 3 2 37 37 H 1.09009 * 109.46874 * 174.71443 * 4 3 2 38 38 H 1.09007 * 109.46708 * 186.96746 * 5 4 3 39 39 H 1.08992 * 109.47433 * 306.97114 * 5 4 3 40 40 H 1.08994 * 109.46824 * 66.97620 * 5 4 3 41 41 H 1.09004 * 109.58802 * 353.37244 * 9 8 6 42 42 H 1.09000 * 109.58583 * 113.65677 * 9 8 6 43 43 H 1.09000 * 109.49479 * 65.31986 * 10 9 8 44 44 H 1.08997 * 109.49650 * 185.37787 * 10 9 8 45 45 H 1.00902 * 111.00018 * 321.04548 * 13 11 10 46 46 H 1.09000 * 109.47012 * 299.99949 * 14 13 11 47 47 H 1.09001 * 109.47359 * 59.99778 * 14 13 11 48 48 H 0.96998 * 120.00041 * 0.02562 * 17 15 14 49 49 H 0.96994 * 120.00205 * 180.02562 * 21 20 18 50 50 H 1.08996 * 109.47405 * 59.99841 * 28 26 11 51 51 H 1.08998 * 109.47094 * 179.97438 * 28 26 11 52 52 H 1.09005 * 109.46980 * 299.99965 * 28 26 11 53 53 H 1.09009 * 109.58364 * 246.19970 * 29 8 6 54 54 H 1.08996 * 109.58919 * 6.62447 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.4850 2.1796 -1.2205 5 6 2.0548 1.5554 -2.4959 6 6 1.5831 2.1368 1.2570 7 8 0.8122 3.0705 1.1879 8 7 2.0311 1.7203 2.4579 9 6 3.0232 0.6408 2.5535 10 6 2.4837 -0.4431 3.4922 11 6 2.1120 0.1897 4.8352 12 1 2.9909 0.6691 5.2663 13 7 1.6254 -0.8523 5.7491 14 6 2.7424 -1.5104 6.4397 15 6 2.2054 -2.5703 7.3668 16 8 1.0097 -2.7592 7.4441 17 7 3.0538 -3.3090 8.1092 18 6 2.5652 -4.2728 8.9529 19 1 1.5006 -4.4404 9.0224 20 6 3.4398 -5.0340 9.7187 21 7 2.9716 -5.9582 10.5271 22 14 5.2812 -4.7436 9.5990 23 1 5.6874 -3.7232 10.5985 24 1 6.0012 -6.0142 9.8681 25 1 5.6189 -4.2626 8.2352 26 6 1.0142 1.2345 4.6223 27 1 0.7336 1.6681 5.5822 28 6 -0.2073 0.5692 3.9850 29 6 1.5412 2.3412 3.6962 30 1 -0.3633 0.6090 0.8279 31 1 -0.3633 0.4125 -0.9413 32 1 -0.3633 -1.0214 0.1134 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.1294 1.4426 -0.0397 36 1 0.3981 2.0988 -1.2305 37 1 1.7708 3.2304 -1.1712 38 1 1.7595 2.1549 -3.3570 39 1 3.1424 1.5242 -2.4306 40 1 1.6684 0.5425 -2.6086 41 1 3.1963 0.2150 1.5651 42 1 3.9580 1.0376 2.9493 43 1 1.5997 -0.9013 3.0487 44 1 3.2487 -1.2038 3.6472 45 1 1.0560 -1.5259 5.2590 46 1 3.4033 -1.9706 5.7052 47 1 3.2988 -0.7717 7.0166 48 1 4.0099 -3.1582 8.0471 49 1 3.5821 -6.4893 11.0619 50 1 -0.5772 -0.2173 4.6427 51 1 -0.9890 1.3136 3.8340 52 1 0.0740 0.1372 3.0246 53 1 2.3570 2.8733 4.1856 54 1 0.7362 3.0377 3.4620 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319673658.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:12 Heat of formation + Delta-G solvation = -103.653178 kcal Electronic energy + Delta-G solvation = -31170.072317 eV Core-core repulsion = 27140.333982 eV Total energy + Delta-G solvation = -4029.738336 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.79582 -40.35136 -39.33800 -37.10008 -36.34412 -35.78231 -33.84768 -33.64735 -32.10233 -31.88656 -28.96489 -28.55302 -27.38382 -26.10554 -24.64295 -24.19770 -23.80701 -22.02617 -21.29823 -20.44424 -20.16594 -19.32131 -18.10497 -17.63093 -17.13546 -17.02544 -16.73481 -16.50370 -16.25012 -16.03516 -15.47426 -15.29028 -15.07687 -15.04172 -14.78643 -14.49145 -14.24908 -14.19265 -13.96382 -13.84931 -13.65002 -13.57369 -13.32457 -13.02893 -12.86081 -12.74438 -12.70123 -12.62046 -12.39464 -12.33937 -12.25748 -12.02724 -11.95681 -11.92231 -11.61636 -11.49638 -11.48117 -11.39117 -11.31970 -10.57638 -10.40400 -10.23208 -9.61546 -9.20657 -8.39774 -6.00825 1.31154 1.37788 1.46377 1.66786 1.98683 2.05585 2.24809 2.75194 3.16751 3.41759 3.47949 3.73829 3.79075 3.88303 3.91676 4.04779 4.08737 4.19434 4.24726 4.27409 4.34811 4.43514 4.46701 4.48177 4.54691 4.58448 4.59387 4.71755 4.72971 4.75089 4.79138 4.83716 4.88325 4.91352 4.94323 5.04327 5.12815 5.18434 5.20710 5.24562 5.26361 5.30063 5.36577 5.41118 5.54725 5.55714 5.63917 5.93772 6.13157 6.41722 6.47105 6.61800 6.90289 7.22583 7.42118 7.99591 8.77966 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.021044 B = 0.002220 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.244963 B =12608.623345 C =12903.284243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.119 4.119 3 C -0.103 4.103 4 C -0.106 4.106 5 C -0.147 4.147 6 C 0.516 3.484 7 O -0.588 6.588 8 N -0.605 5.605 9 C 0.104 3.896 10 C -0.167 4.167 11 C 0.098 3.902 12 H 0.095 0.905 13 N -0.680 5.680 14 C 0.064 3.936 15 C 0.447 3.553 16 O -0.617 6.617 17 N -0.591 5.591 18 C -0.328 4.328 19 H 0.053 0.947 20 C -0.019 4.019 21 N -0.936 5.936 22 Si 0.967 3.033 23 H -0.259 1.259 24 H -0.277 1.277 25 H -0.227 1.227 26 C -0.086 4.086 27 H 0.079 0.921 28 C -0.138 4.138 29 C 0.119 3.881 30 H 0.031 0.969 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.118 0.882 36 H 0.055 0.945 37 H 0.050 0.950 38 H 0.056 0.944 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.112 0.888 42 H 0.091 0.909 43 H 0.067 0.933 44 H 0.090 0.910 45 H 0.343 0.657 46 H 0.082 0.918 47 H 0.114 0.886 48 H 0.390 0.610 49 H 0.279 0.721 50 H 0.048 0.952 51 H 0.040 0.960 52 H 0.057 0.943 53 H 0.083 0.917 54 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.552 16.121 -25.771 31.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.157 4.157 3 C -0.124 4.124 4 C -0.144 4.144 5 C -0.205 4.205 6 C 0.306 3.694 7 O -0.468 6.468 8 N -0.337 5.337 9 C -0.018 4.018 10 C -0.206 4.206 11 C -0.012 4.012 12 H 0.113 0.887 13 N -0.312 5.312 14 C -0.069 4.069 15 C 0.235 3.765 16 O -0.501 6.501 17 N -0.233 5.233 18 C -0.457 4.457 19 H 0.071 0.929 20 C -0.217 4.217 21 N -0.577 5.577 22 Si 0.787 3.213 23 H -0.183 1.183 24 H -0.202 1.202 25 H -0.150 1.150 26 C -0.106 4.106 27 H 0.097 0.903 28 C -0.195 4.195 29 C -0.004 4.004 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.115 0.885 34 H 0.100 0.900 35 H 0.136 0.864 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.130 0.870 42 H 0.109 0.891 43 H 0.086 0.914 44 H 0.109 0.891 45 H 0.162 0.838 46 H 0.099 0.901 47 H 0.132 0.868 48 H 0.226 0.774 49 H 0.088 0.912 50 H 0.067 0.933 51 H 0.059 0.941 52 H 0.075 0.925 53 H 0.101 0.899 54 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.248 16.750 -25.068 31.008 hybrid contribution 0.454 -0.829 0.192 0.964 sum 7.702 15.921 -24.876 30.523 Atomic orbital electron populations 1.21848 0.96583 1.01544 1.01351 1.21763 0.95777 0.93563 1.04551 1.21481 1.03013 0.96488 0.91425 1.21345 1.00610 0.98819 0.93603 1.21790 1.01539 1.01159 0.95965 1.21189 0.79638 0.82791 0.85753 1.90661 1.37642 1.31134 1.87356 1.48157 1.43088 1.37075 1.05366 1.22075 0.90984 0.86669 1.02114 1.22721 1.02538 0.98968 0.96386 1.21609 0.97107 0.91938 0.90518 0.88680 1.60135 1.20358 1.17252 1.33417 1.21666 0.93627 0.95132 0.96427 1.21109 0.86547 0.84749 0.84069 1.90554 1.17909 1.71568 1.70094 1.42027 1.08529 1.33568 1.39164 1.18989 0.94251 1.13110 1.19379 0.92923 1.26170 1.05495 0.95007 0.95011 1.69813 1.38173 1.22969 1.26733 0.85333 0.75953 0.79041 0.80973 1.18310 1.20194 1.14991 1.21457 0.95328 0.95241 0.98563 0.90298 1.21729 0.97248 1.00194 1.00359 1.21692 0.99798 0.94834 0.84074 0.95032 0.92185 0.92045 0.88465 0.90025 0.86375 0.92600 0.93069 0.92491 0.91470 0.91690 0.87013 0.89119 0.91447 0.89110 0.83777 0.90076 0.86820 0.77407 0.91206 0.93300 0.94097 0.92451 0.89857 0.90966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 9.19 71.98 0.66 -1.66 16 2 C -0.12 -1.22 4.98 30.59 0.15 -1.07 16 3 C -0.10 -1.27 1.66 -11.54 -0.02 -1.29 16 4 C -0.11 -1.50 4.46 30.59 0.14 -1.36 16 5 C -0.15 -1.30 9.50 71.98 0.68 -0.62 16 6 C 0.52 9.94 5.76 87.66 0.51 10.44 16 7 O -0.59 -16.55 15.39 -3.02 -0.05 -16.59 16 8 N -0.60 -9.44 2.40 -818.05 -1.96 -11.40 16 9 C 0.10 0.99 5.50 86.36 0.48 1.47 16 10 C -0.17 -2.14 4.76 30.67 0.15 -2.00 16 11 C 0.10 1.73 2.13 44.94 0.10 1.82 16 12 H 0.10 1.42 7.80 -2.39 -0.02 1.40 16 13 N -0.68 -18.03 5.43 -495.44 -2.69 -20.72 16 14 C 0.06 1.74 5.96 85.56 0.51 2.25 16 15 C 0.45 19.41 7.82 87.66 0.69 20.10 16 16 O -0.62 -33.69 15.78 -3.08 -0.05 -33.74 16 17 N -0.59 -26.97 5.09 -306.98 -1.56 -28.54 16 18 C -0.33 -18.99 10.16 84.04 0.85 -18.14 16 19 H 0.05 3.66 7.39 -2.91 -0.02 3.64 16 20 C -0.02 -1.02 5.50 84.93 0.47 -0.55 16 21 N -0.94 -56.17 13.96 21.66 0.30 -55.87 16 22 Si 0.97 37.75 27.74 68.60 1.90 39.65 16 23 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 24 H -0.28 -10.79 7.11 99.48 0.71 -10.08 16 25 H -0.23 -7.21 6.52 99.48 0.65 -6.56 16 26 C -0.09 -1.68 2.92 -10.57 -0.03 -1.71 16 27 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 28 C -0.14 -3.11 8.47 71.98 0.61 -2.50 16 29 C 0.12 2.12 5.86 86.51 0.51 2.63 16 30 H 0.03 0.63 6.67 -2.38 -0.02 0.61 16 31 H 0.06 0.87 6.64 -2.39 -0.02 0.86 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.10 0.64 6.84 -2.39 -0.02 0.63 16 34 H 0.08 0.75 4.77 -2.39 -0.01 0.74 16 35 H 0.12 0.89 7.54 -2.38 -0.02 0.87 16 36 H 0.06 0.98 6.25 -2.39 -0.01 0.97 16 37 H 0.05 0.88 8.02 -2.38 -0.02 0.86 16 38 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 39 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.06 0.48 6.98 -2.39 -0.02 0.47 16 41 H 0.11 0.66 4.32 -2.39 -0.01 0.65 16 42 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.07 1.03 5.86 -2.39 -0.01 1.02 16 44 H 0.09 0.97 7.43 -2.39 -0.02 0.96 16 45 H 0.34 10.13 7.46 -89.69 -0.67 9.46 16 46 H 0.08 1.68 7.42 -2.39 -0.02 1.66 16 47 H 0.11 2.58 8.05 -2.39 -0.02 2.56 16 48 H 0.39 14.46 5.76 -92.71 -0.53 13.92 16 49 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 50 H 0.05 1.27 7.24 -2.39 -0.02 1.26 16 51 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 52 H 0.06 1.22 5.55 -2.38 -0.01 1.20 16 53 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 54 H 0.07 1.62 7.02 -2.39 -0.02 1.61 16 Total: -1.00 -80.95 401.44 1.99 -78.96 By element: Atomic # 1 Polarization: 40.78 SS G_CDS: -0.34 Total: 40.44 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: 6.44 Total: 7.81 kcal Atomic # 7 Polarization: -110.62 SS G_CDS: -5.91 Total: -116.53 kcal Atomic # 8 Polarization: -50.24 SS G_CDS: -0.10 Total: -50.34 kcal Atomic # 14 Polarization: 37.75 SS G_CDS: 1.90 Total: 39.65 kcal Total: -80.95 1.99 -78.96 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319673658.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.694 kcal (2) G-P(sol) polarization free energy of solvation -80.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds