Wall clock time and date at job start Sat Apr 11 2020 05:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47005 * 2 1 4 4 C 1.53001 * 109.47401 * 60.00152 * 3 2 1 5 5 C 1.53003 * 109.46773 * 299.99615 * 3 2 1 6 6 C 1.50706 * 109.46986 * 180.02562 * 3 2 1 7 7 O 1.21277 * 119.99730 * 354.11055 * 6 3 2 8 8 N 1.34774 * 119.99800 * 174.11244 * 6 3 2 9 9 C 1.47023 * 125.64973 * 354.37092 * 8 6 3 10 10 C 1.54319 * 107.26896 * 178.98567 * 9 8 6 11 11 C 1.55158 * 102.94539 * 337.80979 * 10 9 8 12 12 H 1.09000 * 110.99890 * 277.38720 * 11 10 9 13 13 C 1.53001 * 111.00284 * 153.57621 * 11 10 9 14 14 C 1.53002 * 109.47293 * 66.45320 * 13 11 10 15 15 N 1.46899 * 109.46934 * 179.97438 * 14 13 11 16 16 C 1.46900 * 110.99663 * 180.02562 * 15 14 13 17 17 C 1.50709 * 109.46973 * 180.02562 * 16 15 14 18 18 O 1.21291 * 119.99560 * 359.97438 * 17 16 15 19 19 N 1.34775 * 120.00051 * 180.02562 * 17 16 15 20 20 C 1.37096 * 120.00100 * 180.02562 * 19 17 16 21 21 H 1.08005 * 119.99592 * 359.97438 * 20 19 17 22 22 C 1.38942 * 120.00166 * 179.97438 * 20 19 17 23 23 N 1.31418 * 119.99803 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00267 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46706 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47375 * 119.99944 * 24 22 20 27 27 H 1.48498 * 109.46850 * 240.00031 * 24 22 20 28 28 C 1.47421 * 125.64774 * 174.42703 * 8 6 3 29 29 H 1.09001 * 109.47393 * 60.00360 * 1 2 3 30 30 H 1.09007 * 109.47531 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47127 * 299.99864 * 1 2 3 32 32 H 1.08998 * 109.46794 * 239.99464 * 2 1 3 33 33 H 1.09001 * 109.47082 * 120.00089 * 2 1 3 34 34 H 1.08998 * 109.47021 * 180.92202 * 4 3 2 35 35 H 1.09003 * 109.46644 * 300.91604 * 4 3 2 36 36 H 1.08994 * 109.47115 * 60.91478 * 4 3 2 37 37 H 1.08996 * 109.47433 * 286.21466 * 5 3 2 38 38 H 1.09004 * 109.47110 * 46.22110 * 5 3 2 39 39 H 1.09002 * 109.46702 * 166.21325 * 5 3 2 40 40 H 1.09002 * 109.88091 * 59.56923 * 9 8 6 41 41 H 1.09001 * 109.88017 * 298.40335 * 9 8 6 42 42 H 1.08998 * 110.72038 * 219.44492 * 10 9 8 43 43 H 1.09000 * 110.71902 * 96.17371 * 10 9 8 44 44 H 1.08996 * 109.47324 * 306.45167 * 13 11 10 45 45 H 1.09004 * 109.46720 * 186.45318 * 13 11 10 46 46 H 1.09004 * 109.46673 * 60.00155 * 14 13 11 47 47 H 1.08994 * 109.47141 * 299.99466 * 14 13 11 48 48 H 1.00898 * 111.00166 * 303.95369 * 15 14 13 49 49 H 1.08995 * 109.47200 * 60.00240 * 16 15 14 50 50 H 1.08998 * 109.47190 * 299.99582 * 16 15 14 51 51 H 0.96998 * 119.99730 * 359.97438 * 19 17 16 52 52 H 0.97007 * 119.99560 * 179.97438 * 23 22 20 53 53 H 1.09006 * 110.37112 * 85.24077 * 28 8 6 54 54 H 1.09003 * 110.36684 * 322.91867 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1638 1.2492 5 6 1.5300 2.1636 -1.2493 6 6 3.5470 1.4425 -0.0006 7 8 4.1534 0.3977 0.1067 8 7 4.2208 2.6035 -0.1205 9 6 3.6194 3.9210 -0.3737 10 6 4.7686 4.9505 -0.4061 11 6 5.8938 4.2407 0.3923 12 1 5.7534 4.3712 1.4653 13 6 7.2732 4.7401 -0.0422 14 6 7.4310 6.2100 0.3521 15 7 8.7557 6.6892 -0.0645 16 6 8.9433 8.1000 0.2991 17 6 10.3100 8.5554 -0.1437 18 8 11.0545 7.7806 -0.7063 19 7 10.7053 9.8232 0.0864 20 6 11.9484 10.2375 -0.3168 21 1 12.6110 9.5479 -0.8186 22 6 12.3557 11.5447 -0.0801 23 7 11.5491 12.3839 0.5300 24 14 14.0497 12.1091 -0.6289 25 1 14.7579 10.9818 -1.2868 26 1 13.9100 13.2339 -1.5883 27 1 14.8280 12.5600 0.5526 28 6 5.6830 2.7626 -0.0205 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.8798 3.1961 1.2410 35 1 0.4401 2.1495 1.2575 36 1 1.9067 1.6596 2.1391 37 1 2.0793 1.8109 -2.1222 38 1 0.4678 1.9565 -1.3803 39 1 1.6794 3.2373 -1.1354 40 1 2.9214 4.1697 0.4257 41 1 3.1010 3.9138 -1.3325 42 1 4.4711 5.8761 0.0866 43 1 5.0854 5.1427 -1.4312 44 1 7.3716 4.6413 -1.1232 45 1 8.0453 4.1473 0.4485 46 1 7.3327 6.3087 1.4332 47 1 6.6590 6.8026 -0.1386 48 1 9.4874 6.1149 0.3265 49 1 8.8553 8.2115 1.3798 50 1 8.1821 8.7062 -0.1919 51 1 10.1100 10.4426 0.5367 52 1 11.8337 13.2964 0.6956 53 1 6.1527 2.5673 -0.9846 54 1 6.0861 2.0950 0.7410 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326352715.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:45 Heat of formation + Delta-G solvation = -107.450750 kcal Electronic energy + Delta-G solvation = -29236.534035 eV Core-core repulsion = 25206.631024 eV Total energy + Delta-G solvation = -4029.903011 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.66887 -40.15637 -39.19260 -37.36723 -37.01845 -35.88744 -34.04457 -33.24014 -31.31103 -30.85740 -29.41679 -28.34287 -27.58328 -26.19000 -25.53923 -24.06582 -23.22612 -21.49747 -21.30912 -20.92520 -19.90313 -19.68830 -17.90126 -17.69627 -17.41083 -16.92876 -16.72744 -16.46477 -16.04422 -15.93084 -15.65248 -15.26933 -15.18063 -15.06143 -14.92556 -14.57351 -14.15392 -14.08760 -13.95023 -13.56769 -13.49986 -13.44424 -13.22931 -13.16932 -12.93528 -12.90886 -12.74553 -12.65162 -12.40915 -12.38487 -12.19038 -12.11533 -12.08592 -11.82837 -11.56053 -11.52817 -11.50334 -11.48120 -11.29258 -10.69848 -10.33985 -10.00871 -9.66089 -9.28557 -8.46605 -5.95212 1.36960 1.42478 1.56131 1.56546 1.95203 2.05994 2.29829 2.94586 3.20916 3.32527 3.51807 3.61749 3.66259 3.78084 3.85937 3.94820 4.18560 4.23580 4.28116 4.33698 4.36575 4.41610 4.44498 4.49926 4.52958 4.54960 4.61284 4.67797 4.72508 4.74382 4.81077 4.83279 4.84178 4.87591 4.97386 5.06341 5.07704 5.09682 5.15222 5.19616 5.23106 5.26791 5.31334 5.41361 5.41759 5.47307 5.55748 5.91832 6.14592 6.43250 6.49971 6.60926 7.09369 7.13327 7.57003 8.12643 8.70957 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.041938 B = 0.001427 C = 0.001403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.497848 B =19616.170216 C =19947.666930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.100 4.100 3 C -0.073 4.073 4 C -0.143 4.143 5 C -0.155 4.155 6 C 0.526 3.474 7 O -0.594 6.594 8 N -0.615 5.615 9 C 0.085 3.915 10 C -0.127 4.127 11 C -0.084 4.084 12 H 0.092 0.908 13 C -0.099 4.099 14 C 0.065 3.935 15 N -0.688 5.688 16 C 0.066 3.934 17 C 0.435 3.565 18 O -0.625 6.625 19 N -0.573 5.573 20 C -0.335 4.335 21 H 0.077 0.923 22 C -0.011 4.011 23 N -0.919 5.919 24 Si 0.992 3.008 25 H -0.274 1.274 26 H -0.270 1.270 27 H -0.271 1.271 28 C 0.106 3.894 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.048 0.952 33 H 0.049 0.951 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.046 0.954 37 H 0.045 0.955 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.105 0.895 43 H 0.080 0.920 44 H 0.067 0.933 45 H 0.059 0.941 46 H 0.039 0.961 47 H 0.086 0.914 48 H 0.342 0.658 49 H 0.066 0.934 50 H 0.106 0.894 51 H 0.397 0.603 52 H 0.278 0.722 53 H 0.061 0.939 54 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.215 -15.826 2.033 32.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.139 4.139 3 C -0.076 4.076 4 C -0.200 4.200 5 C -0.212 4.212 6 C 0.317 3.683 7 O -0.474 6.474 8 N -0.348 5.348 9 C -0.036 4.036 10 C -0.164 4.164 11 C -0.104 4.104 12 H 0.111 0.889 13 C -0.138 4.138 14 C -0.064 4.064 15 N -0.321 5.321 16 C -0.066 4.066 17 C 0.223 3.777 18 O -0.512 6.512 19 N -0.210 5.210 20 C -0.465 4.465 21 H 0.095 0.905 22 C -0.211 4.211 23 N -0.560 5.560 24 Si 0.816 3.184 25 H -0.199 1.199 26 H -0.196 1.196 27 H -0.196 1.196 28 C -0.017 4.017 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.112 0.888 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.112 0.888 41 H 0.109 0.891 42 H 0.123 0.877 43 H 0.099 0.901 44 H 0.085 0.915 45 H 0.078 0.922 46 H 0.057 0.943 47 H 0.104 0.896 48 H 0.160 0.840 49 H 0.084 0.916 50 H 0.124 0.876 51 H 0.231 0.769 52 H 0.087 0.913 53 H 0.079 0.921 54 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -27.636 -16.601 1.130 32.259 hybrid contribution 1.336 0.253 0.902 1.632 sum -26.300 -16.348 2.032 31.034 Atomic orbital electron populations 1.21915 0.93121 1.02453 1.03193 1.21329 0.97357 0.93698 1.01480 1.20782 0.88377 0.98653 0.99805 1.22012 1.03253 1.00450 0.94271 1.22277 1.02991 1.01610 0.94308 1.21076 0.91081 0.81604 0.74568 1.90668 1.71627 1.32712 1.52432 1.48563 1.07727 1.08064 1.70418 1.22766 0.97097 0.80710 1.03016 1.22824 0.93526 0.98365 1.01702 1.22206 0.94859 0.92330 1.01021 0.88949 1.21376 0.95770 0.94747 1.01882 1.22028 0.90133 0.95865 0.98365 1.60094 1.05177 1.01578 1.65207 1.21525 0.93790 0.91581 0.99701 1.20982 0.90458 0.82466 0.83791 1.90492 1.57688 1.54916 1.48099 1.41933 1.15806 1.10527 1.52759 1.19704 0.93343 0.96435 1.36974 0.90456 1.26011 1.03212 0.95238 0.96646 1.69677 1.37972 1.06422 1.41971 0.84886 0.77243 0.78056 0.78239 1.19910 1.19551 1.19578 1.22263 0.81080 0.97462 1.00906 0.90989 0.92398 0.91141 0.93328 0.93228 0.90502 0.88816 0.93496 0.93556 0.89108 0.89244 0.88840 0.89077 0.87679 0.90143 0.91454 0.92182 0.94266 0.89599 0.84013 0.91591 0.87567 0.76902 0.91288 0.92074 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.24 71.98 0.67 -0.60 16 2 C -0.10 -1.50 4.30 30.59 0.13 -1.37 16 3 C -0.07 -0.97 0.52 -52.93 -0.03 -1.00 16 4 C -0.14 -1.28 7.98 71.98 0.57 -0.70 16 5 C -0.16 -1.32 7.55 71.98 0.54 -0.77 16 6 C 0.53 11.18 6.53 87.66 0.57 11.75 16 7 O -0.59 -18.36 16.29 -3.02 -0.05 -18.41 16 8 N -0.62 -10.43 3.32 -811.81 -2.70 -13.13 16 9 C 0.09 0.79 4.99 86.73 0.43 1.22 16 10 C -0.13 -1.21 5.59 31.78 0.18 -1.03 16 11 C -0.08 -1.15 3.07 -9.40 -0.03 -1.18 16 12 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 13 C -0.10 -1.75 4.99 30.60 0.15 -1.60 16 14 C 0.06 1.28 5.54 86.30 0.48 1.76 16 15 N -0.69 -20.73 6.13 -517.93 -3.17 -23.90 16 16 C 0.07 2.19 6.17 85.56 0.53 2.72 16 17 C 0.44 20.62 7.82 87.66 0.69 21.31 16 18 O -0.63 -34.89 15.78 -3.06 -0.05 -34.94 16 19 N -0.57 -29.24 5.29 -306.98 -1.62 -30.86 16 20 C -0.33 -19.06 9.68 84.04 0.81 -18.24 16 21 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 22 C -0.01 -0.60 5.50 84.92 0.47 -0.13 16 23 N -0.92 -49.17 13.05 21.66 0.28 -48.89 16 24 Si 0.99 42.81 29.55 68.60 2.03 44.84 16 25 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 26 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 27 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 28 C 0.11 1.94 6.35 86.85 0.55 2.50 16 29 H 0.07 0.43 6.15 -2.39 -0.01 0.42 16 30 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 31 H 0.07 0.44 6.41 -2.39 -0.02 0.42 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.87 16 33 H 0.05 0.92 8.04 -2.39 -0.02 0.90 16 34 H 0.08 0.50 5.27 -2.39 -0.01 0.49 16 35 H 0.09 0.46 6.38 -2.39 -0.02 0.45 16 36 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.05 0.53 8.06 -2.39 -0.02 0.51 16 38 H 0.09 0.47 5.81 -2.38 -0.01 0.46 16 39 H 0.09 0.45 4.89 -2.39 -0.01 0.44 16 40 H 0.09 0.53 5.55 -2.39 -0.01 0.52 16 41 H 0.09 0.64 5.84 -2.39 -0.01 0.63 16 42 H 0.10 0.65 8.13 -2.39 -0.02 0.63 16 43 H 0.08 0.86 8.01 -2.39 -0.02 0.84 16 44 H 0.07 1.34 8.11 -2.39 -0.02 1.32 16 45 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.04 0.70 8.14 -2.38 -0.02 0.68 16 47 H 0.09 1.48 7.51 -2.39 -0.02 1.47 16 48 H 0.34 11.07 8.43 -89.70 -0.76 10.31 16 49 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 50 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 51 H 0.40 19.08 7.90 -92.71 -0.73 18.34 16 52 H 0.28 13.84 8.31 -92.70 -0.77 13.07 16 53 H 0.06 1.22 8.04 -2.38 -0.02 1.20 16 54 H 0.06 1.28 8.09 -2.39 -0.02 1.26 16 Total: -1.00 -75.60 413.77 0.86 -74.74 By element: Atomic # 1 Polarization: 36.51 SS G_CDS: -0.58 Total: 35.93 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: 6.72 Total: 14.63 kcal Atomic # 7 Polarization: -109.58 SS G_CDS: -7.21 Total: -116.79 kcal Atomic # 8 Polarization: -53.25 SS G_CDS: -0.10 Total: -53.35 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -75.60 0.86 -74.74 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326352715.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.713 kcal (2) G-P(sol) polarization free energy of solvation -75.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds