Wall clock time and date at job start Sat Apr 11 2020 05:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.52992 * 109.47482 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47482 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47212 * 180.02562 * 5 4 3 7 7 O 1.21279 * 120.00251 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00115 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00376 * 179.97438 * 8 6 5 10 10 H 1.09002 * 108.91690 * 326.29646 * 9 8 6 11 11 C 1.45886 * 108.93613 * 84.99866 * 9 8 6 12 12 C 1.54313 * 112.18263 * 181.81880 * 11 9 8 13 13 C 1.50447 * 108.49667 * 281.46101 * 12 11 9 14 14 N 1.48004 * 112.82084 * 93.73557 * 13 12 11 15 15 C 1.46902 * 111.00228 * 84.83393 * 14 13 12 16 16 C 1.50705 * 109.46910 * 66.04397 * 15 14 13 17 17 O 1.21287 * 120.00031 * 0.02562 * 16 15 14 18 18 N 1.34779 * 119.99578 * 179.97438 * 16 15 14 19 19 C 1.37092 * 119.99585 * 179.97438 * 18 16 15 20 20 H 1.07997 * 120.00621 * 0.02562 * 19 18 16 21 21 C 1.38956 * 119.99661 * 179.97438 * 19 18 16 22 22 N 1.31409 * 120.00197 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99653 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.46853 * 90.00693 * 23 21 19 25 25 H 1.48500 * 109.46687 * 210.00421 * 23 21 19 26 26 H 1.48500 * 109.47293 * 330.00400 * 23 21 19 27 27 C 1.47997 * 114.62737 * 318.08445 * 14 13 12 28 28 C 1.50441 * 112.83346 * 318.09225 * 27 14 13 29 29 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 30 30 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 31 31 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 33 33 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 34 34 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 35 35 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 36 36 H 1.09002 * 109.47103 * 300.00247 * 4 3 2 37 37 H 1.09001 * 109.47066 * 60.00169 * 4 3 2 38 38 H 1.09002 * 109.47153 * 300.00216 * 5 4 3 39 39 H 1.09001 * 109.47289 * 60.00300 * 5 4 3 40 40 H 0.97004 * 120.00228 * 359.97438 * 8 6 5 41 41 H 1.08996 * 108.93577 * 302.51945 * 11 9 8 42 42 H 1.09000 * 108.93501 * 61.21307 * 11 9 8 43 43 H 1.09000 * 109.63344 * 41.16517 * 12 11 9 44 44 H 1.09003 * 109.62733 * 161.76234 * 12 11 9 45 45 H 1.08998 * 108.80927 * 214.58944 * 13 12 11 46 46 H 1.08997 * 108.81413 * 332.86922 * 13 12 11 47 47 H 1.09000 * 109.46781 * 186.04747 * 15 14 13 48 48 H 1.09003 * 109.47018 * 306.04577 * 15 14 13 49 49 H 0.97002 * 120.00025 * 359.97438 * 18 16 15 50 50 H 0.96996 * 120.00403 * 179.97438 * 22 21 19 51 51 H 1.09001 * 108.81041 * 78.96151 * 27 14 13 52 52 H 1.09004 * 108.81142 * 197.34164 * 27 14 13 53 53 H 1.08994 * 109.63418 * 334.03040 * 28 27 14 54 54 H 1.09003 * 109.63542 * 213.43474 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8851 -0.0013 6 6 5.5869 2.8851 -0.0026 7 8 6.1934 1.8348 -0.0024 8 7 6.2608 4.0523 -0.0028 9 6 7.7258 4.0524 -0.0034 10 1 8.0795 3.1946 0.5685 11 6 8.1986 3.9323 -1.3783 12 6 9.7385 3.8796 -1.4624 13 6 10.2728 5.2781 -1.3135 14 7 10.6274 5.6114 0.0842 15 6 11.9863 5.1552 0.4057 16 6 12.9842 5.9335 -0.4128 17 8 12.6010 6.7847 -1.1872 18 7 14.3024 5.6843 -0.2833 19 6 15.2100 6.3919 -1.0282 20 1 14.8689 7.1492 -1.7184 21 6 16.5691 6.1354 -0.8943 22 7 16.9843 5.2142 -0.0541 23 14 17.8060 7.1001 -1.9088 24 1 18.2155 8.3174 -1.1634 25 1 18.9987 6.2548 -2.1697 26 1 17.1870 7.4948 -3.1996 27 6 9.6562 5.1394 1.0962 28 6 8.2269 5.3450 0.6742 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 3.9336 0.9286 0.8891 37 1 3.9329 0.9289 -0.8909 38 1 3.7161 3.3987 -0.8913 39 1 3.7170 3.3992 0.8887 40 1 5.7758 4.8924 -0.0025 41 1 7.7890 3.0214 -1.8149 42 1 7.8434 4.7892 -1.9507 43 1 10.1277 3.2516 -0.6610 44 1 10.0388 3.4737 -2.4284 45 1 11.1613 5.3829 -1.9361 46 1 9.5170 5.9820 -1.6619 47 1 12.1820 5.3156 1.4659 48 1 12.0771 4.0936 0.1759 49 1 14.6088 5.0044 0.3370 50 1 17.9330 5.0349 0.0391 51 1 9.8211 4.0765 1.2728 52 1 9.8274 5.6804 2.0269 53 1 8.1689 6.1743 -0.0308 54 1 7.6140 5.5611 1.5493 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327100507.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:49 Heat of formation + Delta-G solvation = -118.156408 kcal Electronic energy + Delta-G solvation = -29434.658143 eV Core-core repulsion = 25404.290900 eV Total energy + Delta-G solvation = -4030.367243 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.42806 -40.42644 -39.29798 -36.97087 -36.39575 -35.76089 -33.91566 -33.24530 -33.15703 -32.42216 -29.56520 -28.07678 -27.04223 -25.79757 -25.28488 -23.43234 -21.89953 -21.72900 -21.50409 -20.94062 -20.49002 -19.75280 -18.08871 -17.74400 -17.63646 -17.02068 -16.85395 -16.51037 -16.36012 -15.93589 -15.77419 -15.34783 -15.24916 -14.93714 -14.81935 -14.29295 -14.24938 -14.21726 -14.03904 -14.00906 -13.53359 -13.23742 -13.11921 -13.05039 -12.81618 -12.79109 -12.70836 -12.54803 -12.39617 -12.12209 -11.98602 -11.93962 -11.87963 -11.83018 -11.81484 -11.67250 -11.50652 -11.36583 -11.35406 -10.74958 -10.24249 -10.08669 -9.97055 -9.03312 -8.44527 -5.93031 1.38810 1.42024 1.54795 1.70021 2.08883 2.20152 2.29592 2.74342 3.22559 3.41336 3.58481 3.71330 3.86950 3.88861 4.00192 4.03935 4.10699 4.21983 4.29997 4.32891 4.33555 4.40974 4.43972 4.49030 4.53496 4.59247 4.65596 4.70239 4.75470 4.76825 4.87578 4.87869 4.96333 4.96857 5.00808 5.05822 5.07911 5.12700 5.21771 5.24742 5.27783 5.36879 5.37389 5.42787 5.45968 5.51880 5.56650 5.92844 6.13180 6.32829 6.62546 6.63343 7.15383 7.33299 7.59540 8.15364 8.73007 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.039340 B = 0.001549 C = 0.001539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.580966 B =18077.133008 C =18191.774715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.130 4.130 3 C -0.113 4.113 4 C -0.104 4.104 5 C -0.132 4.132 6 C 0.504 3.496 7 O -0.591 6.591 8 N -0.717 5.717 9 C 0.152 3.848 10 H 0.061 0.939 11 C -0.118 4.118 12 C -0.137 4.137 13 C 0.070 3.930 14 N -0.541 5.541 15 C 0.061 3.939 16 C 0.443 3.557 17 O -0.612 6.612 18 N -0.577 5.577 19 C -0.331 4.331 20 H 0.079 0.921 21 C -0.013 4.013 22 N -0.922 5.922 23 Si 0.992 3.008 24 H -0.271 1.271 25 H -0.272 1.272 26 H -0.273 1.273 27 C 0.063 3.937 28 C -0.113 4.113 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.051 0.949 37 H 0.048 0.952 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.417 0.583 41 H 0.050 0.950 42 H 0.076 0.924 43 H 0.057 0.943 44 H 0.067 0.933 45 H 0.048 0.952 46 H 0.075 0.925 47 H 0.107 0.893 48 H 0.059 0.941 49 H 0.395 0.605 50 H 0.277 0.723 51 H 0.034 0.966 52 H 0.087 0.913 53 H 0.083 0.917 54 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.956 -5.898 3.680 31.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.168 4.168 3 C -0.150 4.150 4 C -0.142 4.142 5 C -0.172 4.172 6 C 0.293 3.707 7 O -0.472 6.472 8 N -0.369 5.369 9 C 0.047 3.953 10 H 0.079 0.921 11 C -0.156 4.156 12 C -0.177 4.177 13 C -0.057 4.057 14 N -0.267 5.267 15 C -0.071 4.071 16 C 0.231 3.769 17 O -0.498 6.498 18 N -0.214 5.214 19 C -0.461 4.461 20 H 0.097 0.903 21 C -0.213 4.213 22 N -0.564 5.564 23 Si 0.816 3.184 24 H -0.196 1.196 25 H -0.197 1.197 26 H -0.198 1.198 27 C -0.063 4.063 28 C -0.151 4.151 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.134 0.866 39 H 0.137 0.863 40 H 0.254 0.746 41 H 0.069 0.931 42 H 0.094 0.906 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.066 0.934 46 H 0.094 0.906 47 H 0.125 0.875 48 H 0.077 0.923 49 H 0.228 0.772 50 H 0.086 0.914 51 H 0.053 0.947 52 H 0.105 0.895 53 H 0.102 0.898 54 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -30.627 -5.650 3.251 31.313 hybrid contribution 1.259 -0.711 -0.312 1.479 sum -29.368 -6.361 2.939 30.192 Atomic orbital electron populations 1.21766 0.95125 1.01803 1.02170 1.21554 0.96441 0.97152 1.01611 1.21587 0.93515 0.96907 1.03033 1.21309 0.95963 0.95128 1.01794 1.21735 0.88829 0.99909 1.06682 1.21479 0.91807 0.83102 0.74318 1.90703 1.71753 1.33178 1.51527 1.46129 1.06567 1.09284 1.74876 1.19882 0.80317 0.98849 0.96235 0.92070 1.20829 0.94851 1.02209 0.97735 1.21787 0.95814 0.98012 1.02114 1.21767 1.00537 0.94571 0.88857 1.61428 1.00353 1.62366 1.02510 1.21640 0.88623 0.96593 1.00218 1.20771 0.83289 0.86545 0.86339 1.90470 1.79573 1.37598 1.42135 1.41946 1.04903 1.35824 1.38748 1.19662 0.87537 1.18203 1.20682 0.90271 1.26020 0.99006 0.97885 0.98365 1.69675 1.17006 1.32795 1.36887 0.84941 0.77247 0.77987 0.78242 1.19618 1.19671 1.19760 1.21782 0.91277 0.98577 0.94711 1.21627 0.94806 0.96461 1.02244 0.92281 0.92370 0.92820 0.92594 0.92730 0.90962 0.90777 0.93056 0.93296 0.86586 0.86267 0.74551 0.93148 0.90588 0.92415 0.91389 0.93369 0.90637 0.87464 0.92312 0.77182 0.91402 0.94727 0.89513 0.89797 0.87777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 71.98 0.71 -0.55 16 2 C -0.13 -1.36 5.93 30.59 0.18 -1.18 16 3 C -0.11 -1.00 5.21 30.59 0.16 -0.84 16 4 C -0.10 -1.38 4.50 30.59 0.14 -1.24 16 5 C -0.13 -1.28 5.70 29.85 0.17 -1.11 16 6 C 0.50 9.15 7.69 87.66 0.67 9.82 16 7 O -0.59 -16.90 15.48 -3.03 -0.05 -16.95 16 8 N -0.72 -10.18 4.98 -450.87 -2.25 -12.43 16 9 C 0.15 2.92 2.01 43.25 0.09 3.01 16 10 H 0.06 1.50 6.87 -2.39 -0.02 1.49 16 11 C -0.12 -2.60 4.77 28.86 0.14 -2.46 16 12 C -0.14 -3.67 5.55 30.21 0.17 -3.50 16 13 C 0.07 2.23 4.59 85.26 0.39 2.62 16 14 N -0.54 -17.15 4.41 -904.81 -3.99 -21.15 16 15 C 0.06 2.16 5.37 85.56 0.46 2.61 16 16 C 0.44 21.36 7.25 87.66 0.64 22.00 16 17 O -0.61 -33.80 14.19 -3.05 -0.04 -33.84 16 18 N -0.58 -30.07 5.29 -306.98 -1.62 -31.69 16 19 C -0.33 -19.02 9.68 84.04 0.81 -18.21 16 20 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 21 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 22 N -0.92 -50.50 13.05 21.66 0.28 -50.22 16 23 Si 0.99 43.42 29.55 68.60 2.03 45.45 16 24 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 25 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 26 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 27 C 0.06 1.45 4.92 85.26 0.42 1.87 16 28 C -0.11 -1.94 5.10 30.21 0.15 -1.79 16 29 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.05 0.86 8.10 -2.39 -0.02 0.84 16 37 H 0.05 0.84 8.10 -2.39 -0.02 0.82 16 38 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.42 3.02 8.61 -92.71 -0.80 2.22 16 41 H 0.05 1.26 7.93 -2.39 -0.02 1.24 16 42 H 0.08 1.51 7.51 -2.39 -0.02 1.49 16 43 H 0.06 1.60 6.61 -2.39 -0.02 1.59 16 44 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.05 1.95 5.89 -2.39 -0.01 1.93 16 46 H 0.08 2.25 6.58 -2.39 -0.02 2.23 16 47 H 0.11 3.36 8.02 -2.39 -0.02 3.34 16 48 H 0.06 1.96 7.65 -2.39 -0.02 1.94 16 49 H 0.39 19.68 7.90 -92.71 -0.73 18.95 16 50 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 51 H 0.03 0.79 6.48 -2.39 -0.02 0.78 16 52 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 53 H 0.08 1.52 7.08 -2.39 -0.02 1.50 16 54 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -74.04 418.46 -0.51 -74.56 By element: Atomic # 1 Polarization: 36.12 SS G_CDS: -0.64 Total: 35.48 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 5.77 Total: 10.80 kcal Atomic # 7 Polarization: -107.91 SS G_CDS: -7.58 Total: -115.48 kcal Atomic # 8 Polarization: -50.70 SS G_CDS: -0.09 Total: -50.79 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -74.04 -0.51 -74.56 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327100507.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.598 kcal (2) G-P(sol) polarization free energy of solvation -74.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds