Wall clock time and date at job start Sat Apr 11 2020 05:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47237 * 2 1 4 4 C 1.53001 * 109.47237 * 179.97438 * 3 2 1 5 5 C 1.52993 * 109.46822 * 59.99936 * 4 3 2 6 6 C 1.53005 * 109.46788 * 300.00181 * 4 3 2 7 7 C 1.50701 * 109.47336 * 180.02562 * 4 3 2 8 8 O 1.21284 * 119.99878 * 350.31361 * 7 4 3 9 9 N 1.34772 * 119.99911 * 170.58808 * 7 4 3 10 10 C 1.47425 * 125.65141 * 3.83481 * 9 7 4 11 11 C 1.55124 * 104.72235 * 155.81890 * 10 9 7 12 12 H 1.09002 * 110.93711 * 155.29207 * 11 10 9 13 13 C 1.52995 * 111.19325 * 279.19153 * 11 10 9 14 14 C 1.55159 * 101.48603 * 37.29807 * 11 10 9 15 15 H 1.09000 * 110.87331 * 82.76868 * 14 11 10 16 16 N 1.46903 * 110.71629 * 205.96795 * 14 11 10 17 17 C 1.46895 * 110.99690 * 199.97341 * 16 14 11 18 18 C 1.50706 * 109.47237 * 180.02562 * 17 16 14 19 19 O 1.21293 * 119.99471 * 359.97438 * 18 17 16 20 20 N 1.34773 * 120.00186 * 179.97438 * 18 17 16 21 21 C 1.37104 * 119.99803 * 179.97438 * 20 18 17 22 22 H 1.08000 * 119.99887 * 0.02562 * 21 20 18 23 23 C 1.38950 * 119.99575 * 180.02562 * 21 20 18 24 24 N 1.31413 * 119.99841 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 120.00489 * 0.02562 * 23 21 20 26 26 H 1.48504 * 109.46881 * 89.99863 * 25 23 21 27 27 H 1.48496 * 109.47329 * 210.00108 * 25 23 21 28 28 H 1.48507 * 109.47017 * 330.00147 * 25 23 21 29 29 C 1.47022 * 125.64409 * 184.14478 * 9 7 4 30 30 H 1.09003 * 109.47287 * 300.00105 * 1 2 3 31 31 H 1.09005 * 109.47216 * 59.99483 * 1 2 3 32 32 H 1.08998 * 109.47610 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46581 * 239.99988 * 2 1 3 34 34 H 1.08998 * 109.46978 * 120.00175 * 2 1 3 35 35 H 1.09003 * 109.47068 * 59.99760 * 3 2 1 36 36 H 1.09005 * 109.47440 * 300.00380 * 3 2 1 37 37 H 1.09002 * 109.46991 * 185.81448 * 5 4 3 38 38 H 1.09000 * 109.47768 * 305.81372 * 5 4 3 39 39 H 1.09003 * 109.47140 * 65.82056 * 5 4 3 40 40 H 1.08998 * 109.47427 * 299.99860 * 6 4 3 41 41 H 1.09004 * 109.47131 * 60.00154 * 6 4 3 42 42 H 1.09004 * 109.46555 * 179.97438 * 6 4 3 43 43 H 1.09006 * 110.36554 * 274.74987 * 10 9 7 44 44 H 1.08997 * 110.36205 * 37.07132 * 10 9 7 45 45 H 1.08996 * 109.47596 * 172.18660 * 13 11 10 46 46 H 1.09002 * 109.47416 * 292.18788 * 13 11 10 47 47 H 1.09000 * 109.47018 * 52.18417 * 13 11 10 48 48 H 1.00905 * 111.00012 * 76.02418 * 16 14 11 49 49 H 1.09003 * 109.47644 * 299.99941 * 17 16 14 50 50 H 1.09000 * 109.47304 * 60.00665 * 17 16 14 51 51 H 0.96998 * 119.99959 * 0.02562 * 20 18 17 52 52 H 0.96994 * 120.00498 * 179.97438 * 24 23 21 53 53 H 1.08994 * 109.88342 * 300.43511 * 29 9 7 54 54 H 1.08999 * 109.88230 * 61.45432 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0805 0.7210 -1.2482 6 6 4.0794 0.7213 1.2503 7 6 4.0724 2.8632 0.0013 8 8 3.2985 3.7802 -0.1755 9 7 5.3826 3.1146 0.1928 10 6 6.4410 2.0981 0.3333 11 6 7.7441 2.8244 -0.0916 12 1 8.6172 2.3554 0.3622 13 6 7.8799 2.8710 -1.6148 14 6 7.5102 4.2439 0.4896 15 1 7.7771 4.2799 1.5458 16 7 8.2672 5.2478 -0.2703 17 6 8.4447 6.4774 0.5134 18 6 9.2231 7.4817 -0.2969 19 8 9.5940 7.2004 -1.4170 20 7 9.5072 8.6922 0.2229 21 6 10.2159 9.6056 -0.5142 22 1 10.5460 9.3552 -1.5115 23 6 10.5092 10.8535 0.0220 24 7 11.1880 11.7292 -0.6846 25 14 9.9387 11.2864 1.7473 26 1 10.9840 10.8953 2.7269 27 1 9.6987 12.7491 1.8368 28 1 8.6799 10.5588 2.0495 29 6 5.9920 4.4481 0.3025 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6767 1.9564 -0.8900 37 1 5.1655 0.6300 -1.1973 38 1 3.6347 -0.2722 -1.3019 39 1 3.8051 1.2914 -2.1354 40 1 3.7158 1.2352 2.1400 41 1 3.7161 -0.3064 1.2502 42 1 5.1695 0.7209 1.2504 43 1 6.5106 1.7635 1.3684 44 1 6.2455 1.2532 -0.3270 45 1 8.7258 3.5030 -1.8851 46 1 8.0431 1.8629 -1.9961 47 1 6.9675 3.2801 -2.0486 48 1 7.8219 5.4436 -1.1543 49 1 7.4685 6.8923 0.7648 50 1 8.9892 6.2490 1.4296 51 1 9.2109 8.9170 1.1188 52 1 11.3924 12.6004 -0.3106 53 1 5.8039 5.0177 -0.6075 54 1 5.5780 4.9753 1.1620 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327906698.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:06 Heat of formation + Delta-G solvation = -95.960648 kcal Electronic energy + Delta-G solvation = -30599.876540 eV Core-core repulsion = 26570.471778 eV Total energy + Delta-G solvation = -4029.404763 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.83174 -40.38762 -39.42146 -37.61824 -36.26905 -35.64940 -33.80142 -33.60341 -32.92252 -30.10947 -28.35784 -28.04668 -27.84953 -27.16585 -25.80304 -24.70878 -23.19744 -21.35344 -21.21624 -20.81170 -20.33153 -19.80828 -17.93135 -17.56935 -17.46151 -16.91711 -16.60758 -16.43981 -16.26989 -15.93910 -15.43081 -15.29905 -15.19534 -15.06551 -14.55146 -14.52667 -14.24676 -14.12553 -14.03714 -13.82098 -13.72521 -13.36136 -13.30312 -13.21030 -13.07316 -12.97625 -12.87873 -12.64496 -12.52525 -12.42807 -12.03825 -12.00689 -11.96124 -11.87723 -11.78521 -11.62797 -11.52363 -11.31332 -11.31123 -10.67709 -10.44489 -10.25978 -9.71798 -9.37915 -8.42501 -6.03443 1.29195 1.34380 1.43197 1.57196 1.89728 1.95138 2.21725 2.70036 3.13635 3.23656 3.44718 3.53019 3.64211 3.74782 3.86342 4.02339 4.11427 4.16505 4.19647 4.20891 4.26345 4.31935 4.40990 4.43009 4.52314 4.58011 4.63503 4.69890 4.72717 4.76089 4.78088 4.83833 4.91770 4.93118 4.97729 5.06355 5.08796 5.12201 5.22012 5.23278 5.24390 5.31711 5.39837 5.46852 5.51072 5.52768 5.54497 5.88452 6.01182 6.23937 6.49043 6.58067 6.86701 7.10150 7.38293 7.94725 8.75110 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.021831 B = 0.002072 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.247662 B =13510.856456 C =14107.179010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C -0.093 4.093 4 C -0.071 4.071 5 C -0.146 4.146 6 C -0.154 4.154 7 C 0.526 3.474 8 O -0.596 6.596 9 N -0.607 5.607 10 C 0.091 3.909 11 C -0.087 4.087 12 H 0.118 0.882 13 C -0.139 4.139 14 C 0.086 3.914 15 H 0.120 0.880 16 N -0.661 5.661 17 C 0.058 3.942 18 C 0.448 3.552 19 O -0.614 6.614 20 N -0.591 5.591 21 C -0.329 4.329 22 H 0.055 0.945 23 C -0.015 4.015 24 N -0.934 5.934 25 Si 0.965 3.035 26 H -0.254 1.254 27 H -0.276 1.276 28 H -0.234 1.234 29 C 0.078 3.922 30 H 0.048 0.952 31 H 0.045 0.955 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.048 0.952 36 H 0.045 0.955 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.041 0.959 40 H 0.050 0.950 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.104 0.896 44 H 0.107 0.893 45 H 0.053 0.947 46 H 0.073 0.927 47 H 0.031 0.969 48 H 0.343 0.657 49 H 0.070 0.930 50 H 0.124 0.876 51 H 0.390 0.610 52 H 0.279 0.721 53 H 0.039 0.961 54 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.611 -30.317 10.426 36.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.157 4.157 3 C -0.131 4.131 4 C -0.074 4.074 5 C -0.203 4.203 6 C -0.210 4.210 7 C 0.316 3.684 8 O -0.477 6.477 9 N -0.340 5.340 10 C -0.030 4.030 11 C -0.106 4.106 12 H 0.136 0.864 13 C -0.196 4.196 14 C -0.025 4.025 15 H 0.138 0.862 16 N -0.292 5.292 17 C -0.074 4.074 18 C 0.236 3.764 19 O -0.498 6.498 20 N -0.233 5.233 21 C -0.458 4.458 22 H 0.073 0.927 23 C -0.214 4.214 24 N -0.574 5.574 25 Si 0.785 3.215 26 H -0.178 1.178 27 H -0.201 1.201 28 H -0.157 1.157 29 C -0.048 4.048 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.099 0.901 38 H 0.115 0.885 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.111 0.889 42 H 0.105 0.895 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.072 0.928 46 H 0.092 0.908 47 H 0.050 0.950 48 H 0.163 0.837 49 H 0.087 0.913 50 H 0.142 0.858 51 H 0.225 0.775 52 H 0.089 0.911 53 H 0.058 0.942 54 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.116 -30.079 9.710 35.479 hybrid contribution -1.044 2.117 0.118 2.364 sum -17.160 -27.962 9.828 34.248 Atomic orbital electron populations 1.21791 0.95968 1.02142 1.01366 1.21661 0.95791 0.94804 1.03461 1.21404 0.92251 0.98153 1.01331 1.20765 0.96953 0.89739 0.99937 1.22083 1.02565 1.01361 0.94301 1.22242 1.03295 1.01404 0.94105 1.21168 0.80302 0.92320 0.74610 1.90680 1.56386 1.48861 1.51732 1.48415 1.06563 1.08085 1.70907 1.23212 0.84732 0.91579 1.03441 1.22461 0.98144 0.93410 0.96577 0.86378 1.21601 1.00911 1.02295 0.94799 1.22849 0.87152 0.92938 0.99581 0.86233 1.60284 1.53305 1.09502 1.06079 1.21737 0.99337 0.89332 0.97022 1.20981 0.84104 0.83249 0.88082 1.90548 1.57693 1.78965 1.22600 1.42032 1.51121 1.13420 1.16678 1.19010 1.31799 0.95027 1.00011 0.92669 1.26119 0.96490 0.94657 1.04117 1.69802 1.39948 1.07590 1.40100 0.85366 0.80301 0.78881 0.76970 1.17836 1.20140 1.15695 1.22776 0.95754 0.85793 1.00443 0.93269 0.93577 0.91396 0.90466 0.90067 0.93286 0.93655 0.90109 0.88543 0.94019 0.93097 0.88912 0.89458 0.87861 0.87570 0.92778 0.90774 0.95000 0.83724 0.91254 0.85795 0.77485 0.91146 0.94210 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.91 71.98 0.71 -0.94 16 2 C -0.12 -1.19 5.24 30.59 0.16 -1.03 16 3 C -0.09 -1.54 3.62 30.59 0.11 -1.43 16 4 C -0.07 -1.03 0.52 -52.93 -0.03 -1.06 16 5 C -0.15 -1.59 8.10 71.98 0.58 -1.01 16 6 C -0.15 -1.30 7.81 71.98 0.56 -0.74 16 7 C 0.53 12.26 6.58 87.66 0.58 12.84 16 8 O -0.60 -20.16 16.31 -3.04 -0.05 -20.21 16 9 N -0.61 -11.58 3.28 -811.36 -2.66 -14.24 16 10 C 0.09 0.98 4.38 86.93 0.38 1.36 16 11 C -0.09 -1.22 3.63 -9.33 -0.03 -1.26 16 12 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 13 C -0.14 -2.56 8.43 71.98 0.61 -1.95 16 14 C 0.09 1.59 3.04 46.11 0.14 1.73 16 15 H 0.12 1.72 7.89 -2.39 -0.02 1.70 16 16 N -0.66 -18.12 4.94 -489.43 -2.42 -20.54 16 17 C 0.06 1.70 6.02 85.56 0.52 2.22 16 18 C 0.45 20.10 7.82 87.66 0.69 20.78 16 19 O -0.61 -33.94 15.78 -3.07 -0.05 -33.99 16 20 N -0.59 -27.92 5.09 -306.98 -1.56 -29.49 16 21 C -0.33 -19.44 10.16 84.04 0.85 -18.58 16 22 H 0.06 3.88 7.39 -2.91 -0.02 3.86 16 23 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 24 N -0.93 -56.71 13.96 21.66 0.30 -56.41 16 25 Si 0.96 39.08 27.74 68.60 1.90 40.99 16 26 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 27 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 28 H -0.23 -8.02 6.52 99.48 0.65 -7.37 16 29 C 0.08 1.73 6.20 86.73 0.54 2.27 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.08 0.61 6.31 -2.39 -0.02 0.59 16 34 H 0.08 0.57 6.43 -2.39 -0.02 0.55 16 35 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.04 0.96 7.99 -2.38 -0.02 0.94 16 37 H 0.08 0.65 5.09 -2.39 -0.01 0.63 16 38 H 0.10 0.62 6.14 -2.39 -0.01 0.60 16 39 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.09 0.42 6.43 -2.39 -0.02 0.40 16 42 H 0.09 0.48 4.16 -2.39 -0.01 0.47 16 43 H 0.10 0.62 6.91 -2.38 -0.02 0.60 16 44 H 0.11 0.79 4.41 -2.39 -0.01 0.78 16 45 H 0.05 1.32 7.35 -2.39 -0.02 1.30 16 46 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.03 0.69 7.91 -2.39 -0.02 0.67 16 48 H 0.34 10.92 7.18 -89.69 -0.64 10.28 16 49 H 0.07 1.77 8.13 -2.39 -0.02 1.75 16 50 H 0.12 2.87 8.08 -2.39 -0.02 2.86 16 51 H 0.39 15.22 5.76 -92.71 -0.53 14.69 16 52 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 53 H 0.04 1.12 7.57 -2.39 -0.02 1.10 16 54 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -84.02 407.51 1.97 -82.05 By element: Atomic # 1 Polarization: 39.35 SS G_CDS: -0.32 Total: 39.02 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: 6.83 Total: 12.81 kcal Atomic # 7 Polarization: -114.34 SS G_CDS: -6.34 Total: -120.68 kcal Atomic # 8 Polarization: -54.09 SS G_CDS: -0.10 Total: -54.19 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 1.90 Total: 40.99 kcal Total: -84.02 1.97 -82.05 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327906698.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.913 kcal (2) G-P(sol) polarization free energy of solvation -84.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds