Wall clock time and date at job start Sat Apr 11 2020 05:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36932 * 119.99627 * 2 1 4 4 H 1.07999 * 119.99919 * 157.16312 * 3 2 1 5 5 C 1.38810 * 120.00148 * 336.88445 * 3 2 1 6 6 N 1.31614 * 120.00119 * 347.63580 * 5 3 2 7 7 Si 1.86803 * 119.99762 * 167.63530 * 5 3 2 8 8 H 1.48496 * 109.47241 * 359.97438 * 7 5 3 9 9 H 1.48501 * 109.47189 * 120.00452 * 7 5 3 10 10 H 1.48498 * 109.47067 * 239.99673 * 7 5 3 11 11 C 1.46500 * 119.99963 * 179.97438 * 2 1 3 12 12 C 1.53002 * 109.46880 * 264.34284 * 11 2 1 13 13 H 1.09001 * 109.87480 * 306.74000 * 12 11 2 14 14 C 1.54325 * 109.88421 * 67.75042 * 12 11 2 15 15 C 1.55401 * 102.82731 * 141.51488 * 14 12 11 16 16 C 1.54903 * 101.66718 * 324.66382 * 15 14 12 17 17 N 1.47024 * 109.88163 * 185.72056 * 12 11 2 18 18 C 1.34773 * 125.64931 * 61.60415 * 17 12 11 19 19 O 1.21284 * 119.99812 * 5.11470 * 18 17 12 20 20 C 1.50697 * 119.99854 * 185.10921 * 18 17 12 21 21 N 1.46505 * 109.46947 * 180.02562 * 20 18 17 22 22 C 1.34776 * 119.99996 * 179.97438 * 21 20 18 23 23 O 1.21285 * 120.00120 * 359.97438 * 22 21 20 24 24 C 1.50703 * 120.00154 * 179.97438 * 22 21 20 25 25 C 1.52994 * 109.47173 * 180.02562 * 24 22 21 26 26 C 1.53003 * 109.47205 * 60.00265 * 25 24 22 27 27 C 1.52998 * 109.47000 * 179.97438 * 25 24 22 28 28 C 1.52996 * 109.47218 * 300.00319 * 25 24 22 29 29 H 1.09005 * 109.47353 * 84.78249 * 1 2 3 30 30 H 1.09000 * 109.47042 * 204.77707 * 1 2 3 31 31 H 1.08996 * 109.47809 * 324.78109 * 1 2 3 32 32 H 0.97002 * 119.99985 * 179.97438 * 6 5 3 33 33 H 1.08991 * 109.46988 * 24.34112 * 11 2 1 34 34 H 1.08994 * 109.46969 * 144.34487 * 11 2 1 35 35 H 1.08995 * 110.71934 * 259.97368 * 14 12 11 36 36 H 1.09007 * 110.71459 * 23.24635 * 14 12 11 37 37 H 1.09004 * 111.03766 * 206.53091 * 15 14 12 38 38 H 1.09000 * 110.92150 * 82.75219 * 15 14 12 39 39 H 1.09000 * 110.36901 * 278.08280 * 16 15 14 40 40 H 1.09006 * 110.36746 * 155.75994 * 16 15 14 41 41 H 1.09003 * 109.47038 * 299.99797 * 20 18 17 42 42 H 1.08996 * 109.47663 * 60.00334 * 20 18 17 43 43 H 0.97000 * 119.99954 * 359.97438 * 21 20 18 44 44 H 1.09001 * 109.46701 * 300.00574 * 24 22 21 45 45 H 1.08996 * 109.46721 * 59.99674 * 24 22 21 46 46 H 1.09005 * 109.47091 * 59.99714 * 26 25 24 47 47 H 1.08999 * 109.47192 * 180.02562 * 26 25 24 48 48 H 1.09001 * 109.46930 * 299.99777 * 26 25 24 49 49 H 1.08999 * 109.47220 * 60.00293 * 27 25 24 50 50 H 1.09005 * 109.47225 * 180.02562 * 27 25 24 51 51 H 1.08997 * 109.47560 * 300.00286 * 27 25 24 52 52 H 1.09001 * 109.47396 * 59.99929 * 28 25 24 53 53 H 1.09005 * 109.47009 * 180.02562 * 28 25 24 54 54 H 1.08999 * 109.46894 * 299.99641 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1661 1.2226 0.3630 5 6 1.5390 2.3398 -0.4719 6 7 0.4071 2.2598 -1.1387 7 14 2.3241 4.0060 -0.1606 8 1 3.5824 3.8248 0.6067 9 1 2.6252 4.6616 -1.4586 10 1 1.3882 4.8564 0.6179 11 6 2.1975 -1.2687 0.0006 12 6 2.5756 -1.6386 1.4362 13 1 3.1035 -0.8087 1.9060 14 6 1.3043 -1.9760 2.2435 15 6 1.7641 -3.1672 3.1292 16 6 2.7369 -3.9077 2.1780 17 7 3.4273 -2.8370 1.4360 18 6 4.6382 -2.9400 0.8533 19 8 5.1519 -1.9654 0.3462 20 6 5.3538 -4.2661 0.8320 21 7 6.6402 -4.1158 0.1473 22 6 7.4577 -5.1782 0.0081 23 8 7.1286 -6.2586 0.4501 24 6 8.7808 -5.0238 -0.6967 25 6 9.5073 -6.3700 -0.7182 26 6 8.6519 -7.3995 -1.4594 27 6 10.8503 -6.2133 -1.4343 28 6 9.7462 -6.8437 0.7168 29 1 -0.3634 0.0935 -1.0234 30 1 -0.3633 -0.9331 0.4307 31 1 -0.3634 0.8395 0.5926 32 1 -0.0197 3.0662 -1.4682 33 1 1.5683 -2.0517 -0.4226 34 1 3.1022 -1.1661 -0.5985 35 1 1.0022 -1.1287 2.8590 36 1 0.4951 -2.2796 1.5793 37 1 0.9207 -3.8034 3.3980 38 1 2.2827 -2.8126 4.0199 39 1 2.1827 -4.5482 1.4920 40 1 3.4542 -4.4952 2.7512 41 1 5.5240 -4.6035 1.8544 42 1 4.7443 -4.9994 0.3040 43 1 6.9036 -3.2516 -0.2059 44 1 8.6105 -4.6867 -1.7192 45 1 9.3900 -4.2900 -0.1690 46 1 8.4817 -7.0620 -2.4818 47 1 9.1693 -8.3587 -1.4743 48 1 7.6949 -7.5112 -0.9496 49 1 11.4600 -5.4799 -0.9068 50 1 11.3678 -7.1726 -1.4501 51 1 10.6798 -5.8761 -2.4567 52 1 8.7892 -6.9554 1.2266 53 1 10.2642 -7.8027 0.7015 54 1 10.3557 -6.1103 1.2448 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328799203.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:31 Heat of formation + Delta-G solvation = -75.650536 kcal Electronic energy + Delta-G solvation = -30615.734255 eV Core-core repulsion = 26587.210205 eV Total energy + Delta-G solvation = -4028.524050 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.57250 -40.87140 -38.87654 -37.49156 -37.13211 -35.41770 -33.62306 -32.70761 -30.95162 -30.13633 -28.06021 -28.03725 -28.00396 -27.64525 -26.81063 -24.12164 -22.79198 -22.05270 -21.58958 -20.36468 -19.67196 -18.74098 -18.42271 -17.82445 -17.22861 -17.07391 -16.85418 -16.49693 -15.97787 -15.69936 -15.48864 -15.25054 -15.17740 -15.12183 -15.00090 -14.47806 -14.30872 -13.98379 -13.83958 -13.69943 -13.62278 -13.15691 -13.00716 -12.92400 -12.91641 -12.81981 -12.64041 -12.58611 -12.39059 -12.19778 -12.14239 -12.04912 -12.01037 -11.92238 -11.61798 -11.60400 -11.51077 -11.49674 -10.98430 -10.67980 -10.51435 -10.15068 -9.76109 -8.75102 -7.85295 -5.34825 1.41338 1.42436 1.47252 1.53891 1.64383 1.69816 2.35254 2.49622 3.26271 3.34760 3.65065 3.72185 3.78569 3.84776 3.92633 3.96200 4.04375 4.23379 4.28468 4.36083 4.37160 4.43228 4.49354 4.62375 4.65894 4.69158 4.70955 4.83346 4.87303 4.88609 4.89828 4.97665 5.02090 5.06753 5.11755 5.12425 5.15702 5.17126 5.20383 5.30427 5.34878 5.39920 5.42208 5.48951 5.56857 5.60947 5.68996 5.71581 6.30046 6.47167 6.52547 7.03517 7.14166 7.22495 7.84595 8.26244 9.16818 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014152 B = 0.002407 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.045314 B =11627.735989 C =12953.365702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.611 5.611 3 C -0.256 4.256 4 H 0.055 0.945 5 C -0.051 4.051 6 N -0.936 5.936 7 Si 0.966 3.034 8 H -0.274 1.274 9 H -0.291 1.291 10 H -0.284 1.284 11 C 0.152 3.848 12 C 0.125 3.875 13 H 0.038 0.962 14 C -0.112 4.112 15 C -0.121 4.121 16 C 0.091 3.909 17 N -0.608 5.608 18 C 0.513 3.487 19 O -0.577 6.577 20 C 0.117 3.883 21 N -0.723 5.723 22 C 0.516 3.484 23 O -0.556 6.556 24 C -0.132 4.132 25 C -0.052 4.052 26 C -0.151 4.151 27 C -0.139 4.139 28 C -0.151 4.151 29 H 0.000 1.000 30 H 0.041 0.959 31 H 0.017 0.983 32 H 0.249 0.751 33 H 0.051 0.949 34 H 0.020 0.980 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.113 0.887 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.112 0.888 42 H 0.109 0.891 43 H 0.412 0.588 44 H 0.107 0.893 45 H 0.109 0.891 46 H 0.051 0.949 47 H 0.054 0.946 48 H 0.062 0.938 49 H 0.062 0.938 50 H 0.060 0.940 51 H 0.061 0.939 52 H 0.062 0.938 53 H 0.053 0.947 54 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.010 -21.131 6.471 25.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.335 5.335 3 C -0.387 4.387 4 H 0.073 0.927 5 C -0.246 4.246 6 N -0.583 5.583 7 Si 0.794 3.206 8 H -0.199 1.199 9 H -0.218 1.218 10 H -0.210 1.210 11 C 0.025 3.975 12 C 0.019 3.981 13 H 0.056 0.944 14 C -0.150 4.150 15 C -0.159 4.159 16 C -0.030 4.030 17 N -0.342 5.342 18 C 0.302 3.698 19 O -0.456 6.456 20 C -0.010 4.010 21 N -0.378 5.378 22 C 0.305 3.695 23 O -0.436 6.436 24 C -0.171 4.171 25 C -0.052 4.052 26 C -0.209 4.209 27 C -0.196 4.196 28 C -0.208 4.208 29 H 0.018 0.982 30 H 0.060 0.940 31 H 0.035 0.965 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.039 0.961 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.132 0.868 38 H 0.095 0.905 39 H 0.107 0.893 40 H 0.121 0.879 41 H 0.130 0.870 42 H 0.126 0.874 43 H 0.250 0.750 44 H 0.125 0.875 45 H 0.127 0.873 46 H 0.070 0.930 47 H 0.073 0.927 48 H 0.081 0.919 49 H 0.081 0.919 50 H 0.079 0.921 51 H 0.080 0.920 52 H 0.081 0.919 53 H 0.073 0.927 54 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.001 -21.273 6.421 25.745 hybrid contribution 0.194 1.965 -0.404 2.015 sum 13.195 -19.308 6.017 24.148 Atomic orbital electron populations 1.20609 0.81989 0.96403 0.97551 1.43993 1.02281 1.00996 1.86214 1.19354 0.97806 0.86946 1.34563 0.92730 1.25734 0.98660 1.01677 0.98514 1.70226 1.20330 1.27558 1.40227 0.85227 0.77934 0.80254 0.77194 1.19875 1.21752 1.21027 1.20995 0.94739 0.87446 0.94316 1.22159 0.91319 0.86485 0.98112 0.94398 1.22590 0.95116 0.99279 0.98043 1.22850 0.99744 0.96187 0.97070 1.22727 0.96129 0.89538 0.94600 1.48650 1.16869 1.15175 1.53503 1.20696 0.80609 0.90829 0.77664 1.90734 1.66441 1.40631 1.47833 1.20993 0.85859 0.93288 1.00852 1.45953 1.18535 1.13991 1.59282 1.21122 0.86476 0.82877 0.79032 1.90576 1.76075 1.26636 1.50274 1.21863 0.92349 1.00376 1.02532 1.20294 0.95405 0.93145 0.96390 1.22067 1.00856 0.98421 0.99514 1.21865 0.95143 1.02319 1.00308 1.22058 1.02251 1.00778 0.95681 0.98156 0.94043 0.96457 0.94153 0.93068 0.96148 0.91256 0.90395 0.86825 0.90456 0.89268 0.87862 0.87018 0.87368 0.75046 0.87467 0.87253 0.93032 0.92716 0.91929 0.91904 0.92082 0.92042 0.91888 0.92748 0.92883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.77 8.62 127.77 1.10 9.87 16 2 N -0.61 -31.62 2.80 -726.96 -2.04 -33.65 16 3 C -0.26 -14.89 9.65 84.03 0.81 -14.08 16 4 H 0.05 3.27 7.86 -2.91 -0.02 3.24 16 5 C -0.05 -2.96 5.11 84.86 0.43 -2.53 16 6 N -0.94 -56.65 10.68 21.65 0.23 -56.41 16 7 Si 0.97 47.07 29.57 68.60 2.03 49.10 16 8 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 9 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 10 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 11 C 0.15 6.62 5.09 86.38 0.44 7.06 16 12 C 0.13 4.40 3.05 45.34 0.14 4.54 16 13 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 14 C -0.11 -3.03 5.76 31.87 0.18 -2.85 16 15 C -0.12 -2.05 7.09 32.07 0.23 -1.82 16 16 C 0.09 1.54 6.65 86.85 0.58 2.12 16 17 N -0.61 -16.75 3.07 -788.05 -2.42 -19.16 16 18 C 0.51 15.10 7.63 87.66 0.67 15.77 16 19 O -0.58 -22.49 14.84 -3.04 -0.05 -22.54 16 20 C 0.12 2.48 5.25 85.63 0.45 2.93 16 21 N -0.72 -15.54 5.53 -466.78 -2.58 -18.12 16 22 C 0.52 10.57 7.24 87.66 0.63 11.21 16 23 O -0.56 -13.74 11.35 -3.04 -0.03 -13.77 16 24 C -0.13 -1.97 4.77 29.85 0.14 -1.83 16 25 C -0.05 -0.79 0.77 -52.18 -0.04 -0.83 16 26 C -0.15 -2.61 8.17 71.98 0.59 -2.02 16 27 C -0.14 -1.60 8.47 71.98 0.61 -0.99 16 28 C -0.15 -2.51 8.18 71.98 0.59 -1.92 16 29 H 0.00 0.01 7.33 -2.38 -0.02 -0.01 16 30 H 0.04 1.64 6.27 -2.39 -0.01 1.62 16 31 H 0.02 0.89 7.34 -2.39 -0.02 0.88 16 32 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 33 H 0.05 2.03 7.89 -2.39 -0.02 2.01 16 34 H 0.02 1.01 6.81 -2.39 -0.02 0.99 16 35 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.08 2.08 6.31 -2.38 -0.02 2.07 16 37 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 38 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.10 1.20 7.51 -2.38 -0.02 1.18 16 41 H 0.11 1.99 7.77 -2.39 -0.02 1.97 16 42 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.41 9.26 7.44 -92.71 -0.69 8.57 16 44 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 47 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.06 1.37 5.51 -2.39 -0.01 1.36 16 49 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 50 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 51 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 52 H 0.06 1.35 5.51 -2.39 -0.01 1.33 16 53 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 54 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -75.10 414.67 2.89 -72.22 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 0.18 Total: 17.71 kcal Atomic # 6 Polarization: 17.08 SS G_CDS: 7.56 Total: 24.64 kcal Atomic # 7 Polarization: -120.55 SS G_CDS: -6.80 Total: -127.35 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -0.08 Total: -36.31 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -75.10 2.89 -72.22 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328799203.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.435 kcal (2) G-P(sol) polarization free energy of solvation -75.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds