Wall clock time and date at job start Sat Apr 11 2020 05:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47198 * 2 1 4 4 C 1.52996 * 109.47067 * 59.99702 * 3 2 1 5 5 C 1.53000 * 109.47117 * 300.00023 * 3 2 1 6 6 C 1.53005 * 109.47017 * 179.97438 * 3 2 1 7 7 H 1.08993 * 109.46945 * 299.99792 * 6 3 2 8 8 C 1.52997 * 109.46993 * 60.00331 * 6 3 2 9 9 N 1.46506 * 109.46829 * 180.02562 * 6 3 2 10 10 C 1.34773 * 119.99762 * 155.00239 * 9 6 3 11 11 O 1.21343 * 120.00013 * 359.97438 * 10 9 6 12 12 C 1.49454 * 119.99812 * 179.97438 * 10 9 6 13 13 O 1.21350 * 119.99594 * 0.02562 * 12 10 9 14 14 N 1.34771 * 119.99714 * 179.72358 * 12 10 9 15 15 C 1.46506 * 119.99666 * 180.02562 * 14 12 10 16 16 C 1.53043 * 109.45812 * 275.02478 * 15 14 12 17 17 C 1.53185 * 109.31440 * 178.60083 * 16 15 14 18 18 N 1.46928 * 108.76286 * 54.65553 * 17 16 15 19 19 C 1.36939 * 120.62846 * 126.40965 * 18 17 16 20 20 H 1.08007 * 119.99940 * 331.82352 * 19 18 17 21 21 C 1.38813 * 120.00227 * 151.82640 * 19 18 17 22 22 N 1.31617 * 119.99816 * 343.06815 * 21 19 18 23 23 Si 1.86796 * 120.00230 * 163.06409 * 21 19 18 24 24 H 1.48508 * 109.47036 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47260 * 120.00236 * 23 21 19 26 26 H 1.48503 * 109.47317 * 240.00631 * 23 21 19 27 27 C 1.46923 * 118.73968 * 306.38300 * 18 17 16 28 28 C 1.53032 * 109.46013 * 154.97494 * 15 14 12 29 29 H 1.08997 * 109.47728 * 300.00104 * 1 2 3 30 30 H 1.09002 * 109.46861 * 60.00196 * 1 2 3 31 31 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46996 * 239.99906 * 2 1 3 33 33 H 1.08999 * 109.47201 * 120.00181 * 2 1 3 34 34 H 1.09001 * 109.47257 * 180.02562 * 4 3 2 35 35 H 1.08999 * 109.47401 * 300.00079 * 4 3 2 36 36 H 1.09002 * 109.47197 * 60.00071 * 4 3 2 37 37 H 1.08998 * 109.47226 * 299.99578 * 5 3 2 38 38 H 1.08999 * 109.47183 * 60.00024 * 5 3 2 39 39 H 1.09001 * 109.47022 * 179.97438 * 5 3 2 40 40 H 1.08999 * 109.47137 * 179.97438 * 8 6 3 41 41 H 1.09001 * 109.47159 * 299.99699 * 8 6 3 42 42 H 1.09002 * 109.47559 * 59.99790 * 8 6 3 43 43 H 0.97003 * 119.99472 * 334.99312 * 9 6 3 44 44 H 0.96998 * 120.00353 * 0.02562 * 14 12 10 45 45 H 1.08995 * 109.46008 * 34.99704 * 15 14 12 46 46 H 1.09002 * 109.49671 * 298.56907 * 16 15 14 47 47 H 1.09004 * 109.49697 * 58.66345 * 16 15 14 48 48 H 1.08997 * 109.60233 * 294.87089 * 17 16 15 49 49 H 1.08999 * 109.70777 * 174.50277 * 17 16 15 50 50 H 0.97003 * 120.00148 * 179.97438 * 22 21 19 51 51 H 1.09000 * 109.58752 * 293.81754 * 27 18 17 52 52 H 1.09003 * 109.70286 * 173.46537 * 27 18 17 53 53 H 1.09003 * 109.49789 * 301.32892 * 28 15 14 54 54 H 1.09002 * 109.50329 * 61.39617 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5299 2.1637 1.2492 5 6 1.5300 2.1637 -1.2492 6 6 3.5700 1.4424 0.0006 7 1 3.9329 0.9288 0.8908 8 6 4.0805 0.7210 -1.2483 9 7 4.0584 2.8237 0.0013 10 6 5.2801 3.1062 0.4951 11 8 5.9754 2.2166 0.9396 12 6 5.7785 4.5152 0.4952 13 8 5.0829 5.4048 0.0511 14 7 6.9980 4.7985 0.9941 15 6 7.4863 6.1798 0.9948 16 6 8.1277 6.4944 -0.3587 17 6 8.6057 7.9497 -0.3668 18 7 9.4928 8.1622 0.7850 19 6 10.7478 8.6823 0.6124 20 1 11.2737 8.5264 -0.3180 21 6 11.3440 9.4098 1.6333 22 7 10.6108 9.8855 2.6173 23 14 13.1870 9.7135 1.6105 24 1 13.7785 9.0787 0.4052 25 1 13.4475 11.1751 1.5777 26 1 13.8003 9.1286 2.8299 27 6 9.0076 7.8066 2.1254 28 6 8.5248 6.3529 2.1054 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.8929 3.1915 1.2490 35 1 0.4400 2.1637 1.2492 36 1 1.8932 1.6499 2.1392 37 1 1.8934 1.6499 -2.1392 38 1 0.4400 2.1637 -1.2492 39 1 1.8930 3.1915 -1.2490 40 1 5.1705 0.7214 -1.2481 41 1 3.7172 -0.3066 -1.2483 42 1 3.7175 1.2347 -2.1385 43 1 3.5023 3.5348 -0.3539 44 1 7.5524 4.0880 1.3528 45 1 6.6523 6.8597 1.1682 46 1 8.9773 5.8312 -0.5216 47 1 7.3942 6.3482 -1.1517 48 1 7.7470 8.6171 -0.2946 49 1 9.1497 8.1528 -1.2893 50 1 11.0275 10.3936 3.3309 51 1 8.1816 8.4624 2.4009 52 1 9.8158 7.9133 2.8491 53 1 8.0740 6.1061 3.0667 54 1 9.3704 5.6907 1.9194 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328904879.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:43 Heat of formation + Delta-G solvation = -88.739241 kcal Electronic energy + Delta-G solvation = -30565.817709 eV Core-core repulsion = 26536.726090 eV Total energy + Delta-G solvation = -4029.091619 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.94503 -40.53644 -39.27807 -38.76578 -36.27607 -35.21376 -33.91972 -31.87122 -31.62751 -31.23004 -30.59584 -28.27647 -27.42321 -25.93657 -25.26853 -24.01856 -23.73922 -22.64017 -21.41118 -21.10801 -20.01504 -19.05839 -18.56315 -18.00164 -17.07460 -17.00487 -16.63588 -16.56779 -15.88935 -15.71095 -15.46801 -15.38041 -15.29643 -15.04867 -14.98367 -14.77327 -14.43482 -14.19289 -14.13021 -13.51036 -13.24196 -13.11192 -13.05495 -13.03157 -12.86727 -12.77432 -12.65647 -12.63416 -12.55218 -12.48492 -12.22680 -12.02235 -11.89034 -11.83849 -11.60468 -11.50984 -11.38753 -11.34249 -11.29052 -10.67090 -10.57446 -10.29308 -10.18953 -8.71545 -7.88543 -5.33909 0.32738 1.29367 1.47422 1.49580 1.59894 2.12531 2.51515 2.60107 3.27598 3.39240 3.56491 3.65461 3.80086 3.82900 3.86060 3.97849 4.27270 4.29498 4.31397 4.38386 4.42996 4.58733 4.62415 4.63213 4.69153 4.72170 4.79682 4.81230 4.81782 4.92251 4.94824 5.00963 5.01565 5.04210 5.11755 5.13719 5.17974 5.21340 5.26757 5.27254 5.30750 5.34051 5.36053 5.45675 5.56130 5.61507 5.64302 5.69293 5.94085 6.34700 6.38943 6.72610 6.93359 7.14018 7.83428 8.35830 9.18738 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.034216 B = 0.001924 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.137288 B =14546.109784 C =14597.556271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.111 4.111 3 C -0.064 4.064 4 C -0.147 4.147 5 C -0.151 4.151 6 C 0.147 3.853 7 H 0.079 0.921 8 C -0.165 4.165 9 N -0.682 5.682 10 C 0.513 3.487 11 O -0.541 6.541 12 C 0.503 3.497 13 O -0.545 6.545 14 N -0.683 5.683 15 C 0.160 3.840 16 C -0.126 4.126 17 C 0.146 3.854 18 N -0.609 5.609 19 C -0.262 4.262 20 H 0.068 0.932 21 C -0.050 4.050 22 N -0.935 5.935 23 Si 0.967 3.033 24 H -0.267 1.267 25 H -0.293 1.293 26 H -0.289 1.289 27 C 0.179 3.821 28 C -0.132 4.132 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.051 0.949 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.049 0.951 40 H 0.041 0.959 41 H 0.089 0.911 42 H 0.071 0.929 43 H 0.415 0.585 44 H 0.417 0.583 45 H 0.072 0.928 46 H 0.065 0.935 47 H 0.066 0.934 48 H 0.014 0.986 49 H 0.060 0.940 50 H 0.251 0.749 51 H 0.000 1.000 52 H 0.063 0.937 53 H 0.077 0.923 54 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.546 -21.957 -5.990 30.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.149 4.149 3 C -0.065 4.065 4 C -0.204 4.204 5 C -0.208 4.208 6 C 0.044 3.956 7 H 0.097 0.903 8 C -0.223 4.223 9 N -0.336 5.336 10 C 0.293 3.707 11 O -0.418 6.418 12 C 0.284 3.716 13 O -0.423 6.423 14 N -0.335 5.335 15 C 0.056 3.944 16 C -0.166 4.166 17 C 0.019 3.981 18 N -0.333 5.333 19 C -0.392 4.392 20 H 0.085 0.915 21 C -0.245 4.245 22 N -0.581 5.581 23 Si 0.796 3.204 24 H -0.191 1.191 25 H -0.221 1.221 26 H -0.216 1.216 27 C 0.053 3.947 28 C -0.171 4.171 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.108 0.892 42 H 0.090 0.910 43 H 0.254 0.746 44 H 0.254 0.746 45 H 0.090 0.910 46 H 0.083 0.917 47 H 0.085 0.915 48 H 0.032 0.968 49 H 0.078 0.922 50 H 0.060 0.940 51 H 0.018 0.982 52 H 0.082 0.918 53 H 0.096 0.904 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -20.498 -21.866 -5.878 30.542 hybrid contribution 1.125 0.795 0.357 1.423 sum -19.373 -21.071 -5.521 29.151 Atomic orbital electron populations 1.21877 0.94929 1.02023 1.02334 1.21591 0.96701 0.93784 1.02785 1.20786 0.91422 0.97536 0.96711 1.21959 1.02071 0.99726 0.96641 1.22052 1.02312 0.99673 0.96772 1.21269 0.94333 0.80207 0.99824 0.90279 1.22281 1.00772 1.01806 0.97425 1.45966 1.15847 1.11757 1.59994 1.19996 0.83253 0.88368 0.79063 1.90745 1.56639 1.48029 1.46435 1.20371 0.82659 0.89450 0.79141 1.90748 1.56785 1.48444 1.46307 1.45981 1.16711 1.11049 1.59736 1.20884 0.96186 0.81136 0.96184 1.22210 0.99842 0.98189 0.96362 1.20964 0.92742 0.93420 0.90930 1.44352 1.13464 1.73012 1.02450 1.19542 0.91830 1.26168 1.01650 0.91470 1.25801 1.02315 0.97482 0.98907 1.70177 1.35217 1.38546 1.14122 0.85211 0.80660 0.76923 0.77650 1.19134 1.22062 1.21559 1.20557 0.96632 0.90036 0.87487 1.22300 0.97777 0.99513 0.97544 0.92516 0.91918 0.92327 0.90534 0.91884 0.93526 0.90773 0.92997 0.91238 0.90764 0.93211 0.93960 0.89192 0.91030 0.74609 0.74614 0.90959 0.91656 0.91512 0.96846 0.92174 0.94014 0.98205 0.91829 0.90446 0.91314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.21 71.98 0.66 -0.42 16 2 C -0.11 -0.91 4.64 30.59 0.14 -0.77 16 3 C -0.06 -0.68 0.37 -52.18 -0.02 -0.70 16 4 C -0.15 -1.77 7.96 71.98 0.57 -1.20 16 5 C -0.15 -1.40 7.60 71.98 0.55 -0.86 16 6 C 0.15 2.21 1.85 44.99 0.08 2.29 16 7 H 0.08 1.43 7.58 -2.39 -0.02 1.41 16 8 C -0.17 -2.21 8.78 71.98 0.63 -1.58 16 9 N -0.68 -12.94 4.30 -443.87 -1.91 -14.85 16 10 C 0.51 12.81 7.85 87.27 0.69 13.50 16 11 O -0.54 -15.40 16.14 -3.23 -0.05 -15.45 16 12 C 0.50 14.37 7.85 87.27 0.69 15.05 16 13 O -0.55 -17.78 16.14 -3.25 -0.05 -17.83 16 14 N -0.68 -19.44 5.07 -443.74 -2.25 -21.69 16 15 C 0.16 5.37 2.42 45.02 0.11 5.48 16 16 C -0.13 -4.40 5.65 30.67 0.17 -4.23 16 17 C 0.15 6.14 6.52 86.36 0.56 6.70 16 18 N -0.61 -30.43 2.99 -699.10 -2.09 -32.52 16 19 C -0.26 -14.30 9.58 84.03 0.81 -13.49 16 20 H 0.07 3.58 7.89 -2.91 -0.02 3.56 16 21 C -0.05 -2.75 4.92 84.86 0.42 -2.33 16 22 N -0.93 -54.86 11.19 21.65 0.24 -54.62 16 23 Si 0.97 44.58 29.59 68.60 2.03 46.61 16 24 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 25 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 26 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 27 C 0.18 8.49 5.30 86.36 0.46 8.95 16 28 C -0.13 -4.73 5.55 30.67 0.17 -4.56 16 29 H 0.06 0.42 6.43 -2.39 -0.02 0.41 16 30 H 0.06 0.40 6.43 -2.39 -0.02 0.38 16 31 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.08 0.53 6.43 -2.39 -0.02 0.51 16 33 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.05 0.67 7.44 -2.39 -0.02 0.65 16 35 H 0.07 0.73 6.43 -2.39 -0.02 0.71 16 36 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.07 0.57 6.43 -2.39 -0.02 0.56 16 38 H 0.07 0.57 6.43 -2.39 -0.02 0.55 16 39 H 0.05 0.54 6.51 -2.39 -0.02 0.52 16 40 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.09 0.87 6.43 -2.39 -0.02 0.85 16 42 H 0.07 0.85 6.43 -2.39 -0.02 0.83 16 43 H 0.42 7.34 6.12 -92.71 -0.57 6.77 16 44 H 0.42 10.70 8.07 -92.71 -0.75 9.95 16 45 H 0.07 2.68 7.57 -2.39 -0.02 2.66 16 46 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 47 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 48 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.06 2.47 7.93 -2.39 -0.02 2.45 16 50 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 51 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 52 H 0.06 3.39 6.07 -2.39 -0.01 3.37 16 53 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 54 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -65.43 409.13 2.20 -63.23 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: -0.41 Total: 25.29 kcal Atomic # 6 Polarization: 15.15 SS G_CDS: 6.69 Total: 21.83 kcal Atomic # 7 Polarization: -117.67 SS G_CDS: -6.01 Total: -123.68 kcal Atomic # 8 Polarization: -33.18 SS G_CDS: -0.10 Total: -33.29 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -65.43 2.20 -63.23 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328904879.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.508 kcal (2) G-P(sol) polarization free energy of solvation -65.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds