Wall clock time and date at job start Sat Apr 11 2020 05:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46899 * 110.99909 * 2 1 4 4 C 1.50699 * 109.47187 * 66.04738 * 3 2 1 5 5 O 1.21294 * 119.99794 * 359.97438 * 4 3 2 6 6 N 1.34773 * 120.00369 * 179.97438 * 4 3 2 7 7 C 1.37094 * 120.00169 * 179.97438 * 6 4 3 8 8 H 1.07998 * 120.00107 * 0.02562 * 7 6 4 9 9 C 1.38950 * 120.00200 * 179.97438 * 7 6 4 10 10 N 1.31416 * 119.99942 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00098 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.47109 * 60.00469 * 11 9 7 13 13 H 1.48499 * 109.46892 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47318 * 300.00032 * 11 9 7 15 15 C 1.46907 * 110.99745 * 236.05026 * 2 1 3 16 16 C 1.53035 * 109.45982 * 298.94938 * 15 2 1 17 17 C 1.53191 * 109.31327 * 181.39007 * 16 15 2 18 18 N 1.46926 * 108.89109 * 305.29292 * 17 16 15 19 19 C 1.34778 * 120.63336 * 233.68039 * 18 17 16 20 20 O 1.21286 * 119.99664 * 0.02562 * 19 18 17 21 21 C 1.50696 * 120.00030 * 180.02562 * 19 18 17 22 22 C 1.53007 * 109.47054 * 180.02562 * 21 19 18 23 23 C 1.52998 * 109.46650 * 59.99928 * 22 21 19 24 24 C 1.52994 * 109.47221 * 180.02562 * 22 21 19 25 25 C 1.53003 * 109.46965 * 300.00198 * 22 21 19 26 26 C 1.47207 * 118.55531 * 53.54119 * 18 17 16 27 27 C 1.53038 * 109.46064 * 59.02230 * 15 2 1 28 28 H 1.09000 * 109.46654 * 183.95392 * 1 2 3 29 29 H 1.08993 * 109.47225 * 303.95017 * 1 2 3 30 30 H 1.08994 * 109.46916 * 63.95166 * 1 2 3 31 31 H 1.08999 * 109.47176 * 186.04671 * 3 2 1 32 32 H 1.09003 * 109.47427 * 306.05306 * 3 2 1 33 33 H 0.97002 * 119.99675 * 0.02562 * 6 4 3 34 34 H 0.97001 * 119.99852 * 179.97438 * 10 9 7 35 35 H 1.09004 * 109.44233 * 178.98847 * 15 2 1 36 36 H 1.09003 * 109.49576 * 61.43676 * 16 15 2 37 37 H 1.09000 * 109.52700 * 301.35724 * 16 15 2 38 38 H 1.09002 * 109.58786 * 65.15336 * 17 16 15 39 39 H 1.08996 * 109.58870 * 185.43616 * 17 16 15 40 40 H 1.08992 * 109.47349 * 300.00085 * 21 19 18 41 41 H 1.09000 * 109.46730 * 60.00487 * 21 19 18 42 42 H 1.08998 * 109.47438 * 60.00578 * 23 22 21 43 43 H 1.09010 * 109.46846 * 180.02562 * 23 22 21 44 44 H 1.08994 * 109.47622 * 299.99985 * 23 22 21 45 45 H 1.08996 * 109.47429 * 59.99753 * 24 22 21 46 46 H 1.08998 * 109.47051 * 180.02562 * 24 22 21 47 47 H 1.09005 * 109.47197 * 299.99895 * 24 22 21 48 48 H 1.09002 * 109.46881 * 60.00052 * 25 22 21 49 49 H 1.08998 * 109.46656 * 179.97438 * 25 22 21 50 50 H 1.08996 * 109.46947 * 299.99795 * 25 22 21 51 51 H 1.08996 * 109.53610 * 186.67231 * 26 18 17 52 52 H 1.09002 * 109.68003 * 66.36699 * 26 18 17 53 53 H 1.09002 * 109.49557 * 298.56226 * 27 15 2 54 54 H 1.08996 * 109.50003 * 58.66123 * 27 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 8 1.0047 1.4455 2.1408 6 7 2.0189 3.3198 1.5238 7 6 1.6923 3.9346 2.7048 8 1 1.1293 3.3990 3.4548 9 6 2.0865 5.2466 2.9373 10 7 2.7720 5.8982 2.0249 11 14 1.6408 6.0845 4.5463 12 1 2.2306 5.3267 5.6790 13 1 2.1737 7.4706 4.5467 14 1 0.1635 6.1227 4.6920 15 6 1.9955 -0.7659 -1.1377 16 6 1.5261 -2.2189 -1.0350 17 6 2.1052 -3.0222 -2.2038 18 7 1.7393 -2.3605 -3.4635 19 6 1.1178 -3.0455 -4.4438 20 8 0.8550 -4.2196 -4.2905 21 6 0.7495 -2.3526 -5.7304 22 6 0.0598 -3.3475 -6.6661 23 6 -1.2062 -3.8847 -5.9955 24 6 -0.3136 -2.6443 -7.9725 25 6 1.0101 -4.5086 -6.9659 26 6 2.0634 -0.9341 -3.6290 27 6 1.4848 -0.1542 -2.4442 28 1 -0.3633 -1.0253 0.0709 29 1 -0.3633 0.5739 0.8524 30 1 -0.3633 0.4513 -0.9232 31 1 3.0797 1.3444 -0.1083 32 1 1.5610 1.9274 -0.8308 33 1 2.5242 3.8010 0.8500 34 1 3.0468 6.8143 2.1872 35 1 3.0849 -0.7344 -1.1234 36 1 0.4373 -2.2531 -1.0741 37 1 1.8699 -2.6472 -0.0935 38 1 3.1908 -3.0651 -2.1154 39 1 1.6974 -4.0329 -2.1901 40 1 0.0722 -1.5258 -5.5168 41 1 1.6514 -1.9696 -6.2078 42 1 -1.8832 -3.0576 -5.7819 43 1 -1.6973 -4.5939 -6.6619 44 1 -0.9398 -4.3858 -5.0650 45 1 0.5885 -2.2618 -8.4500 46 1 -0.8053 -3.3530 -8.6389 47 1 -0.9905 -1.8169 -7.7592 48 1 1.2764 -5.0097 -6.0353 49 1 0.5185 -5.2175 -7.6322 50 1 1.9119 -4.1258 -7.4436 51 1 1.6261 -0.5663 -4.5572 52 1 3.1453 -0.8045 -3.6584 53 1 0.3964 -0.2078 -2.4700 54 1 1.7997 0.8875 -2.5057 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331000670.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:06 Heat of formation + Delta-G solvation = -92.557287 kcal Electronic energy + Delta-G solvation = -30692.087436 eV Core-core repulsion = 26662.830254 eV Total energy + Delta-G solvation = -4029.257182 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.58280 -40.53782 -39.37674 -37.56051 -36.56677 -35.80965 -33.28158 -32.90295 -31.92481 -29.66397 -29.00402 -28.08647 -28.00529 -27.19473 -26.17771 -24.32249 -23.92776 -21.54740 -20.85029 -20.14124 -19.80410 -19.36932 -18.26863 -17.76168 -16.83903 -16.64310 -16.57781 -16.44010 -16.16393 -15.68195 -15.52195 -15.32307 -15.22246 -15.10155 -15.01534 -14.73345 -14.43732 -13.98967 -13.74576 -13.63471 -13.46602 -13.17168 -13.07954 -12.95389 -12.90479 -12.76145 -12.69686 -12.63770 -12.42071 -12.33984 -12.17929 -12.14718 -12.11116 -11.93068 -11.72328 -11.54571 -11.51941 -11.46629 -11.34784 -10.38463 -10.24570 -9.97483 -9.60993 -9.07654 -8.44576 -5.92634 1.40319 1.42216 1.52649 1.68719 2.05538 2.09088 2.29633 2.79082 3.22480 3.44520 3.55395 3.74061 3.82003 3.90690 3.95633 4.04937 4.12457 4.24696 4.28429 4.34191 4.37145 4.47155 4.55076 4.56346 4.60112 4.63927 4.65767 4.67212 4.73626 4.82209 4.83667 4.85734 4.87736 4.92817 5.00188 5.01368 5.10328 5.11075 5.18958 5.22340 5.27674 5.33946 5.38446 5.43004 5.54712 5.56682 5.68990 5.92873 6.10918 6.27111 6.48359 6.63954 7.15911 7.27362 7.60064 8.16694 8.72438 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.026163 B = 0.001957 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.938880 B =14305.132809 C =14686.186606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.531 5.531 3 C 0.060 3.940 4 C 0.440 3.560 5 O -0.617 6.617 6 N -0.575 5.575 7 C -0.331 4.331 8 H 0.077 0.923 9 C -0.013 4.013 10 N -0.919 5.919 11 Si 0.990 3.010 12 H -0.273 1.273 13 H -0.270 1.270 14 H -0.273 1.273 15 C 0.087 3.913 16 C -0.117 4.117 17 C 0.118 3.882 18 N -0.613 5.613 19 C 0.510 3.490 20 O -0.568 6.568 21 C -0.128 4.128 22 C -0.053 4.053 23 C -0.151 4.151 24 C -0.138 4.138 25 C -0.149 4.149 26 C 0.114 3.886 27 C -0.168 4.168 28 H 0.069 0.931 29 H 0.051 0.949 30 H 0.033 0.967 31 H 0.110 0.890 32 H 0.071 0.929 33 H 0.396 0.604 34 H 0.277 0.723 35 H 0.094 0.906 36 H 0.055 0.945 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.106 0.894 41 H 0.114 0.886 42 H 0.050 0.950 43 H 0.050 0.950 44 H 0.057 0.943 45 H 0.066 0.934 46 H 0.056 0.944 47 H 0.061 0.939 48 H 0.058 0.942 49 H 0.050 0.950 50 H 0.056 0.944 51 H 0.108 0.892 52 H 0.090 0.910 53 H 0.062 0.938 54 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.239 -13.670 -22.189 26.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.254 5.254 3 C -0.071 4.071 4 C 0.227 3.773 5 O -0.503 6.503 6 N -0.212 5.212 7 C -0.461 4.461 8 H 0.095 0.905 9 C -0.213 4.213 10 N -0.560 5.560 11 Si 0.814 3.186 12 H -0.199 1.199 13 H -0.195 1.195 14 H -0.198 1.198 15 C -0.021 4.021 16 C -0.156 4.156 17 C -0.005 4.005 18 N -0.346 5.346 19 C 0.301 3.699 20 O -0.448 6.448 21 C -0.168 4.168 22 C -0.054 4.054 23 C -0.208 4.208 24 C -0.195 4.195 25 C -0.206 4.206 26 C -0.008 4.008 27 C -0.207 4.207 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.128 0.872 32 H 0.089 0.911 33 H 0.230 0.770 34 H 0.086 0.914 35 H 0.112 0.888 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.124 0.876 41 H 0.132 0.868 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.085 0.915 46 H 0.075 0.925 47 H 0.080 0.920 48 H 0.077 0.923 49 H 0.069 0.931 50 H 0.075 0.925 51 H 0.126 0.874 52 H 0.108 0.892 53 H 0.081 0.919 54 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.554 -14.706 -21.104 25.728 hybrid contribution -0.361 1.141 0.243 1.221 sum -0.915 -13.565 -20.861 24.901 Atomic orbital electron populations 1.22388 0.87552 1.01889 1.00193 1.61753 1.08467 1.12285 1.42855 1.21721 1.02046 0.89626 0.93726 1.20884 0.83622 0.82191 0.90590 1.90470 1.45185 1.65418 1.49213 1.41921 1.50115 1.11624 1.17571 1.19584 1.34322 0.96395 0.95804 0.90522 1.25991 0.96363 0.96656 1.02260 1.69659 1.38074 1.12666 1.35647 0.85029 0.78558 0.77336 0.77659 1.19882 1.19480 1.19834 1.21837 1.00149 0.92892 0.87224 1.21870 1.00664 0.94390 0.98627 1.21488 1.00287 0.96631 0.82084 1.48385 1.58683 1.11687 1.15871 1.21199 0.76076 0.86762 0.85899 1.90572 1.55038 1.17845 1.81338 1.21867 1.03435 0.99373 0.92090 1.20305 0.95221 0.94858 0.94976 1.22052 0.96625 1.00762 1.01362 1.21854 1.01953 1.00287 0.95416 1.22038 0.98725 0.98002 1.01865 1.21894 1.01725 0.78214 0.99015 1.22611 1.01590 1.00875 0.95649 0.91215 0.93019 0.94833 0.87194 0.91089 0.76983 0.91351 0.88822 0.92610 0.90466 0.90041 0.90342 0.87593 0.86768 0.93134 0.93055 0.92376 0.91516 0.92472 0.92012 0.92290 0.93137 0.92540 0.87411 0.89228 0.91885 0.89455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 8.46 127.69 1.08 1.95 16 2 N -0.53 -16.11 4.49 -901.46 -4.05 -20.15 16 3 C 0.06 1.94 4.89 85.56 0.42 2.35 16 4 C 0.44 20.46 7.48 87.66 0.66 21.12 16 5 O -0.62 -33.76 13.91 -3.07 -0.04 -33.80 16 6 N -0.57 -28.92 5.29 -306.99 -1.62 -30.55 16 7 C -0.33 -18.65 9.68 84.04 0.81 -17.84 16 8 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 9 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 10 N -0.92 -48.89 13.05 21.66 0.28 -48.61 16 11 Si 0.99 42.71 29.55 68.60 2.03 44.74 16 12 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 13 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 14 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 15 C 0.09 1.83 2.19 44.94 0.10 1.93 16 16 C -0.12 -2.42 5.11 30.67 0.16 -2.26 16 17 C 0.12 2.14 6.42 86.36 0.55 2.69 16 18 N -0.61 -9.98 2.98 -818.19 -2.44 -12.42 16 19 C 0.51 9.48 7.11 87.66 0.62 10.10 16 20 O -0.57 -14.50 10.76 -3.05 -0.03 -14.53 16 21 C -0.13 -1.55 3.12 29.85 0.09 -1.46 16 22 C -0.05 -0.75 0.77 -52.18 -0.04 -0.79 16 23 C -0.15 -2.64 8.18 71.98 0.59 -2.06 16 24 C -0.14 -1.38 8.47 71.98 0.61 -0.77 16 25 C -0.15 -2.41 8.18 71.98 0.59 -1.82 16 26 C 0.11 1.29 6.35 86.31 0.55 1.84 16 27 C -0.17 -2.69 4.66 30.67 0.14 -2.55 16 28 H 0.07 2.02 6.36 -2.39 -0.02 2.01 16 29 H 0.05 2.09 5.82 -2.39 -0.01 2.07 16 30 H 0.03 0.92 6.31 -2.39 -0.02 0.90 16 31 H 0.11 3.08 8.00 -2.39 -0.02 3.06 16 32 H 0.07 2.00 6.90 -2.39 -0.02 1.98 16 33 H 0.40 18.78 7.90 -92.71 -0.73 18.04 16 34 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 35 H 0.09 1.80 8.03 -2.39 -0.02 1.78 16 36 H 0.06 1.29 6.50 -2.39 -0.02 1.28 16 37 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.08 1.68 7.00 -2.39 -0.02 1.67 16 40 H 0.11 1.02 7.69 -2.39 -0.02 1.00 16 41 H 0.11 0.89 7.96 -2.39 -0.02 0.87 16 42 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 44 H 0.06 1.35 5.51 -2.39 -0.01 1.33 16 45 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 48 H 0.06 1.28 5.51 -2.39 -0.01 1.27 16 49 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 50 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 51 H 0.11 0.75 5.97 -2.39 -0.01 0.74 16 52 H 0.09 0.78 8.14 -2.39 -0.02 0.77 16 53 H 0.06 1.16 6.47 -2.39 -0.02 1.15 16 54 H 0.09 1.32 6.69 -2.39 -0.02 1.30 16 Total: -1.00 -70.46 403.42 1.68 -68.77 By element: Atomic # 1 Polarization: 34.16 SS G_CDS: 0.16 Total: 34.32 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: 7.40 Total: 12.24 kcal Atomic # 7 Polarization: -103.90 SS G_CDS: -7.83 Total: -111.73 kcal Atomic # 8 Polarization: -48.26 SS G_CDS: -0.08 Total: -48.34 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -70.46 1.68 -68.77 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331000670.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.784 kcal (2) G-P(sol) polarization free energy of solvation -70.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds