Wall clock time and date at job start Sat Apr 11 2020 05:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47413 * 2 1 4 4 C 1.52996 * 109.47501 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47160 * 179.97438 * 4 3 2 6 6 C 1.53008 * 109.47045 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.47335 * 180.02562 * 6 5 4 8 8 O 1.21290 * 119.99695 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00152 * 179.97438 * 7 6 5 10 10 C 1.47418 * 125.64706 * 0.02562 * 9 7 6 11 11 C 1.54907 * 104.83006 * 204.09163 * 10 9 7 12 12 H 1.08999 * 111.00683 * 81.10657 * 11 10 9 13 13 N 1.46901 * 111.00481 * 204.91739 * 11 10 9 14 14 C 1.46902 * 110.99844 * 273.54527 * 13 11 10 15 15 C 1.50702 * 109.47027 * 179.97438 * 14 13 11 16 16 O 1.21293 * 120.00255 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99928 * 179.72353 * 15 14 13 18 18 C 1.37101 * 120.00327 * 180.27606 * 17 15 14 19 19 H 1.08001 * 119.99426 * 0.02562 * 18 17 15 20 20 C 1.38942 * 120.00412 * 180.02562 * 18 17 15 21 21 N 1.31414 * 120.00005 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00057 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47191 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46534 * 120.00189 * 22 20 18 25 25 H 1.48498 * 109.47283 * 240.00132 * 22 20 18 26 26 C 1.55154 * 101.58536 * 322.99172 * 11 10 9 27 27 C 1.47021 * 125.64444 * 179.97438 * 9 7 6 28 28 H 1.09005 * 109.88196 * 298.38959 * 27 9 7 29 29 C 1.52994 * 109.88381 * 59.40538 * 27 9 7 30 30 H 1.08999 * 109.47385 * 300.00186 * 1 2 3 31 31 H 1.09008 * 109.46921 * 60.00385 * 1 2 3 32 32 H 1.09004 * 109.47397 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47693 * 239.99460 * 2 1 3 34 34 H 1.09008 * 109.46921 * 119.99615 * 2 1 3 35 35 H 1.09010 * 109.47444 * 59.99421 * 3 2 1 36 36 H 1.09004 * 109.47253 * 299.99733 * 3 2 1 37 37 H 1.08999 * 109.46890 * 60.00063 * 4 3 2 38 38 H 1.09008 * 109.47329 * 299.99919 * 4 3 2 39 39 H 1.08999 * 109.47143 * 60.00248 * 5 4 3 40 40 H 1.08998 * 109.47335 * 299.99778 * 5 4 3 41 41 H 1.08992 * 109.47053 * 59.99573 * 6 5 4 42 42 H 1.08998 * 109.46635 * 299.99915 * 6 5 4 43 43 H 1.08997 * 110.36783 * 85.25407 * 10 9 7 44 44 H 1.09000 * 110.46457 * 322.97801 * 10 9 7 45 45 H 1.00895 * 111.00207 * 37.49870 * 13 11 10 46 46 H 1.09004 * 109.47131 * 60.00016 * 14 13 11 47 47 H 1.09000 * 109.47732 * 300.00127 * 14 13 11 48 48 H 0.97000 * 120.00317 * 0.28382 * 17 15 14 49 49 H 0.96996 * 120.00330 * 179.97438 * 21 20 18 50 50 H 1.08998 * 110.72660 * 153.86573 * 26 11 10 51 51 H 1.09004 * 110.71821 * 277.14111 * 26 11 10 52 52 H 1.09001 * 109.47363 * 58.54698 * 29 27 9 53 53 H 1.09008 * 109.46883 * 178.54153 * 29 27 9 54 54 H 1.08994 * 109.47391 * 298.54015 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8850 0.0000 6 6 5.6101 2.8850 0.0000 7 6 6.1124 4.3057 0.0000 8 8 5.3243 5.2276 0.0005 9 7 7.4375 4.5520 0.0005 10 6 8.5011 3.5312 0.0006 11 6 9.7335 4.2427 0.6125 12 1 9.6756 4.2577 1.7008 13 7 10.9822 3.6127 0.1631 14 6 11.3427 2.4821 1.0290 15 6 12.6254 1.8621 0.5377 16 8 13.1846 2.3176 -0.4375 17 7 13.1545 0.8053 1.1855 18 6 14.3244 0.2448 0.7420 19 1 14.8222 0.6505 -0.1264 20 6 14.8696 -0.8450 1.4096 21 7 14.2635 -1.3388 2.4659 22 14 16.4633 -1.6091 0.8047 23 1 16.9412 -0.8738 -0.3936 24 1 17.4886 -1.5284 1.8760 25 1 16.2273 -3.0320 0.4515 26 6 9.5901 5.6725 0.0274 27 6 8.0616 5.8832 0.0001 28 1 7.7781 6.4252 -0.9022 29 6 7.6188 6.6659 1.2378 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6766 1.9564 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 3.9337 0.9285 -0.8891 38 1 3.9330 0.9288 0.8909 39 1 3.7163 3.3993 0.8895 40 1 3.7171 3.3983 -0.8904 41 1 5.9733 2.3707 -0.8897 42 1 5.9733 2.3715 0.8902 43 1 8.7166 3.2078 -1.0177 44 1 8.2112 2.6789 0.6151 45 1 10.9143 3.3226 -0.8009 46 1 10.5469 1.7375 1.0045 47 1 11.4778 2.8358 2.0511 48 1 12.7075 0.4412 1.9656 49 1 14.6439 -2.0999 2.9317 50 1 10.0689 6.4050 0.6773 51 1 10.0040 5.7203 -0.9799 52 1 7.8985 6.1147 2.1356 53 1 8.1053 7.6413 1.2441 54 1 6.5373 6.7995 1.2156 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332049358.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:11 Heat of formation + Delta-G solvation = -123.335738 kcal Electronic energy + Delta-G solvation = -29148.311395 eV Core-core repulsion = 25117.719560 eV Total energy + Delta-G solvation = -4030.591835 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.40482 -40.12841 -39.01754 -37.25500 -36.21454 -35.55585 -34.39955 -33.24125 -32.89049 -30.99818 -29.99361 -27.88453 -26.80170 -26.06948 -25.56473 -23.38490 -22.24657 -21.86398 -21.41935 -21.02334 -19.93772 -19.89218 -18.19995 -17.61996 -17.36446 -17.15714 -16.65127 -16.42124 -16.16752 -16.01806 -15.69054 -15.24054 -14.96500 -14.79951 -14.64970 -14.38834 -14.35177 -14.07581 -13.82555 -13.68855 -13.59701 -13.45350 -13.37079 -13.19838 -13.05589 -12.95275 -12.80913 -12.41751 -12.38141 -12.33334 -12.24176 -12.10851 -11.94788 -11.80146 -11.63921 -11.58715 -11.50160 -11.48753 -11.34682 -10.79514 -10.31551 -9.98512 -9.74816 -9.31432 -8.44831 -5.92888 1.38120 1.44014 1.57444 1.60471 1.90998 2.08982 2.30876 2.88850 3.23170 3.37732 3.48876 3.71396 3.75664 3.84541 3.97166 4.02759 4.10513 4.19106 4.20224 4.26917 4.33514 4.36579 4.38532 4.47102 4.53480 4.55970 4.61296 4.67414 4.70213 4.74503 4.78230 4.82310 4.88209 4.94508 4.97743 5.06489 5.08082 5.11403 5.13565 5.21554 5.25923 5.30310 5.39713 5.43809 5.44555 5.47876 5.53786 5.90739 6.11371 6.37066 6.50034 6.62829 7.13797 7.15716 7.59965 8.15231 8.72594 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.009000 B = 0.002034 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3110.509334 B =13760.718803 C =16474.090914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.115 4.115 5 C -0.098 4.098 6 C -0.133 4.133 7 C 0.522 3.478 8 O -0.580 6.580 9 N -0.612 5.612 10 C 0.069 3.931 11 C 0.083 3.917 12 H 0.104 0.896 13 N -0.664 5.664 14 C 0.064 3.936 15 C 0.438 3.562 16 O -0.624 6.624 17 N -0.573 5.573 18 C -0.332 4.332 19 H 0.078 0.922 20 C -0.012 4.012 21 N -0.920 5.920 22 Si 0.990 3.010 23 H -0.274 1.274 24 H -0.273 1.273 25 H -0.271 1.271 26 C -0.109 4.109 27 C 0.132 3.868 28 H 0.066 0.934 29 C -0.155 4.155 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.107 0.893 42 H 0.110 0.890 43 H 0.076 0.924 44 H 0.095 0.905 45 H 0.349 0.651 46 H 0.075 0.925 47 H 0.106 0.894 48 H 0.397 0.603 49 H 0.277 0.723 50 H 0.095 0.905 51 H 0.079 0.921 52 H 0.059 0.941 53 H 0.079 0.921 54 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.694 5.839 -1.007 23.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.163 4.163 3 C -0.157 4.157 4 C -0.153 4.153 5 C -0.136 4.136 6 C -0.172 4.172 7 C 0.313 3.687 8 O -0.460 6.460 9 N -0.345 5.345 10 C -0.056 4.056 11 C -0.028 4.028 12 H 0.122 0.878 13 N -0.296 5.296 14 C -0.068 4.068 15 C 0.225 3.775 16 O -0.510 6.510 17 N -0.211 5.211 18 C -0.461 4.461 19 H 0.096 0.904 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.814 3.186 23 H -0.198 1.198 24 H -0.198 1.198 25 H -0.197 1.197 26 C -0.148 4.148 27 C 0.028 3.972 28 H 0.084 0.916 29 C -0.213 4.213 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.125 0.875 42 H 0.128 0.872 43 H 0.094 0.906 44 H 0.113 0.887 45 H 0.169 0.831 46 H 0.093 0.907 47 H 0.124 0.876 48 H 0.231 0.769 49 H 0.086 0.914 50 H 0.114 0.886 51 H 0.097 0.903 52 H 0.078 0.922 53 H 0.098 0.902 54 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -22.346 6.889 -1.201 23.415 hybrid contribution 0.033 -1.148 -0.172 1.161 sum -22.313 5.742 -1.373 23.081 Atomic orbital electron populations 1.21791 0.95748 1.01861 1.01781 1.21543 0.96060 0.96534 1.02183 1.21602 0.95283 0.97020 1.01842 1.21587 0.95560 0.95348 1.02791 1.21277 0.92788 0.97381 1.02140 1.21741 0.97770 0.91866 1.05867 1.21002 0.80275 0.92640 0.74830 1.90665 1.55309 1.48044 1.52001 1.48612 1.05013 1.08220 1.72705 1.23291 0.87971 0.92254 1.02086 1.22793 0.85443 0.94049 1.00491 0.87807 1.60100 1.32041 1.30659 1.06772 1.21602 0.93610 0.93027 0.98552 1.20925 0.88945 0.82141 0.85462 1.90507 1.65192 1.64776 1.30557 1.41933 1.22504 1.28212 1.28435 1.19688 1.01046 1.12506 1.12903 0.90352 1.25987 1.02430 0.96927 0.95872 1.69666 1.41203 1.25572 1.19626 0.84909 0.77510 0.77990 0.78176 1.19840 1.19806 1.19672 1.22667 0.92387 0.96793 1.02943 1.21623 0.92744 0.83954 0.98847 0.91566 1.22066 1.01495 1.00643 0.97088 0.92797 0.92828 0.92360 0.91905 0.91866 0.92334 0.92389 0.91294 0.91176 0.92599 0.92743 0.87502 0.87208 0.90616 0.88696 0.83077 0.90716 0.87612 0.76906 0.91364 0.88600 0.90259 0.92226 0.90178 0.93433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 71.98 0.71 -0.95 16 2 C -0.13 -1.44 5.93 30.59 0.18 -1.26 16 3 C -0.12 -1.52 5.21 30.59 0.16 -1.36 16 4 C -0.12 -1.44 5.21 30.59 0.16 -1.28 16 5 C -0.10 -1.58 4.50 30.60 0.14 -1.44 16 6 C -0.13 -2.02 4.71 29.85 0.14 -1.88 16 7 C 0.52 11.49 7.63 87.66 0.67 12.16 16 8 O -0.58 -17.06 14.87 -3.06 -0.05 -17.10 16 9 N -0.61 -11.91 3.08 -788.07 -2.43 -14.34 16 10 C 0.07 1.13 6.27 86.86 0.54 1.68 16 11 C 0.08 1.57 3.32 46.31 0.15 1.72 16 12 H 0.10 1.83 7.92 -2.39 -0.02 1.81 16 13 N -0.66 -17.50 6.00 -488.40 -2.93 -20.43 16 14 C 0.06 1.88 6.04 85.56 0.52 2.40 16 15 C 0.44 19.33 7.82 87.66 0.69 20.02 16 16 O -0.62 -32.79 15.78 -3.07 -0.05 -32.84 16 17 N -0.57 -27.90 5.29 -306.98 -1.62 -29.52 16 18 C -0.33 -18.25 9.68 84.04 0.81 -17.44 16 19 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 20 C -0.01 -0.64 5.50 84.92 0.47 -0.18 16 21 N -0.92 -48.17 13.05 21.66 0.28 -47.89 16 22 Si 0.99 41.93 29.55 68.60 2.03 43.96 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 24 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 25 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 26 C -0.11 -1.96 6.19 31.78 0.20 -1.77 16 27 C 0.13 2.54 3.49 45.34 0.16 2.70 16 28 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 29 C -0.15 -2.92 9.07 71.98 0.65 -2.27 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 35 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 36 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 37 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 39 H 0.06 1.05 8.10 -2.39 -0.02 1.03 16 40 H 0.05 1.03 8.10 -2.39 -0.02 1.01 16 41 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.11 1.31 7.85 -2.39 -0.02 1.29 16 43 H 0.08 1.24 7.80 -2.39 -0.02 1.22 16 44 H 0.09 1.26 7.48 -2.39 -0.02 1.24 16 45 H 0.35 9.70 8.00 -89.70 -0.72 8.98 16 46 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 47 H 0.11 2.79 8.09 -2.39 -0.02 2.77 16 48 H 0.40 18.21 7.90 -92.71 -0.73 17.47 16 49 H 0.28 13.58 8.31 -92.71 -0.77 12.81 16 50 H 0.10 1.60 7.83 -2.39 -0.02 1.58 16 51 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 52 H 0.06 1.07 8.14 -2.39 -0.02 1.06 16 53 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 54 H 0.05 1.12 6.73 -2.39 -0.02 1.10 16 Total: -1.00 -68.83 432.84 1.01 -67.83 By element: Atomic # 1 Polarization: 40.04 SS G_CDS: -0.58 Total: 39.46 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: 6.35 Total: 10.87 kcal Atomic # 7 Polarization: -105.47 SS G_CDS: -6.70 Total: -112.17 kcal Atomic # 8 Polarization: -49.85 SS G_CDS: -0.09 Total: -49.94 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -68.83 1.01 -67.83 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332049358.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.510 kcal (2) G-P(sol) polarization free energy of solvation -68.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds