Wall clock time and date at job start Sat Apr 11 2020 05:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47405 * 2 1 4 4 C 1.52998 * 109.46858 * 301.23856 * 3 2 1 5 5 C 1.53000 * 109.47407 * 294.73290 * 4 3 2 6 6 C 1.50707 * 109.46759 * 61.23171 * 3 2 1 7 7 O 1.21274 * 120.00088 * 239.99987 * 6 3 2 8 8 N 1.34774 * 119.99653 * 60.00450 * 6 3 2 9 9 C 1.46496 * 119.99912 * 179.97438 * 8 6 3 10 10 C 1.53513 * 114.17335 * 204.99745 * 9 8 6 11 11 N 1.47473 * 87.93295 * 220.13931 * 10 9 8 12 12 C 1.46905 * 110.99695 * 138.70471 * 11 10 9 13 13 C 1.50699 * 109.47260 * 169.99819 * 12 11 10 14 14 O 1.21282 * 120.00078 * 0.02562 * 13 12 11 15 15 N 1.34779 * 120.00067 * 179.97438 * 13 12 11 16 16 C 1.46498 * 120.00156 * 0.02562 * 15 13 12 17 17 C 1.52992 * 109.47300 * 89.99261 * 16 15 13 18 18 C 1.46504 * 119.99680 * 180.02562 * 15 13 12 19 19 C 1.50691 * 109.47115 * 90.00367 * 18 15 13 20 20 H 1.08005 * 120.00498 * 359.97438 * 19 18 15 21 21 C 1.37876 * 120.00071 * 179.97438 * 19 18 15 22 22 N 1.31514 * 120.00236 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00283 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46852 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47215 * 119.99974 * 23 21 19 26 26 H 1.48503 * 109.47033 * 240.00212 * 23 21 19 27 27 C 1.47477 * 87.83763 * 27.01427 * 11 10 9 28 28 H 1.09002 * 109.46887 * 305.87944 * 1 2 3 29 29 H 1.08997 * 109.47476 * 65.88215 * 1 2 3 30 30 H 1.09003 * 109.46875 * 185.88474 * 1 2 3 31 31 H 1.09005 * 109.46747 * 240.00321 * 2 1 3 32 32 H 1.08991 * 109.47522 * 120.00360 * 2 1 3 33 33 H 1.09000 * 109.47320 * 181.23494 * 3 2 1 34 34 H 1.08997 * 109.47576 * 54.73863 * 4 3 2 35 35 H 1.09008 * 109.47088 * 174.73457 * 4 3 2 36 36 H 1.09004 * 109.47074 * 300.58840 * 5 4 3 37 37 H 1.09000 * 109.46753 * 60.58233 * 5 4 3 38 38 H 1.08997 * 109.47613 * 180.58313 * 5 4 3 39 39 H 0.97007 * 120.00144 * 359.97438 * 8 6 3 40 40 H 1.09005 * 113.25598 * 337.95338 * 9 8 6 41 41 H 1.09001 * 113.47454 * 105.37373 * 10 9 8 42 42 H 1.09006 * 113.47596 * 334.91034 * 10 9 8 43 43 H 1.08999 * 109.47346 * 49.99754 * 12 11 10 44 44 H 1.09000 * 109.47107 * 289.99621 * 12 11 10 45 45 H 1.08996 * 109.47048 * 210.00236 * 16 15 13 46 46 H 1.09005 * 109.46956 * 329.99316 * 16 15 13 47 47 H 1.09001 * 109.47404 * 179.97438 * 17 16 15 48 48 H 1.09005 * 109.47757 * 300.00187 * 17 16 15 49 49 H 1.09005 * 109.47071 * 60.00125 * 17 16 15 50 50 H 1.09006 * 109.46642 * 210.00597 * 18 15 13 51 51 H 1.08994 * 109.47307 * 329.99766 * 18 15 13 52 52 H 0.96992 * 120.00484 * 179.97438 * 22 21 19 53 53 H 1.09000 * 113.48200 * 87.75242 * 27 11 10 54 54 H 1.09003 * 113.47554 * 218.22103 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5048 2.1726 -1.2334 5 6 2.0944 1.5409 -2.4960 6 6 1.5628 2.1440 1.2455 7 8 0.8635 3.1308 1.1555 8 7 1.9132 1.6747 2.4594 9 6 1.4497 2.3569 3.6701 10 6 2.3470 2.1396 4.8966 11 7 1.1204 2.0275 5.7076 12 6 1.2388 0.9458 6.6944 13 6 0.0829 1.0168 7.6588 14 8 -0.7571 1.8830 7.5359 15 7 -0.0179 0.1172 8.6573 16 6 0.9964 -0.9294 8.8055 17 6 2.1186 -0.4268 9.7158 18 6 -1.1419 0.1859 9.5944 19 6 -2.2848 -0.6445 9.0699 20 1 -2.1842 -1.1706 8.1320 21 6 -3.4589 -0.7327 9.7872 22 7 -3.5817 -0.0917 10.9290 23 14 -4.8754 -1.7627 9.1374 24 1 -4.4872 -2.3773 7.8425 25 1 -5.1998 -2.8315 10.1158 26 1 -6.0655 -0.8973 8.9369 27 6 0.4267 1.5609 4.4927 28 1 -0.3633 0.6023 0.8327 29 1 -0.3634 0.4199 -0.9379 30 1 -0.3633 -1.0223 0.1054 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 3.1298 1.4425 -0.0221 34 1 0.4181 2.0921 -1.2602 35 1 1.7901 3.2236 -1.1857 36 1 3.1816 1.6123 -2.4642 37 1 1.8005 0.4926 -2.5489 38 1 1.7211 2.0677 -3.3742 39 1 2.4722 0.8852 2.5313 40 1 1.1723 3.3970 3.4987 41 1 2.9561 3.0078 5.1483 42 1 2.9251 1.2165 4.8537 43 1 2.1754 1.0538 7.2414 44 1 1.2259 -0.0163 6.1822 45 1 0.5413 -1.8167 9.2457 46 1 1.4066 -1.1791 7.8269 47 1 2.8731 -1.2057 9.8264 48 1 2.5738 0.4605 9.2755 49 1 1.7084 -0.1772 10.6943 50 1 -0.8293 -0.1982 10.5655 51 1 -1.4640 1.2218 9.7001 52 1 -4.4078 -0.1535 11.4335 53 1 0.4922 0.4834 4.3419 54 1 -0.5918 1.9387 4.4020 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001391408924.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:43 Heat of formation + Delta-G solvation = -74.460404 kcal Electronic energy + Delta-G solvation = -30296.587179 eV Core-core repulsion = 26268.114737 eV Total energy + Delta-G solvation = -4028.472442 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.89081 -40.82424 -39.91846 -37.01103 -36.87483 -35.21528 -34.88408 -32.16256 -31.77409 -31.24227 -29.15560 -28.31972 -27.00563 -26.05716 -24.59147 -24.37217 -23.83267 -22.49809 -21.39316 -20.09074 -19.94974 -18.64937 -17.98733 -17.93066 -17.86025 -17.00018 -16.91628 -16.62801 -16.35215 -16.14226 -15.83158 -15.46991 -14.99351 -14.66318 -14.51348 -14.39172 -14.29067 -14.15331 -13.87317 -13.73979 -13.69727 -13.55927 -13.26550 -13.10876 -12.91948 -12.90232 -12.69723 -12.61172 -12.49612 -12.38983 -12.26998 -12.16832 -12.02101 -11.94048 -11.79534 -11.69280 -11.48290 -11.38337 -10.78422 -10.67000 -10.58162 -10.09404 -9.82736 -9.40904 -8.23938 -6.38897 1.32970 1.36356 1.47453 1.62746 1.89338 2.02884 2.29823 2.42533 3.04853 3.06699 3.40424 3.64616 3.70078 3.81554 3.84124 3.94004 4.01166 4.08435 4.19741 4.29621 4.31960 4.37132 4.38158 4.46098 4.49442 4.59186 4.65258 4.67803 4.75991 4.77831 4.85074 4.90007 4.94400 4.97489 5.00582 5.05848 5.06007 5.21351 5.21727 5.26057 5.26933 5.30143 5.36152 5.41006 5.44848 5.57455 5.58040 5.84103 5.94260 6.05952 6.56386 6.70030 6.85210 7.27836 7.28460 7.56910 8.83203 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012997 B = 0.002356 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.830224 B =11881.872294 C =13067.588462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.110 4.110 3 C -0.101 4.101 4 C -0.110 4.110 5 C -0.147 4.147 6 C 0.515 3.485 7 O -0.588 6.588 8 N -0.702 5.702 9 C 0.128 3.872 10 C 0.009 3.991 11 N -0.482 5.482 12 C 0.020 3.980 13 C 0.493 3.507 14 O -0.587 6.587 15 N -0.607 5.607 16 C 0.100 3.900 17 C -0.161 4.161 18 C 0.263 3.737 19 C -0.538 4.538 20 H 0.052 0.948 21 C 0.004 3.996 22 N -0.929 5.929 23 Si 0.968 3.032 24 H -0.266 1.266 25 H -0.267 1.267 26 H -0.284 1.284 27 C -0.013 4.013 28 H 0.026 0.974 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.127 0.873 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.054 0.946 39 H 0.419 0.581 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.114 0.886 43 H 0.131 0.869 44 H 0.100 0.900 45 H 0.070 0.930 46 H 0.103 0.897 47 H 0.097 0.903 48 H 0.061 0.939 49 H 0.034 0.966 50 H 0.021 0.979 51 H -0.010 1.010 52 H 0.267 0.733 53 H 0.092 0.908 54 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.554 -5.658 -22.815 32.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.147 4.147 3 C -0.122 4.122 4 C -0.148 4.148 5 C -0.204 4.204 6 C 0.303 3.697 7 O -0.467 6.467 8 N -0.355 5.355 9 C 0.022 3.978 10 C -0.120 4.120 11 N -0.205 5.205 12 C -0.111 4.111 13 C 0.282 3.718 14 O -0.467 6.467 15 N -0.339 5.339 16 C -0.022 4.022 17 C -0.219 4.219 18 C 0.141 3.859 19 C -0.577 4.577 20 H 0.071 0.929 21 C -0.195 4.195 22 N -0.569 5.569 23 Si 0.792 3.208 24 H -0.190 1.190 25 H -0.192 1.192 26 H -0.210 1.210 27 C -0.143 4.143 28 H 0.045 0.955 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.118 0.882 32 H 0.102 0.898 33 H 0.145 0.855 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.257 0.743 40 H 0.117 0.883 41 H 0.122 0.878 42 H 0.132 0.868 43 H 0.149 0.851 44 H 0.118 0.882 45 H 0.088 0.912 46 H 0.122 0.878 47 H 0.116 0.884 48 H 0.080 0.920 49 H 0.053 0.947 50 H 0.039 0.961 51 H 0.009 0.991 52 H 0.075 0.925 53 H 0.110 0.890 54 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 21.271 -3.942 -22.357 31.110 hybrid contribution -1.279 -0.893 0.276 1.584 sum 19.992 -4.835 -22.081 30.176 Atomic orbital electron populations 1.21890 0.97102 1.01726 1.01119 1.21578 0.95063 0.93256 1.04818 1.21503 1.03424 0.96439 0.90796 1.21374 1.00538 0.99021 0.93887 1.21796 1.01444 1.01304 0.95882 1.21409 0.78669 0.83545 0.86032 1.90709 1.39495 1.28824 1.87704 1.45790 1.53369 1.32039 1.04262 1.22240 0.94981 0.97252 0.83360 1.24317 0.93348 1.04817 0.89525 1.68711 1.10320 1.35405 1.06022 1.22646 0.97409 0.95901 0.95178 1.21289 0.87546 0.80829 0.82149 1.90651 1.44461 1.37926 1.73639 1.48314 1.25841 1.30177 1.29587 1.21755 0.88495 0.90055 1.01915 1.22162 0.98118 1.02566 0.99076 1.18651 0.84103 0.95120 0.88007 1.21719 0.99792 1.29641 1.06534 0.92939 1.25899 1.01316 0.97137 0.95124 1.70062 1.27876 1.43718 1.15278 0.85364 0.78327 0.78379 0.78704 1.18997 1.19159 1.21037 1.24451 0.99526 1.00051 0.90302 0.95475 0.92479 0.91639 0.88236 0.89751 0.85481 0.92903 0.93150 0.91392 0.91305 0.92707 0.74254 0.88301 0.87825 0.86812 0.85111 0.88195 0.91158 0.87847 0.88382 0.91998 0.94691 0.96069 0.99141 0.92450 0.89027 0.93217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.22 71.98 0.66 -1.65 16 2 C -0.11 -0.90 5.35 30.59 0.16 -0.73 16 3 C -0.10 -1.14 2.50 -11.54 -0.03 -1.17 16 4 C -0.11 -1.59 4.52 30.59 0.14 -1.45 16 5 C -0.15 -1.27 9.66 71.98 0.70 -0.57 16 6 C 0.51 9.99 5.86 87.66 0.51 10.50 16 7 O -0.59 -17.92 15.51 -3.01 -0.05 -17.97 16 8 N -0.70 -10.23 5.28 -441.69 -2.33 -12.56 16 9 C 0.13 2.68 4.59 45.45 0.21 2.89 16 10 C 0.01 0.14 7.45 83.57 0.62 0.76 16 11 N -0.48 -13.40 5.82 -932.57 -5.43 -18.82 16 12 C 0.02 0.52 3.85 85.56 0.33 0.85 16 13 C 0.49 20.95 7.74 87.66 0.68 21.62 16 14 O -0.59 -32.51 16.01 -3.04 -0.05 -32.56 16 15 N -0.61 -25.78 2.46 -826.18 -2.03 -27.81 16 16 C 0.10 2.87 5.93 86.38 0.51 3.39 16 17 C -0.16 -3.72 10.24 71.98 0.74 -2.98 16 18 C 0.26 14.59 5.16 85.63 0.44 15.03 16 19 C -0.54 -31.72 9.39 25.60 0.24 -31.48 16 20 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 21 C 0.00 0.23 5.46 84.65 0.46 0.69 16 22 N -0.93 -57.69 13.29 21.45 0.28 -57.41 16 23 Si 0.97 45.93 29.54 68.60 2.03 47.95 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 25 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 26 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 27 C -0.01 -0.34 7.53 83.57 0.63 0.28 16 28 H 0.03 0.54 7.06 -2.39 -0.02 0.53 16 29 H 0.06 0.84 6.62 -2.39 -0.02 0.83 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.10 0.45 6.65 -2.38 -0.02 0.43 16 32 H 0.08 0.41 7.53 -2.39 -0.02 0.39 16 33 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.05 0.97 6.26 -2.39 -0.01 0.96 16 35 H 0.05 0.91 7.95 -2.38 -0.02 0.89 16 36 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.07 0.45 6.63 -2.39 -0.02 0.43 16 38 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.42 2.71 8.15 -92.70 -0.76 1.95 16 40 H 0.10 2.73 7.45 -2.38 -0.02 2.71 16 41 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.11 0.92 7.90 -2.38 -0.02 0.90 16 43 H 0.13 2.56 7.13 -2.39 -0.02 2.54 16 44 H 0.10 2.00 6.56 -2.39 -0.02 1.98 16 45 H 0.07 2.19 8.07 -2.39 -0.02 2.17 16 46 H 0.10 2.09 6.44 -2.38 -0.02 2.08 16 47 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.06 1.29 7.22 -2.38 -0.02 1.28 16 49 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 50 H 0.02 1.19 8.07 -2.38 -0.02 1.18 16 51 H -0.01 -0.62 7.42 -2.39 -0.02 -0.64 16 52 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 53 H 0.09 1.98 7.42 -2.39 -0.02 1.96 16 54 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -89.71 425.45 -0.44 -90.15 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.12 Total: 13.04 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: 7.01 Total: 15.99 kcal Atomic # 7 Polarization: -107.10 SS G_CDS: -9.50 Total: -116.60 kcal Atomic # 8 Polarization: -50.44 SS G_CDS: -0.10 Total: -50.53 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.95 kcal Total: -89.71 -0.44 -90.15 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001391408924.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.687 kcal (2) G-P(sol) polarization free energy of solvation -89.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds