Wall clock time and date at job start Sat Apr 11 2020 05:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.47305 * 2 1 4 4 C 1.46497 * 120.00322 * 270.00146 * 3 2 1 5 5 C 1.50707 * 109.47162 * 269.99844 * 4 3 2 6 6 H 1.07998 * 119.99576 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99930 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99982 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47241 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47303 * 119.99759 * 9 7 5 12 12 H 1.48495 * 109.47340 * 239.99921 * 9 7 5 13 13 C 1.34780 * 120.00111 * 89.99580 * 3 2 1 14 14 O 1.21280 * 120.00423 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99795 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.46921 * 179.97438 * 15 13 3 17 17 C 1.47480 * 111.00171 * 265.96874 * 16 15 13 18 18 C 1.53513 * 87.93170 * 221.29782 * 17 16 15 19 19 N 1.46493 * 114.34506 * 272.36508 * 18 17 16 20 20 C 1.34784 * 119.99875 * 248.92376 * 19 18 17 21 21 O 1.21274 * 120.00044 * 0.02562 * 20 19 18 22 22 C 1.50700 * 119.99706 * 179.97438 * 20 19 18 23 23 C 1.53002 * 109.47568 * 300.00147 * 22 20 19 24 24 C 1.53002 * 109.46971 * 60.00551 * 22 20 19 25 25 C 1.52998 * 109.46746 * 180.02562 * 22 20 19 26 26 C 1.53008 * 109.46943 * 180.02562 * 25 22 20 27 27 C 1.47482 * 110.99764 * 169.99672 * 16 15 13 28 28 H 1.09001 * 109.47263 * 299.99631 * 1 2 3 29 29 H 1.08996 * 109.47107 * 60.00334 * 1 2 3 30 30 H 1.09005 * 109.47062 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47320 * 239.99881 * 2 1 3 32 32 H 1.09002 * 109.47139 * 120.00107 * 2 1 3 33 33 H 1.09000 * 109.47018 * 29.99405 * 4 3 2 34 34 H 1.09000 * 109.47828 * 149.99700 * 4 3 2 35 35 H 0.97001 * 119.99961 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.47060 * 299.99722 * 15 13 3 37 37 H 1.09001 * 109.47380 * 59.99809 * 15 13 3 38 38 H 1.08999 * 113.47664 * 336.06792 * 17 16 15 39 39 H 1.08994 * 113.47488 * 106.52987 * 17 16 15 40 40 H 1.08998 * 114.16723 * 139.66940 * 18 17 16 41 41 H 0.96998 * 120.00117 * 68.92512 * 19 18 17 42 42 H 1.09004 * 109.46847 * 59.99914 * 23 22 20 43 43 H 1.08997 * 109.47431 * 180.02562 * 23 22 20 44 44 H 1.09002 * 109.46803 * 300.00682 * 23 22 20 45 45 H 1.08995 * 109.47445 * 59.99837 * 24 22 20 46 46 H 1.09005 * 109.46802 * 179.97438 * 24 22 20 47 47 H 1.08999 * 109.46771 * 299.99062 * 24 22 20 48 48 H 1.08995 * 109.47310 * 299.99943 * 25 22 20 49 49 H 1.09003 * 109.47636 * 60.00362 * 25 22 20 50 50 H 1.08998 * 109.47343 * 60.00189 * 26 25 22 51 51 H 1.09005 * 109.46788 * 179.97438 * 26 25 22 52 52 H 1.08999 * 109.46857 * 299.99425 * 26 25 22 53 53 H 1.08994 * 113.48196 * 253.46980 * 27 16 15 54 54 H 1.09003 * 113.47819 * 23.94188 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 3.3489 3.1249 -3.6185 9 14 5.9132 2.0955 -3.4175 10 1 6.6009 1.2405 -2.4169 11 1 5.9202 1.4163 -4.7380 12 1 6.6210 3.3964 -3.5262 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9922 1.3059 2.4723 16 7 2.3108 2.2058 3.5889 17 6 3.6958 2.0024 4.0530 18 6 3.1733 2.1272 5.4910 19 7 3.1232 3.5006 5.9983 20 6 3.9661 3.8892 6.9756 21 8 4.7662 3.1020 7.4348 22 6 3.9149 5.3022 7.4970 23 6 4.1995 6.2784 6.3537 24 6 2.5258 5.5831 8.0736 25 6 4.9679 5.4799 8.5926 26 6 4.9156 6.9144 9.1225 27 6 1.8567 1.6375 4.8718 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.5818 1.6876 -2.0283 34 1 2.0956 3.1410 -1.1384 35 1 3.6747 3.5148 -4.4447 36 1 0.9443 1.0114 2.5302 37 1 2.6227 0.4186 2.5299 38 1 4.0915 1.0140 3.8190 39 1 4.3727 2.8069 3.7655 40 1 3.6248 1.4256 6.1924 41 1 2.4835 4.1304 5.6308 42 1 3.4496 6.1519 5.5728 43 1 4.1630 7.3004 6.7309 44 1 5.1891 6.0782 5.9429 45 1 2.3231 4.8877 8.8881 46 1 2.4890 6.6050 8.4511 47 1 1.7760 5.4567 7.2927 48 1 4.7656 4.7845 9.4072 49 1 5.9575 5.2800 8.1816 50 1 3.9261 7.1140 9.5337 51 1 5.6655 7.0408 9.9034 52 1 5.1178 7.6100 8.3081 53 1 0.9750 2.1328 5.2783 54 1 1.7616 0.5517 4.8564 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001391439188.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:48 Heat of formation + Delta-G solvation = -69.980162 kcal Electronic energy + Delta-G solvation = -30511.974375 eV Core-core repulsion = 26483.696211 eV Total energy + Delta-G solvation = -4028.278164 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.94022 -40.88798 -39.93557 -37.28502 -36.86634 -35.13479 -34.85077 -31.94255 -31.45160 -30.63881 -28.96313 -28.29114 -26.98564 -26.39941 -25.67851 -24.58928 -23.80399 -22.92298 -20.84985 -20.16032 -19.77074 -18.64252 -17.98560 -17.92395 -17.49339 -17.20777 -16.69145 -16.53586 -16.22081 -15.92010 -15.76548 -15.25443 -15.04108 -14.90385 -14.85356 -14.61059 -14.25614 -13.90142 -13.85590 -13.60560 -13.53156 -13.48202 -13.25932 -13.11460 -12.96671 -12.80644 -12.72160 -12.68229 -12.56326 -12.47959 -12.30212 -12.16641 -12.14365 -11.89464 -11.79981 -11.69553 -11.54524 -11.53576 -10.74184 -10.66882 -10.55447 -10.09495 -9.78388 -9.40020 -8.24059 -6.38844 1.33109 1.35848 1.47231 1.57338 1.90835 2.10511 2.25564 2.40336 3.04745 3.07402 3.41026 3.59170 3.67744 3.75196 3.83536 3.90001 4.05484 4.11124 4.19711 4.32609 4.35146 4.44231 4.45271 4.47183 4.55317 4.60296 4.65061 4.68330 4.75219 4.76640 4.79614 4.89957 4.93239 4.94662 5.00193 5.05807 5.07872 5.11688 5.13008 5.21829 5.24297 5.26473 5.40228 5.40869 5.49357 5.55310 5.57546 5.83525 5.93886 6.06183 6.53091 6.70069 6.86114 7.20680 7.27986 7.57634 8.82966 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012660 B = 0.002468 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.072474 B =11341.484551 C =12624.608735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.608 5.608 4 C 0.264 3.736 5 C -0.539 4.539 6 H 0.050 0.950 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.966 3.034 10 H -0.268 1.268 11 H -0.267 1.267 12 H -0.282 1.282 13 C 0.496 3.504 14 O -0.584 6.584 15 C 0.015 3.985 16 N -0.474 5.474 17 C -0.017 4.017 18 C 0.121 3.879 19 N -0.694 5.694 20 C 0.521 3.479 21 O -0.583 6.583 22 C -0.077 4.077 23 C -0.143 4.143 24 C -0.139 4.139 25 C -0.098 4.098 26 C -0.151 4.151 27 C 0.006 3.994 28 H 0.062 0.938 29 H 0.035 0.965 30 H 0.096 0.904 31 H 0.069 0.931 32 H 0.101 0.899 33 H 0.020 0.980 34 H -0.007 1.007 35 H 0.267 0.733 36 H 0.129 0.871 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.053 0.947 40 H 0.112 0.888 41 H 0.413 0.587 42 H 0.062 0.938 43 H 0.092 0.908 44 H 0.043 0.957 45 H 0.059 0.941 46 H 0.089 0.911 47 H 0.068 0.932 48 H 0.059 0.941 49 H 0.047 0.953 50 H 0.072 0.928 51 H 0.059 0.941 52 H 0.063 0.937 53 H 0.107 0.893 54 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.232 -2.317 25.002 25.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.340 5.340 4 C 0.142 3.858 5 C -0.577 4.577 6 H 0.069 0.931 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.791 3.209 10 H -0.192 1.192 11 H -0.192 1.192 12 H -0.208 1.208 13 C 0.284 3.716 14 O -0.463 6.463 15 C -0.116 4.116 16 N -0.196 5.196 17 C -0.147 4.147 18 C 0.014 3.986 19 N -0.344 5.344 20 C 0.309 3.691 21 O -0.463 6.463 22 C -0.080 4.080 23 C -0.200 4.200 24 C -0.196 4.196 25 C -0.136 4.136 26 C -0.208 4.208 27 C -0.122 4.122 28 H 0.081 0.919 29 H 0.054 0.946 30 H 0.114 0.886 31 H 0.087 0.913 32 H 0.119 0.881 33 H 0.038 0.962 34 H 0.011 0.989 35 H 0.076 0.924 36 H 0.147 0.853 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.072 0.928 40 H 0.130 0.870 41 H 0.250 0.750 42 H 0.081 0.919 43 H 0.110 0.890 44 H 0.062 0.938 45 H 0.078 0.922 46 H 0.108 0.892 47 H 0.087 0.913 48 H 0.077 0.923 49 H 0.066 0.934 50 H 0.091 0.909 51 H 0.078 0.922 52 H 0.082 0.918 53 H 0.125 0.875 54 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.738 -1.547 24.885 25.585 hybrid contribution 1.116 -0.409 -1.304 1.764 sum -4.621 -1.956 23.581 24.109 Atomic orbital electron populations 1.22151 0.94517 1.03473 1.01678 1.21735 0.95348 0.81361 1.03796 1.48310 1.64413 1.15112 1.06177 1.18639 0.95107 0.91382 0.80627 1.21721 0.97911 1.31763 1.06350 0.93126 1.25859 1.02336 0.94551 0.96516 1.70059 1.37649 1.34348 1.14799 0.85388 0.79098 0.77989 0.78449 1.19234 1.19242 1.20837 1.21242 0.77363 0.86696 0.86303 1.90632 1.47167 1.20637 1.87878 1.22662 1.05098 0.94810 0.89065 1.68788 1.06814 1.42331 1.01698 1.24451 0.92912 1.01694 0.95640 1.21913 0.98011 0.85011 0.93679 1.45560 1.38503 1.12647 1.37725 1.21196 0.79022 0.90566 0.78290 1.90653 1.39219 1.56071 1.60307 1.20843 0.99652 0.90167 0.97378 1.21945 1.01581 0.99904 0.96615 1.21926 0.92471 1.03823 1.01366 1.21322 0.97112 0.98526 0.96658 1.21902 1.02912 0.94704 1.01310 1.24325 0.98005 1.01617 0.88275 0.91924 0.94565 0.88573 0.91293 0.88123 0.96177 0.98913 0.92425 0.85294 0.88745 0.89140 0.92825 0.87047 0.74986 0.91901 0.88954 0.93771 0.92160 0.89224 0.91253 0.92262 0.93430 0.90926 0.92194 0.91820 0.87493 0.86940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.74 10.24 71.98 0.74 -3.00 16 2 C 0.10 2.93 5.93 86.38 0.51 3.44 16 3 N -0.61 -25.66 2.46 -826.16 -2.03 -27.69 16 4 C 0.26 14.52 5.16 85.64 0.44 14.96 16 5 C -0.54 -31.63 9.39 25.60 0.24 -31.39 16 6 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 7 C 0.01 0.36 5.46 84.65 0.46 0.82 16 8 N -0.93 -57.14 13.29 21.45 0.28 -56.85 16 9 Si 0.97 45.80 29.54 68.60 2.03 47.83 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 12 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 13 C 0.50 20.59 7.74 87.66 0.68 21.26 16 14 O -0.58 -31.11 16.01 -3.03 -0.05 -31.15 16 15 C 0.01 0.39 3.85 85.56 0.33 0.72 16 16 N -0.47 -12.26 5.82 -932.48 -5.43 -17.69 16 17 C -0.02 -0.43 7.53 83.58 0.63 0.20 16 18 C 0.12 2.47 4.59 45.45 0.21 2.68 16 19 N -0.69 -14.39 5.18 -441.70 -2.29 -16.67 16 20 C 0.52 12.21 6.48 87.66 0.57 12.77 16 21 O -0.58 -18.05 15.57 -3.01 -0.05 -18.09 16 22 C -0.08 -1.32 0.64 -52.93 -0.03 -1.36 16 23 C -0.14 -2.39 8.02 71.98 0.58 -1.81 16 24 C -0.14 -1.62 8.02 71.98 0.58 -1.04 16 25 C -0.10 -1.73 4.28 30.60 0.13 -1.60 16 26 C -0.15 -1.80 9.21 71.98 0.66 -1.14 16 27 C 0.01 0.10 7.45 83.58 0.62 0.72 16 28 H 0.06 1.31 7.22 -2.39 -0.02 1.30 16 29 H 0.04 1.02 8.14 -2.39 -0.02 1.01 16 30 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.07 2.20 8.07 -2.38 -0.02 2.18 16 32 H 0.10 2.16 6.44 -2.39 -0.02 2.15 16 33 H 0.02 1.13 8.07 -2.39 -0.02 1.11 16 34 H -0.01 -0.47 7.42 -2.39 -0.02 -0.48 16 35 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 36 H 0.13 2.53 7.13 -2.39 -0.02 2.51 16 37 H 0.09 2.01 6.56 -2.39 -0.02 2.00 16 38 H 0.09 2.08 7.42 -2.39 -0.02 2.06 16 39 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.11 2.30 7.45 -2.39 -0.02 2.29 16 41 H 0.41 7.66 7.60 -92.71 -0.70 6.95 16 42 H 0.06 1.07 7.57 -2.38 -0.02 1.05 16 43 H 0.09 1.15 6.43 -2.39 -0.02 1.13 16 44 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.06 0.72 8.14 -2.39 -0.02 0.71 16 46 H 0.09 0.75 6.43 -2.38 -0.02 0.73 16 47 H 0.07 0.71 7.56 -2.39 -0.02 0.69 16 48 H 0.06 1.13 8.10 -2.39 -0.02 1.11 16 49 H 0.05 1.03 8.10 -2.39 -0.02 1.01 16 50 H 0.07 0.66 6.43 -2.39 -0.02 0.65 16 51 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 52 H 0.06 0.71 6.43 -2.39 -0.02 0.69 16 53 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 54 H 0.11 1.15 7.91 -2.39 -0.02 1.13 16 Total: -1.00 -83.83 424.61 -0.01 -83.84 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: 0.18 Total: 20.24 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: 7.34 Total: 16.24 kcal Atomic # 7 Polarization: -109.45 SS G_CDS: -9.46 Total: -118.90 kcal Atomic # 8 Polarization: -49.15 SS G_CDS: -0.10 Total: -49.25 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -83.83 -0.01 -83.84 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001391439188.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.861 kcal (2) G-P(sol) polarization free energy of solvation -83.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds