Wall clock time and date at job start Sat Apr 11 2020 05:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21285 * 119.99820 * 2 1 4 4 N 1.34777 * 120.00198 * 179.97438 * 2 1 3 5 5 C 1.46496 * 119.99877 * 185.54127 * 4 2 1 6 6 C 1.52997 * 109.47239 * 55.85303 * 5 4 2 7 7 C 1.50703 * 109.47383 * 295.84788 * 5 4 2 8 8 O 1.21277 * 119.99917 * 144.99856 * 7 5 4 9 9 N 1.34774 * 119.99948 * 325.00703 * 7 5 4 10 10 C 1.46503 * 120.00088 * 179.97438 * 9 7 5 11 11 H 1.08994 * 109.46733 * 34.99654 * 10 9 7 12 12 C 1.52999 * 109.47066 * 274.99848 * 10 9 7 13 13 C 1.52995 * 109.47005 * 179.97438 * 12 10 9 14 14 C 1.53007 * 109.47350 * 60.00121 * 13 12 10 15 15 C 1.52999 * 109.46594 * 299.99893 * 14 13 12 16 16 C 1.53000 * 109.46891 * 154.99613 * 10 9 7 17 17 H 1.09001 * 109.47251 * 60.00138 * 16 10 9 18 18 N 1.46499 * 109.47356 * 299.99895 * 16 10 9 19 19 C 1.36933 * 119.99702 * 155.00497 * 18 16 10 20 20 H 1.08003 * 120.00432 * 359.97438 * 19 18 16 21 21 C 1.38817 * 120.00054 * 180.02562 * 19 18 16 22 22 N 1.31613 * 120.00675 * 179.97438 * 21 19 18 23 23 Si 1.86808 * 119.99689 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.47074 * 89.99990 * 23 21 19 25 25 H 1.48501 * 109.46919 * 210.00323 * 23 21 19 26 26 H 1.48504 * 109.47054 * 329.99964 * 23 21 19 27 27 C 1.53009 * 109.46856 * 175.85132 * 5 4 2 28 28 C 1.52996 * 109.46759 * 304.50642 * 27 5 4 29 29 C 1.52995 * 109.47178 * 64.50815 * 27 5 4 30 30 H 1.09005 * 109.46815 * 270.00095 * 1 2 3 31 31 H 1.08999 * 109.46980 * 30.00149 * 1 2 3 32 32 H 1.09000 * 109.47107 * 150.00247 * 1 2 3 33 33 H 0.97000 * 119.99527 * 5.54473 * 4 2 1 34 34 H 1.08994 * 109.46993 * 299.99568 * 6 5 4 35 35 H 1.08993 * 109.47251 * 59.99920 * 6 5 4 36 36 H 1.09001 * 109.47139 * 179.97438 * 6 5 4 37 37 H 0.97006 * 120.00353 * 359.97438 * 9 7 5 38 38 H 1.09001 * 109.47007 * 299.99819 * 12 10 9 39 39 H 1.08997 * 109.46884 * 59.99380 * 12 10 9 40 40 H 1.09004 * 109.47123 * 179.97438 * 13 12 10 41 41 H 1.08997 * 109.47534 * 300.00180 * 13 12 10 42 42 H 1.09001 * 109.47200 * 59.99713 * 14 13 12 43 43 H 1.08993 * 109.47298 * 179.97438 * 14 13 12 44 44 H 1.08997 * 109.47316 * 299.99344 * 15 14 13 45 45 H 1.09009 * 109.46897 * 179.97438 * 15 14 13 46 46 H 0.96997 * 120.00309 * 335.00384 * 18 16 10 47 47 H 0.96998 * 120.00588 * 179.97438 * 22 21 19 48 48 H 1.08996 * 109.46868 * 184.50866 * 27 5 4 49 49 H 1.09005 * 109.46637 * 174.98140 * 28 27 5 50 50 H 1.08999 * 109.47363 * 294.98314 * 28 27 5 51 51 H 1.08997 * 109.47107 * 54.99265 * 28 27 5 52 52 H 1.09000 * 109.47327 * 59.99622 * 29 27 5 53 53 H 1.08995 * 109.47626 * 180.02562 * 29 27 5 54 54 H 1.09006 * 109.47456 * 300.00362 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1672 0.0005 5 6 3.6408 -1.1700 0.1230 6 6 4.0475 -0.4193 1.3926 7 6 4.2471 -0.4911 -1.0780 8 8 5.2549 0.1723 -0.9552 9 7 3.6692 -0.6209 -2.2887 10 6 4.2583 0.0395 -3.4562 11 1 5.3444 0.0377 -3.3650 12 6 3.7553 1.4824 -3.5336 13 6 4.3710 2.1724 -4.7525 14 6 3.9650 1.4219 -6.0226 15 6 4.4679 -0.0210 -5.9451 16 6 3.8517 -0.7112 -4.7259 17 1 2.7655 -0.7094 -4.8170 18 7 4.3333 -2.0928 -4.6517 19 6 3.7013 -3.0772 -5.3635 20 1 2.8476 -2.8352 -5.9792 21 6 4.1573 -4.3864 -5.2928 22 7 3.5496 -5.3328 -5.9765 23 14 5.6335 -4.8051 -4.2273 24 1 5.1734 -5.1539 -2.8592 25 1 6.3570 -5.9607 -4.8160 26 1 6.5435 -3.6335 -4.1599 27 6 4.1432 -2.6132 0.2007 28 6 3.4425 -3.3357 1.3530 29 6 3.8354 -3.3319 -1.1144 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3633 -0.8900 -0.5138 33 1 1.6993 -2.0053 -0.0803 34 1 3.6896 0.6087 1.3373 35 1 3.6091 -0.9104 2.2613 36 1 5.1337 -0.4219 1.4840 37 1 2.8632 -1.1517 -2.3870 38 1 2.6691 1.4842 -3.6247 39 1 4.0449 2.0171 -2.6290 40 1 4.0123 3.2002 -4.8080 41 1 5.4571 2.1706 -4.6611 42 1 2.8788 1.4237 -6.1141 43 1 4.4032 1.9137 -6.8910 44 1 5.5541 -0.0227 -5.8536 45 1 4.1783 -0.5558 -6.8497 46 1 5.0998 -2.3102 -4.0985 47 1 3.8685 -6.2476 -5.9274 48 1 5.2196 -2.6143 0.3721 49 1 3.7330 -4.3863 1.3532 50 1 3.7328 -2.8782 2.2988 51 1 2.3626 -3.2575 1.2277 52 1 4.3345 -2.8170 -1.9353 53 1 4.1929 -4.3600 -1.0589 54 1 2.7589 -3.3306 -1.2859 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479208318.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:52 Heat of formation + Delta-G solvation = -101.586688 kcal Electronic energy + Delta-G solvation = -33532.320441 eV Core-core repulsion = 29502.671715 eV Total energy + Delta-G solvation = -4029.648726 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.17238 -40.38463 -39.29135 -37.77852 -35.93877 -35.16171 -34.11635 -33.31643 -31.83466 -30.79889 -29.88555 -29.60746 -28.04696 -25.63788 -25.25546 -23.58236 -22.50609 -22.10423 -21.77579 -21.21176 -20.32566 -19.59616 -18.57561 -18.12184 -17.41158 -16.81193 -16.42958 -16.26291 -15.87173 -15.61839 -15.43396 -15.37498 -15.09962 -14.85147 -14.73040 -14.64503 -14.45266 -14.21876 -13.81171 -13.69798 -13.58213 -13.34571 -13.29618 -13.19250 -13.09617 -12.95850 -12.83911 -12.71626 -12.43909 -12.26317 -12.19017 -12.11470 -11.88017 -11.85112 -11.76362 -11.71182 -11.52706 -11.19988 -11.08701 -10.89396 -10.76395 -10.05331 -9.93794 -9.28807 -7.98908 -5.30615 1.35082 1.39587 1.43510 1.55404 1.65966 2.15683 2.28025 2.48270 3.32402 3.42544 3.49358 3.61451 3.70615 3.79522 3.95019 4.03620 4.12349 4.17203 4.20621 4.31522 4.36603 4.42047 4.42931 4.52089 4.54243 4.63190 4.67133 4.71034 4.71727 4.78976 4.84885 4.88677 4.95521 4.97981 5.09179 5.10049 5.13333 5.17294 5.22373 5.22409 5.25797 5.32876 5.36900 5.40695 5.42728 5.50236 5.63177 5.81100 6.23853 6.50368 6.61473 7.08885 7.23460 7.28641 7.84580 8.04300 9.22146 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.008973 B = 0.005916 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3119.827246 B = 4731.979418 C = 6515.060220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.504 3.496 3 O -0.577 6.577 4 N -0.711 5.711 5 C 0.172 3.828 6 C -0.142 4.142 7 C 0.518 3.482 8 O -0.584 6.584 9 N -0.699 5.699 10 C 0.145 3.855 11 H 0.057 0.943 12 C -0.109 4.109 13 C -0.110 4.110 14 C -0.109 4.109 15 C -0.129 4.129 16 C 0.180 3.820 17 H 0.059 0.941 18 N -0.743 5.743 19 C -0.213 4.213 20 H 0.065 0.935 21 C -0.046 4.046 22 N -0.978 5.978 23 Si 0.928 3.072 24 H -0.254 1.254 25 H -0.308 1.308 26 H -0.278 1.278 27 C -0.088 4.088 28 C -0.139 4.139 29 C -0.163 4.163 30 H 0.115 0.885 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.418 0.582 34 H 0.056 0.944 35 H 0.092 0.908 36 H 0.061 0.939 37 H 0.405 0.595 38 H 0.068 0.932 39 H 0.045 0.955 40 H 0.082 0.918 41 H 0.056 0.944 42 H 0.068 0.932 43 H 0.076 0.924 44 H 0.048 0.952 45 H 0.052 0.948 46 H 0.358 0.642 47 H 0.255 0.745 48 H 0.078 0.922 49 H 0.068 0.932 50 H 0.072 0.928 51 H 0.076 0.924 52 H 0.042 0.958 53 H 0.058 0.942 54 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.789 8.980 14.878 18.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.293 3.707 3 O -0.456 6.456 4 N -0.369 5.369 5 C 0.082 3.918 6 C -0.200 4.200 7 C 0.304 3.696 8 O -0.464 6.464 9 N -0.348 5.348 10 C 0.040 3.960 11 H 0.075 0.925 12 C -0.148 4.148 13 C -0.148 4.148 14 C -0.147 4.147 15 C -0.170 4.170 16 C 0.071 3.929 17 H 0.077 0.923 18 N -0.385 5.385 19 C -0.344 4.344 20 H 0.083 0.917 21 C -0.238 4.238 22 N -0.629 5.629 23 Si 0.758 3.242 24 H -0.179 1.179 25 H -0.236 1.236 26 H -0.204 1.204 27 C -0.108 4.108 28 C -0.196 4.196 29 C -0.220 4.220 30 H 0.133 0.867 31 H 0.108 0.892 32 H 0.123 0.877 33 H 0.258 0.742 34 H 0.075 0.925 35 H 0.111 0.889 36 H 0.080 0.920 37 H 0.241 0.759 38 H 0.087 0.913 39 H 0.064 0.936 40 H 0.101 0.899 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.094 0.906 44 H 0.067 0.933 45 H 0.070 0.930 46 H 0.191 0.809 47 H 0.064 0.936 48 H 0.096 0.904 49 H 0.087 0.913 50 H 0.091 0.909 51 H 0.094 0.906 52 H 0.061 0.939 53 H 0.077 0.923 54 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.831 10.077 14.843 18.864 hybrid contribution 0.875 -1.320 -0.080 1.586 sum -4.955 8.756 14.762 17.865 Atomic orbital electron populations 1.21914 0.87944 1.06102 1.06396 1.21669 0.92266 0.82747 0.73988 1.90744 1.71633 1.32914 1.50276 1.46247 1.05338 1.10149 1.75192 1.20453 0.81662 0.96792 0.92895 1.21968 1.02000 1.00827 0.95179 1.21182 0.83638 0.79591 0.85224 1.90624 1.27351 1.42434 1.85964 1.45928 1.30178 1.51704 1.07024 1.21169 0.97454 0.92556 0.84867 0.92458 1.21703 1.00811 0.93849 0.98432 1.21478 1.00392 0.99499 0.93383 1.21499 1.01410 0.93956 0.97815 1.22080 1.00014 0.96137 0.98721 1.20586 0.97456 0.82832 0.91998 0.92348 1.42759 1.35934 1.04031 1.55818 1.18940 1.08979 0.87277 1.19216 0.91682 1.25148 1.01244 0.95839 1.01564 1.69833 1.44475 1.01020 1.47540 0.85882 0.81010 0.76676 0.80627 1.17916 1.23586 1.20410 1.21342 1.01459 0.90385 0.97574 1.21851 1.01110 1.00382 0.96289 1.22155 1.02967 1.00649 0.96276 0.86667 0.89197 0.87659 0.74181 0.92514 0.88925 0.92021 0.75906 0.91301 0.93592 0.89912 0.92533 0.91290 0.90573 0.93330 0.92956 0.80905 0.93585 0.90399 0.91303 0.90934 0.90555 0.93905 0.92259 0.90713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 10.31 71.24 0.73 -1.18 16 2 C 0.50 10.67 7.30 87.66 0.64 11.31 16 3 O -0.58 -18.04 14.31 -3.05 -0.04 -18.08 16 4 N -0.71 -13.36 3.69 -426.31 -1.57 -14.93 16 5 C 0.17 4.31 0.39 2.86 0.00 4.31 16 6 C -0.14 -3.55 7.61 71.98 0.55 -3.00 16 7 C 0.52 17.55 4.58 87.66 0.40 17.96 16 8 O -0.58 -24.35 15.76 -3.02 -0.05 -24.39 16 9 N -0.70 -22.66 3.48 -442.54 -1.54 -24.20 16 10 C 0.15 4.96 1.98 44.99 0.09 5.05 16 11 H 0.06 2.25 7.58 -2.39 -0.02 2.24 16 12 C -0.11 -3.28 5.49 30.59 0.17 -3.11 16 13 C -0.11 -2.80 5.92 30.59 0.18 -2.62 16 14 C -0.11 -2.80 5.92 30.60 0.18 -2.62 16 15 C -0.13 -4.33 5.50 30.61 0.17 -4.17 16 16 C 0.18 6.53 2.30 45.01 0.10 6.63 16 17 H 0.06 2.14 8.08 -2.39 -0.02 2.12 16 18 N -0.74 -32.65 4.76 -322.85 -1.54 -34.18 16 19 C -0.21 -11.20 10.41 84.04 0.87 -10.33 16 20 H 0.07 3.73 8.06 -2.91 -0.02 3.70 16 21 C -0.05 -2.56 5.50 84.86 0.47 -2.09 16 22 N -0.98 -59.51 13.97 21.65 0.30 -59.21 16 23 Si 0.93 44.22 27.73 68.60 1.90 46.13 16 24 H -0.25 -11.05 6.28 99.48 0.62 -10.43 16 25 H -0.31 -15.34 7.11 99.48 0.71 -14.63 16 26 H -0.28 -13.02 6.52 99.48 0.65 -12.37 16 27 C -0.09 -1.99 2.26 -10.79 -0.02 -2.02 16 28 C -0.14 -2.05 8.67 71.98 0.62 -1.43 16 29 C -0.16 -4.49 8.03 71.98 0.58 -3.91 16 30 H 0.12 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.42 5.42 6.17 -92.71 -0.57 4.85 16 34 H 0.06 1.73 6.06 -2.39 -0.01 1.72 16 35 H 0.09 1.70 6.66 -2.39 -0.02 1.68 16 36 H 0.06 1.67 7.87 -2.39 -0.02 1.65 16 37 H 0.41 12.28 7.40 -92.70 -0.69 11.59 16 38 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 41 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 46 H 0.36 16.28 5.47 -92.71 -0.51 15.77 16 47 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 48 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 49 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 50 H 0.07 0.93 6.80 -2.39 -0.02 0.91 16 51 H 0.08 0.84 6.54 -2.39 -0.02 0.82 16 52 H 0.04 1.46 6.07 -2.39 -0.01 1.44 16 53 H 0.06 1.70 7.40 -2.39 -0.02 1.68 16 54 H 0.07 1.77 7.06 -2.38 -0.02 1.75 16 Total: -1.00 -74.22 407.17 2.20 -72.02 By element: Atomic # 1 Polarization: 49.07 SS G_CDS: -1.00 Total: 48.07 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: 5.74 Total: 8.78 kcal Atomic # 7 Polarization: -128.17 SS G_CDS: -4.35 Total: -132.51 kcal Atomic # 8 Polarization: -42.39 SS G_CDS: -0.09 Total: -42.48 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 1.90 Total: 46.13 kcal Total: -74.22 2.20 -72.02 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479208318.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.570 kcal (2) G-P(sol) polarization free energy of solvation -74.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds