Wall clock time and date at job start Sat Apr 11 2020 05:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47275 * 2 1 4 4 C 1.52999 * 109.46732 * 67.59190 * 3 2 1 5 5 C 1.53004 * 109.46835 * 185.93102 * 4 3 2 6 6 C 1.53000 * 109.46938 * 187.59162 * 3 2 1 7 7 H 1.08992 * 109.46956 * 175.36080 * 6 3 2 8 8 C 1.52998 * 109.47363 * 55.35526 * 6 3 2 9 9 C 1.50700 * 109.47104 * 295.35624 * 6 3 2 10 10 O 1.21285 * 120.00197 * 25.49355 * 9 6 3 11 11 N 1.34775 * 119.99879 * 205.48799 * 9 6 3 12 12 C 1.47022 * 125.64988 * 354.30243 * 11 9 6 13 13 C 1.54333 * 107.26536 * 178.84925 * 12 11 9 14 14 C 1.55156 * 103.02327 * 338.14423 * 13 12 11 15 15 H 1.09006 * 111.00507 * 277.23090 * 14 13 12 16 16 N 1.46895 * 111.03959 * 153.39554 * 14 13 12 17 17 C 1.46901 * 111.00008 * 92.78516 * 16 14 13 18 18 C 1.50708 * 109.47051 * 179.97438 * 17 16 14 19 19 O 1.21298 * 119.99851 * 0.02562 * 18 17 16 20 20 N 1.34778 * 120.00042 * 179.97438 * 18 17 16 21 21 C 1.37094 * 120.00003 * 180.02562 * 20 18 17 22 22 H 1.07998 * 119.99933 * 359.97438 * 21 20 18 23 23 C 1.38942 * 119.99948 * 179.97438 * 21 20 18 24 24 N 1.31416 * 120.00217 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00194 * 180.02562 * 23 21 20 26 26 H 1.48489 * 109.47287 * 89.99890 * 25 23 21 27 27 H 1.48500 * 109.47047 * 210.00086 * 25 23 21 28 28 H 1.48505 * 109.47054 * 329.99785 * 25 23 21 29 29 C 1.47434 * 125.64675 * 174.61200 * 11 9 6 30 30 H 1.09003 * 109.47660 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47403 * 299.99850 * 1 2 3 32 32 H 1.09004 * 109.47417 * 60.00149 * 1 2 3 33 33 H 1.08995 * 109.46991 * 239.99725 * 2 1 3 34 34 H 1.09001 * 109.46901 * 120.00397 * 2 1 3 35 35 H 1.08995 * 109.47091 * 307.59084 * 3 2 1 36 36 H 1.08996 * 109.47751 * 305.92871 * 4 3 2 37 37 H 1.08999 * 109.47258 * 65.93840 * 4 3 2 38 38 H 1.09000 * 109.47024 * 63.37012 * 5 4 3 39 39 H 1.08993 * 109.47432 * 183.37348 * 5 4 3 40 40 H 1.09002 * 109.46811 * 303.37596 * 5 4 3 41 41 H 1.09001 * 109.47546 * 291.48584 * 8 6 3 42 42 H 1.09001 * 109.47518 * 171.47975 * 8 6 3 43 43 H 1.09012 * 109.46873 * 51.48362 * 8 6 3 44 44 H 1.08998 * 109.88208 * 298.39524 * 12 11 9 45 45 H 1.08998 * 109.87540 * 59.56280 * 12 11 9 46 46 H 1.09003 * 110.85433 * 219.67542 * 13 12 11 47 47 H 1.08996 * 110.51809 * 96.45348 * 13 12 11 48 48 H 1.00907 * 111.00238 * 328.83115 * 16 14 13 49 49 H 1.09000 * 109.47402 * 299.99638 * 17 16 14 50 50 H 1.09000 * 109.47228 * 60.00529 * 17 16 14 51 51 H 0.96997 * 119.99594 * 0.02562 * 20 18 17 52 52 H 0.96998 * 120.00017 * 180.02562 * 24 23 21 53 53 H 1.08996 * 110.36432 * 322.93501 * 29 11 9 54 54 H 1.09008 * 110.36435 * 85.14617 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6915 2.1065 1.3336 5 6 2.0683 3.5885 1.2792 6 6 3.5581 1.4466 -0.1906 7 1 3.9111 2.4745 -0.2731 8 6 3.9140 0.6810 -1.4665 9 6 4.2147 0.7836 0.9927 10 8 3.6020 -0.0331 1.6475 11 7 5.4829 1.0980 1.3234 12 6 6.3767 1.9754 0.5535 13 6 7.7092 2.0644 1.3272 14 6 7.3001 1.6790 2.7734 15 1 6.8911 2.5377 3.3057 16 7 8.4345 1.1006 3.5058 17 6 9.1592 2.1349 4.2560 18 6 10.3129 1.5052 4.9934 19 8 10.5120 0.3122 4.9025 20 7 11.1240 2.2679 5.7530 21 6 12.1738 1.6951 6.4234 22 1 12.3506 0.6327 6.3431 23 6 13.0102 2.4814 7.2061 24 7 12.7948 3.7741 7.3041 25 14 14.4411 1.7012 8.1190 26 1 15.6477 1.7163 7.2536 27 1 14.7131 2.4682 9.3611 28 1 14.0998 0.2987 8.4681 29 6 6.2057 0.6139 2.5137 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8932 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.5701 1.9940 -0.8143 36 1 0.6218 2.0103 1.5190 37 1 2.2448 1.6204 2.1371 38 1 1.4715 4.0873 0.5155 39 1 1.8758 4.0482 2.2485 40 1 3.1261 3.6856 1.0345 41 1 3.6989 -0.3783 -1.3266 42 1 4.9741 0.8109 -1.6844 43 1 3.3226 1.0652 -2.2977 44 1 6.5482 1.5530 -0.4366 45 1 5.9351 2.9678 0.4641 46 1 8.1086 3.0781 1.2966 47 1 8.4311 1.3521 0.9279 48 1 9.0538 0.6059 2.8814 49 1 9.5373 2.8878 3.5643 50 1 8.4844 2.6049 4.9714 51 1 10.9649 3.2220 5.8254 52 1 13.3790 4.3231 7.8502 53 1 5.5304 0.5479 3.3667 54 1 6.6589 -0.3571 2.3134 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480112708.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:19 Heat of formation + Delta-G solvation = -109.029479 kcal Electronic energy + Delta-G solvation = -30166.532394 eV Core-core repulsion = 26136.560925 eV Total energy + Delta-G solvation = -4029.971470 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.60466 -40.24435 -39.32288 -37.44462 -36.19892 -35.57208 -33.33305 -33.17039 -32.66569 -31.41877 -29.93982 -27.85951 -27.20749 -25.96053 -24.85626 -23.51423 -23.42687 -22.01171 -21.45920 -21.06355 -19.92433 -19.66760 -18.11712 -17.75635 -17.45739 -16.82283 -16.34123 -16.14312 -16.12070 -15.76161 -15.55834 -15.46624 -15.12290 -14.93681 -14.67456 -14.55700 -14.16009 -14.07967 -13.90816 -13.75622 -13.48239 -13.35038 -13.18648 -13.05198 -12.96640 -12.89994 -12.75041 -12.60592 -12.53131 -12.44066 -12.41874 -12.32544 -12.12419 -11.80214 -11.72534 -11.68208 -11.50668 -11.14672 -11.06229 -10.38427 -10.29229 -10.01312 -9.64635 -9.31157 -8.46733 -5.95254 1.37996 1.42194 1.54603 1.66871 1.93287 2.05489 2.29789 2.91980 3.20688 3.36399 3.49602 3.67119 3.71996 3.86419 3.88942 4.02115 4.11000 4.25710 4.28785 4.33180 4.37373 4.41379 4.45729 4.50180 4.53692 4.59442 4.63738 4.67470 4.70741 4.78146 4.85635 4.89417 4.89711 4.93810 4.96520 5.02552 5.08459 5.11924 5.15867 5.22786 5.27656 5.36206 5.41213 5.41444 5.42360 5.53721 5.71928 5.88466 6.08990 6.35975 6.57744 6.60420 7.12951 7.23853 7.56559 8.12082 8.70467 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.027503 B = 0.001775 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.832791 B =15766.487068 C =15879.360617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.137 4.137 3 C -0.063 4.063 4 C -0.128 4.128 5 C -0.150 4.150 6 C -0.098 4.098 7 H 0.112 0.888 8 C -0.141 4.141 9 C 0.529 3.471 10 O -0.572 6.572 11 N -0.620 5.620 12 C 0.103 3.897 13 C -0.157 4.157 14 C 0.084 3.916 15 H 0.101 0.899 16 N -0.675 5.675 17 C 0.069 3.931 18 C 0.436 3.564 19 O -0.625 6.625 20 N -0.572 5.572 21 C -0.334 4.334 22 H 0.078 0.922 23 C -0.012 4.012 24 N -0.919 5.919 25 Si 0.992 3.008 26 H -0.270 1.270 27 H -0.271 1.271 28 H -0.275 1.275 29 C 0.119 3.881 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.097 0.903 36 H 0.064 0.936 37 H 0.041 0.959 38 H 0.069 0.931 39 H 0.047 0.953 40 H 0.055 0.945 41 H 0.048 0.952 42 H 0.068 0.932 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.093 0.907 46 H 0.104 0.896 47 H 0.078 0.922 48 H 0.350 0.650 49 H 0.077 0.923 50 H 0.103 0.897 51 H 0.397 0.603 52 H 0.278 0.722 53 H 0.058 0.942 54 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.889 4.519 -21.012 29.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.174 4.174 3 C -0.081 4.081 4 C -0.166 4.166 5 C -0.207 4.207 6 C -0.119 4.119 7 H 0.130 0.870 8 C -0.199 4.199 9 C 0.320 3.680 10 O -0.451 6.451 11 N -0.354 5.354 12 C -0.019 4.019 13 C -0.196 4.196 14 C -0.027 4.027 15 H 0.119 0.881 16 N -0.307 5.307 17 C -0.063 4.063 18 C 0.224 3.776 19 O -0.512 6.512 20 N -0.209 5.209 21 C -0.464 4.464 22 H 0.096 0.904 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.816 3.184 26 H -0.195 1.195 27 H -0.196 1.196 28 H -0.200 1.200 29 C -0.005 4.005 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.115 0.885 36 H 0.083 0.917 37 H 0.060 0.940 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.087 0.913 43 H 0.108 0.892 44 H 0.105 0.895 45 H 0.111 0.889 46 H 0.122 0.878 47 H 0.097 0.903 48 H 0.170 0.830 49 H 0.095 0.905 50 H 0.121 0.879 51 H 0.231 0.769 52 H 0.087 0.913 53 H 0.077 0.923 54 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.423 3.242 -20.090 29.548 hybrid contribution 1.274 0.225 0.401 1.355 sum -20.149 3.468 -19.689 28.384 Atomic orbital electron populations 1.21794 0.95687 1.01302 1.01781 1.21894 0.95893 0.96817 1.02772 1.21061 0.92335 0.96570 0.98160 1.21709 1.01411 0.96112 0.97366 1.21810 1.01723 0.95300 1.01895 1.21458 0.96416 1.01325 0.92697 0.86982 1.21803 1.02776 0.99806 0.95472 1.21004 0.79454 0.81447 0.86069 1.90614 1.63363 1.35744 1.55427 1.48653 1.12596 1.48853 1.25308 1.22204 0.89154 0.95100 0.95465 1.23390 0.97116 1.04374 0.94769 1.22677 0.90837 0.95911 0.93300 0.88066 1.59815 1.12376 1.26835 1.31674 1.21541 0.93613 0.93315 0.97800 1.20927 0.85844 0.87256 0.83605 1.90504 1.75383 1.17233 1.68072 1.41917 1.26075 1.10579 1.42369 1.19652 1.06236 0.94729 1.25780 0.90433 1.26011 1.01283 0.95823 0.98066 1.69664 1.40253 1.05196 1.40848 0.84945 0.77743 0.77947 0.77809 1.19506 1.19571 1.20016 1.21943 0.93408 0.97347 0.87848 0.93340 0.93197 0.91805 0.91952 0.91710 0.88532 0.91701 0.94006 0.91243 0.93376 0.92553 0.93320 0.91269 0.89160 0.89536 0.88923 0.87774 0.90300 0.83032 0.90524 0.87891 0.76868 0.91291 0.92349 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.71 71.98 0.70 -1.50 16 2 C -0.14 -2.43 4.71 30.59 0.14 -2.28 16 3 C -0.06 -0.90 1.67 -10.79 -0.02 -0.92 16 4 C -0.13 -2.18 5.04 30.60 0.15 -2.02 16 5 C -0.15 -1.94 9.76 71.98 0.70 -1.24 16 6 C -0.10 -1.34 1.75 -11.54 -0.02 -1.36 16 7 H 0.11 1.06 5.87 -2.39 -0.01 1.05 16 8 C -0.14 -1.52 8.44 71.98 0.61 -0.92 16 9 C 0.53 11.54 5.98 87.66 0.52 12.07 16 10 O -0.57 -17.24 12.50 -3.04 -0.04 -17.28 16 11 N -0.62 -12.26 3.33 -811.75 -2.70 -14.96 16 12 C 0.10 1.26 6.33 86.73 0.55 1.81 16 13 C -0.16 -2.27 6.55 31.79 0.21 -2.07 16 14 C 0.08 1.79 3.38 46.31 0.16 1.94 16 15 H 0.10 2.01 7.83 -2.38 -0.02 2.00 16 16 N -0.68 -20.03 6.04 -488.40 -2.95 -22.98 16 17 C 0.07 2.21 6.03 85.56 0.52 2.73 16 18 C 0.44 20.27 7.82 87.66 0.69 20.95 16 19 O -0.63 -34.43 15.78 -3.09 -0.05 -34.47 16 20 N -0.57 -28.83 5.29 -306.98 -1.62 -30.45 16 21 C -0.33 -18.87 9.68 84.04 0.81 -18.06 16 22 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 23 C -0.01 -0.63 5.50 84.92 0.47 -0.17 16 24 N -0.92 -48.94 13.05 21.66 0.28 -48.65 16 25 Si 0.99 42.73 29.55 68.60 2.03 44.76 16 26 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 27 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 28 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 29 C 0.12 2.92 6.58 86.85 0.57 3.49 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.05 0.77 6.54 -2.38 -0.02 0.75 16 32 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 33 H 0.06 1.03 6.12 -2.39 -0.01 1.01 16 34 H 0.06 1.64 5.49 -2.39 -0.01 1.63 16 35 H 0.10 0.98 8.13 -2.39 -0.02 0.96 16 36 H 0.06 1.07 6.42 -2.39 -0.02 1.05 16 37 H 0.04 0.99 5.95 -2.39 -0.01 0.98 16 38 H 0.07 0.67 8.14 -2.39 -0.02 0.66 16 39 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.06 0.67 6.55 -2.39 -0.02 0.65 16 41 H 0.05 0.71 6.68 -2.39 -0.02 0.69 16 42 H 0.07 0.61 7.17 -2.39 -0.02 0.59 16 43 H 0.09 0.61 8.13 -2.38 -0.02 0.59 16 44 H 0.09 0.80 7.17 -2.39 -0.02 0.79 16 45 H 0.09 0.74 7.68 -2.39 -0.02 0.72 16 46 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.08 1.22 7.75 -2.39 -0.02 1.20 16 48 H 0.35 10.80 7.89 -89.69 -0.71 10.10 16 49 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 50 H 0.10 3.00 8.09 -2.39 -0.02 2.98 16 51 H 0.40 18.83 7.90 -92.71 -0.73 18.10 16 52 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 53 H 0.06 1.68 8.09 -2.39 -0.02 1.66 16 54 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 Total: -1.00 -72.30 413.69 1.18 -71.12 By element: Atomic # 1 Polarization: 40.99 SS G_CDS: -0.53 Total: 40.45 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 6.76 Total: 12.46 kcal Atomic # 7 Polarization: -110.06 SS G_CDS: -6.99 Total: -117.04 kcal Atomic # 8 Polarization: -51.66 SS G_CDS: -0.09 Total: -51.75 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -72.30 1.18 -71.12 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480112708.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.908 kcal (2) G-P(sol) polarization free energy of solvation -72.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds