Wall clock time and date at job start Sat Apr 11 2020 05:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21284 * 119.99533 * 2 1 4 4 N 1.34777 * 120.00023 * 179.97438 * 2 1 3 5 5 C 1.46493 * 119.99923 * 179.97438 * 4 2 1 6 6 H 1.08997 * 109.47293 * 179.97438 * 5 4 2 7 7 C 1.52994 * 109.47198 * 300.00196 * 5 4 2 8 8 C 1.53003 * 109.47187 * 294.99553 * 7 5 4 9 9 C 1.52994 * 109.47187 * 180.02562 * 8 7 5 10 10 C 1.53010 * 109.47097 * 175.00557 * 9 8 7 11 11 C 1.53003 * 109.47213 * 295.00157 * 9 8 7 12 12 C 1.50701 * 109.47181 * 59.99912 * 5 4 2 13 13 O 1.21280 * 120.00052 * 340.27659 * 12 5 4 14 14 N 1.34777 * 120.00040 * 159.99908 * 12 5 4 15 15 C 1.46506 * 120.00096 * 180.02562 * 14 12 5 16 16 H 1.09004 * 109.49399 * 324.93583 * 15 14 12 17 17 C 1.53032 * 109.49836 * 204.83638 * 15 14 12 18 18 C 1.53039 * 109.53904 * 178.68125 * 17 15 14 19 19 C 1.53195 * 109.31203 * 61.36544 * 18 17 15 20 20 N 1.46921 * 108.77686 * 305.36777 * 19 18 17 21 21 C 1.36935 * 120.62950 * 233.58587 * 20 19 18 22 22 H 1.07997 * 120.00205 * 27.69893 * 21 20 19 23 23 C 1.38816 * 120.00029 * 207.69314 * 21 20 19 24 24 N 1.31617 * 119.99419 * 17.35862 * 23 21 20 25 25 Si 1.86798 * 119.99955 * 197.35583 * 23 21 20 26 26 H 1.48501 * 109.46865 * 90.00286 * 25 23 21 27 27 H 1.48497 * 109.47249 * 210.00058 * 25 23 21 28 28 H 1.48493 * 109.47335 * 330.00308 * 25 23 21 29 29 C 1.46927 * 118.73832 * 53.60573 * 20 19 18 30 30 H 1.08997 * 109.47161 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47209 * 300.00092 * 1 2 3 32 32 H 1.09005 * 109.46918 * 60.00266 * 1 2 3 33 33 H 0.97000 * 119.99731 * 0.02562 * 4 2 1 34 34 H 1.08999 * 109.47526 * 54.99941 * 7 5 4 35 35 H 1.09010 * 109.47457 * 175.00139 * 7 5 4 36 36 H 1.08999 * 109.47204 * 300.00585 * 8 7 5 37 37 H 1.09007 * 109.46581 * 60.00469 * 8 7 5 38 38 H 1.08999 * 109.47322 * 55.00738 * 9 8 7 39 39 H 1.08999 * 109.46887 * 59.99914 * 10 9 8 40 40 H 1.08995 * 109.46998 * 180.02562 * 10 9 8 41 41 H 1.09004 * 109.46389 * 299.99983 * 10 9 8 42 42 H 1.09007 * 109.46862 * 180.02562 * 11 9 8 43 43 H 1.08994 * 109.47397 * 299.99763 * 11 9 8 44 44 H 1.08998 * 109.46976 * 60.00889 * 11 9 8 45 45 H 0.96996 * 120.00322 * 359.97438 * 14 12 5 46 46 H 1.08997 * 109.46405 * 298.70295 * 17 15 14 47 47 H 1.09007 * 109.46099 * 58.66239 * 17 15 14 48 48 H 1.09003 * 109.49740 * 301.41461 * 18 17 15 49 49 H 1.08998 * 109.52557 * 181.33369 * 18 17 15 50 50 H 1.09003 * 109.58710 * 185.57383 * 19 18 17 51 51 H 1.09004 * 109.70189 * 65.22114 * 19 18 17 52 52 H 0.97006 * 119.99207 * 179.97438 * 24 23 21 53 53 H 1.08998 * 109.58553 * 186.60570 * 29 20 19 54 54 H 1.08994 * 109.70442 * 66.25305 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0000 6 1 4.0092 -2.1948 0.0010 7 6 4.1554 -0.4467 -1.2499 8 6 3.7503 -1.2378 -2.4953 9 6 4.2603 -0.5177 -3.7451 10 6 3.9646 -1.3698 -4.9811 11 6 3.5565 0.8344 -3.8777 12 6 4.1487 -0.4559 1.2297 13 8 3.4189 0.3021 1.8328 14 7 5.4076 -0.6665 1.6626 15 6 5.8962 0.0246 2.8585 16 1 5.4626 1.0236 2.9040 17 6 7.4217 0.1313 2.7992 18 6 7.9305 0.8820 4.0320 19 6 7.5490 0.1013 5.2937 20 7 6.0985 -0.1317 5.2852 21 6 5.3267 0.2347 6.3554 22 1 5.6343 1.0546 6.9875 23 6 4.1488 -0.4475 6.6277 24 7 3.9370 -1.6328 6.0961 25 14 2.8646 0.3166 7.7485 26 1 1.9178 1.1241 6.9380 27 1 2.1208 -0.7578 8.4538 28 1 3.5341 1.1911 8.7445 29 6 5.4917 -0.7659 4.1069 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 1.6959 -2.0072 0.0005 34 1 3.7208 0.5518 -1.2963 35 1 5.2418 -0.3685 -1.2068 36 1 4.1849 -2.2363 -2.4489 37 1 2.6639 -1.3160 -2.5385 38 1 5.3356 -0.3609 -3.6607 39 1 2.8893 -1.5266 -5.0655 40 1 4.3284 -0.8570 -5.8714 41 1 4.4660 -2.3331 -4.8866 42 1 3.9196 1.3472 -4.7684 43 1 2.4812 0.6776 -3.9622 44 1 3.7672 1.4415 -2.9973 45 1 5.9899 -1.2761 1.1829 46 1 7.8552 -0.8685 2.7784 47 1 7.7132 0.6721 1.8988 48 1 7.4782 1.8731 4.0668 49 1 9.0148 0.9786 3.9779 50 1 7.8212 0.6790 6.1771 51 1 8.0726 -0.8547 5.3067 52 1 3.1141 -2.1097 6.2867 53 1 4.4064 -0.7603 4.2071 54 1 5.8453 -1.7931 4.0194 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481530990.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:53 Heat of formation + Delta-G solvation = -99.341812 kcal Electronic energy + Delta-G solvation = -31727.315996 eV Core-core repulsion = 27697.764615 eV Total energy + Delta-G solvation = -4029.551381 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.58584 -40.04504 -38.73719 -37.84952 -35.77448 -35.61038 -34.43038 -32.73853 -31.90459 -30.51659 -30.17016 -28.00656 -27.37832 -27.19294 -24.09113 -23.83126 -23.18563 -22.00474 -21.20528 -20.71862 -20.45564 -18.77164 -18.49231 -18.02292 -17.10723 -16.95168 -16.35099 -16.20032 -15.92881 -15.79941 -15.65117 -15.29964 -15.03934 -14.83600 -14.69990 -14.45354 -14.27185 -14.14807 -13.97037 -13.85030 -13.50290 -13.29004 -13.08408 -12.96922 -12.89233 -12.77057 -12.72801 -12.57244 -12.45783 -12.25360 -12.13088 -12.06406 -11.73091 -11.65419 -11.55955 -11.48924 -11.39687 -11.27927 -11.00425 -10.58927 -10.51202 -10.05262 -9.79267 -8.71335 -7.92040 -5.37130 1.36278 1.42730 1.47720 1.67672 1.88200 2.23775 2.44109 2.52684 3.23851 3.64022 3.78706 3.89148 3.90466 3.97855 4.08908 4.10570 4.13362 4.19410 4.26531 4.34605 4.47183 4.49295 4.51332 4.61684 4.64526 4.69192 4.80311 4.82061 4.88179 4.90703 4.93837 5.03621 5.04487 5.06268 5.11417 5.17965 5.18812 5.22496 5.27680 5.32792 5.40944 5.48021 5.49753 5.53377 5.56904 5.58787 5.61228 5.79208 6.34195 6.69143 6.73167 7.09607 7.43072 7.55384 7.82965 8.31451 9.12421 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012704 B = 0.003363 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.494427 B = 8324.661264 C = 9850.957954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.503 3.497 3 O -0.568 6.568 4 N -0.710 5.710 5 C 0.141 3.859 6 H 0.146 0.854 7 C -0.125 4.125 8 C -0.099 4.099 9 C -0.096 4.096 10 C -0.142 4.142 11 C -0.148 4.148 12 C 0.486 3.514 13 O -0.566 6.566 14 N -0.710 5.710 15 C 0.134 3.866 16 H 0.036 0.964 17 C -0.105 4.105 18 C -0.123 4.123 19 C 0.136 3.864 20 N -0.611 5.611 21 C -0.266 4.266 22 H 0.065 0.935 23 C -0.049 4.049 24 N -0.927 5.927 25 Si 0.960 3.040 26 H -0.299 1.299 27 H -0.286 1.286 28 H -0.262 1.262 29 C 0.184 3.816 30 H 0.106 0.894 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.420 0.580 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.048 0.952 44 H 0.035 0.965 45 H 0.413 0.587 46 H 0.079 0.921 47 H 0.082 0.918 48 H 0.045 0.955 49 H 0.098 0.902 50 H 0.053 0.947 51 H 0.026 0.974 52 H 0.247 0.753 53 H 0.040 0.960 54 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.298 -4.763 -23.516 24.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.292 3.708 3 O -0.446 6.446 4 N -0.364 5.364 5 C 0.031 3.969 6 H 0.163 0.837 7 C -0.164 4.164 8 C -0.137 4.137 9 C -0.114 4.114 10 C -0.199 4.199 11 C -0.205 4.205 12 C 0.271 3.729 13 O -0.442 6.442 14 N -0.364 5.364 15 C 0.027 3.973 16 H 0.054 0.946 17 C -0.143 4.143 18 C -0.162 4.162 19 C 0.011 3.989 20 N -0.335 5.335 21 C -0.396 4.396 22 H 0.083 0.917 23 C -0.245 4.245 24 N -0.572 5.572 25 Si 0.788 3.212 26 H -0.226 1.226 27 H -0.212 1.212 28 H -0.187 1.187 29 C 0.057 3.943 30 H 0.125 0.875 31 H 0.096 0.904 32 H 0.124 0.876 33 H 0.257 0.743 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.055 0.945 45 H 0.249 0.751 46 H 0.098 0.902 47 H 0.100 0.900 48 H 0.064 0.936 49 H 0.117 0.883 50 H 0.072 0.928 51 H 0.043 0.957 52 H 0.056 0.944 53 H 0.058 0.942 54 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges 1.071 -3.565 -23.028 23.327 hybrid contribution -1.005 -0.050 1.056 1.459 sum 0.066 -3.616 -21.972 22.268 Atomic orbital electron populations 1.21833 0.89415 1.06053 1.04964 1.21343 0.91803 0.83427 0.74270 1.90688 1.71477 1.33163 1.49294 1.45668 1.05426 1.09360 1.75949 1.21002 0.82264 1.01986 0.91612 0.83696 1.21929 1.01448 1.00497 0.92537 1.21555 1.01305 0.99038 0.91773 1.21108 1.00155 0.94873 0.95277 1.21796 1.01720 0.99774 0.96652 1.21865 1.00368 0.97406 1.00851 1.21816 0.81980 0.82308 0.86788 1.90767 1.56767 1.37877 1.58830 1.45854 1.14107 1.47702 1.28713 1.21392 0.95622 0.95110 0.85158 0.94599 1.21626 0.91823 1.01930 0.98942 1.21909 1.01417 0.98370 0.94504 1.21173 0.83532 0.97113 0.97072 1.44265 1.02874 1.71552 1.14836 1.19486 1.03894 1.10205 1.06022 0.91716 1.25750 1.02128 0.95597 1.01033 1.70164 1.25714 1.12415 1.48934 0.85376 0.79495 0.77688 0.78628 1.22646 1.21245 1.18678 1.20733 0.97441 0.91847 0.84257 0.87501 0.90352 0.87638 0.74270 0.92073 0.90064 0.89599 0.91979 0.91070 0.92756 0.92603 0.91681 0.92376 0.93242 0.94543 0.75070 0.90230 0.89983 0.93648 0.88319 0.92823 0.95650 0.94379 0.94188 0.97921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.31 10.39 71.24 0.74 -2.57 16 2 C 0.50 14.93 6.69 87.66 0.59 15.52 16 3 O -0.57 -23.16 12.96 19.40 0.25 -22.91 16 4 N -0.71 -16.33 4.65 -446.11 -2.07 -18.40 16 5 C 0.14 3.33 3.01 44.24 0.13 3.46 16 6 H 0.15 2.20 8.14 -2.39 -0.02 2.18 16 7 C -0.13 -2.65 4.30 30.59 0.13 -2.52 16 8 C -0.10 -1.42 4.57 30.59 0.14 -1.28 16 9 C -0.10 -1.37 2.92 -10.79 -0.03 -1.40 16 10 C -0.14 -1.57 9.19 71.99 0.66 -0.90 16 11 C -0.15 -2.65 8.95 71.98 0.64 -2.00 16 12 C 0.49 17.78 6.78 87.66 0.59 18.38 16 13 O -0.57 -28.37 13.35 19.41 0.26 -28.11 16 14 N -0.71 -23.30 5.08 -442.16 -2.25 -25.54 16 15 C 0.13 5.49 2.60 45.07 0.12 5.61 16 16 H 0.04 1.79 7.58 -2.39 -0.02 1.78 16 17 C -0.11 -3.24 5.35 30.62 0.16 -3.08 16 18 C -0.12 -4.03 6.08 30.67 0.19 -3.85 16 19 C 0.14 5.69 6.52 86.36 0.56 6.26 16 20 N -0.61 -32.64 2.99 -699.10 -2.09 -34.74 16 21 C -0.27 -15.76 9.59 84.03 0.81 -14.96 16 22 H 0.07 3.75 7.89 -2.91 -0.02 3.72 16 23 C -0.05 -2.97 4.91 84.86 0.42 -2.56 16 24 N -0.93 -58.12 11.19 21.65 0.24 -57.88 16 25 Si 0.96 48.91 29.59 68.60 2.03 50.94 16 26 H -0.30 -15.72 7.11 99.48 0.71 -15.01 16 27 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 28 H -0.26 -12.53 7.11 99.48 0.71 -11.83 16 29 C 0.18 9.50 4.88 86.36 0.42 9.92 16 30 H 0.11 1.35 7.91 -2.39 -0.02 1.33 16 31 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 32 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 33 H 0.42 6.25 8.67 -92.71 -0.80 5.44 16 34 H 0.06 1.81 4.47 -2.39 -0.01 1.80 16 35 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 36 H 0.09 0.85 8.14 -2.39 -0.02 0.84 16 37 H 0.06 0.93 7.75 -2.38 -0.02 0.91 16 38 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 42 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 43 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.04 0.83 6.57 -2.39 -0.02 0.81 16 45 H 0.41 9.48 8.60 -92.71 -0.80 8.69 16 46 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 47 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 48 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 49 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 50 H 0.05 2.21 7.93 -2.39 -0.02 2.19 16 51 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 52 H 0.25 15.05 8.31 -92.70 -0.77 14.28 16 53 H 0.04 2.49 6.04 -2.39 -0.01 2.47 16 54 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 Total: -1.00 -89.48 418.01 1.92 -87.56 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: -0.72 Total: 25.05 kcal Atomic # 6 Polarization: 17.75 SS G_CDS: 6.27 Total: 24.03 kcal Atomic # 7 Polarization: -130.39 SS G_CDS: -6.17 Total: -136.56 kcal Atomic # 8 Polarization: -51.53 SS G_CDS: 0.51 Total: -51.02 kcal Atomic # 14 Polarization: 48.91 SS G_CDS: 2.03 Total: 50.94 kcal Total: -89.48 1.92 -87.56 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481530990.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.783 kcal (2) G-P(sol) polarization free energy of solvation -89.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds