Wall clock time and date at job start Sat Apr 11 2020 05:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47620 * 2 1 4 4 C 1.53005 * 109.47330 * 120.00311 * 2 1 3 5 5 C 1.52992 * 109.47310 * 171.71399 * 4 2 1 6 6 C 1.53002 * 109.47073 * 316.98727 * 5 4 2 7 7 C 1.52999 * 109.47376 * 196.98866 * 5 4 2 8 8 C 1.50699 * 109.47468 * 76.98598 * 5 4 2 9 9 O 1.21286 * 119.99655 * 5.46445 * 8 5 4 10 10 N 1.34768 * 120.00489 * 185.46470 * 8 5 4 11 11 C 1.47025 * 125.64615 * 355.15577 * 10 8 5 12 12 C 1.54329 * 107.40085 * 178.90062 * 11 10 8 13 13 C 1.55401 * 102.82850 * 337.97656 * 12 11 10 14 14 H 1.09002 * 110.92523 * 277.25297 * 13 12 11 15 15 N 1.46895 * 111.03767 * 153.47142 * 13 12 11 16 16 C 1.46909 * 110.99920 * 92.68248 * 15 13 12 17 17 C 1.50698 * 109.47267 * 179.97438 * 16 15 13 18 18 O 1.21296 * 120.00049 * 0.02562 * 17 16 15 19 19 N 1.34776 * 120.00217 * 180.02562 * 17 16 15 20 20 C 1.37097 * 120.00104 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99947 * 359.97438 * 20 19 17 22 22 C 1.38952 * 119.99999 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99637 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99969 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47294 * 60.00020 * 24 22 20 26 26 H 1.48499 * 109.46749 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47083 * 299.99700 * 24 22 20 28 28 C 1.47426 * 125.65169 * 175.20049 * 10 8 5 29 29 H 1.09004 * 109.46529 * 300.00043 * 1 2 3 30 30 H 1.08997 * 109.47339 * 59.99627 * 1 2 3 31 31 H 1.09002 * 109.47360 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46667 * 239.99469 * 2 1 3 33 33 H 1.08999 * 109.46900 * 306.58859 * 3 2 1 34 34 H 1.09000 * 109.46993 * 66.58697 * 3 2 1 35 35 H 1.09002 * 109.47565 * 186.59221 * 3 2 1 36 36 H 1.09001 * 109.46908 * 51.71068 * 4 2 1 37 37 H 1.08998 * 109.47005 * 291.71621 * 4 2 1 38 38 H 1.09002 * 109.47224 * 195.12071 * 6 5 4 39 39 H 1.09003 * 109.46852 * 315.11614 * 6 5 4 40 40 H 1.08998 * 109.47370 * 75.12285 * 6 5 4 41 41 H 1.09005 * 109.46702 * 291.78693 * 7 5 4 42 42 H 1.08999 * 109.47408 * 51.78467 * 7 5 4 43 43 H 1.08998 * 109.47596 * 171.78786 * 7 5 4 44 44 H 1.09002 * 109.87988 * 298.39089 * 11 10 8 45 45 H 1.08996 * 109.88792 * 59.40580 * 11 10 8 46 46 H 1.09001 * 110.72014 * 96.24638 * 12 11 10 47 47 H 1.08996 * 110.72114 * 219.51913 * 12 11 10 48 48 H 1.00895 * 111.00305 * 328.73042 * 15 13 12 49 49 H 1.09001 * 109.46782 * 300.00034 * 16 15 13 50 50 H 1.08999 * 109.47229 * 59.99912 * 16 15 13 51 51 H 0.96996 * 119.99520 * 359.97438 * 19 17 16 52 52 H 0.97000 * 119.99429 * 179.97438 * 23 22 20 53 53 H 1.08998 * 110.36255 * 322.92632 * 28 10 8 54 54 H 1.08998 * 110.37056 * 85.24933 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5558 -0.9039 1.1496 6 6 3.9239 -1.3487 -0.2673 7 6 4.0084 -1.9676 2.1518 8 6 4.2406 0.4022 1.4599 9 8 3.5887 1.3557 1.8299 10 7 5.5772 0.5108 1.3262 11 6 6.4961 -0.5853 0.9859 12 6 7.9184 0.0096 0.9163 13 6 7.6490 1.5199 0.6690 14 1 7.4730 1.7159 -0.3887 15 7 8.7544 2.3429 1.1774 16 6 9.7447 2.6032 0.1238 17 6 10.8607 3.4488 0.6812 18 8 10.8341 3.7997 1.8420 19 7 11.8883 3.8151 -0.1102 20 6 12.9038 4.5839 0.3970 21 1 12.8801 4.8963 1.4306 22 6 13.9636 4.9611 -0.4187 23 7 13.9926 4.5805 -1.6761 24 14 15.3469 6.0092 0.2722 25 1 15.9980 5.2907 1.3970 26 1 16.3481 6.2718 -0.7926 27 1 14.7945 7.2979 0.7615 28 6 6.3603 1.7480 1.4979 29 1 -0.3632 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8932 -0.5139 -0.8900 33 1 1.5837 1.9891 -0.8252 34 1 1.7762 1.9210 0.9431 35 1 3.1237 1.4446 -0.1180 36 1 1.5608 -1.6973 1.3263 37 1 1.8027 -0.1292 2.1330 38 1 4.9434 -1.7343 -0.2737 39 1 3.2376 -2.1307 -0.5924 40 1 3.8529 -0.4981 -0.9451 41 1 3.8798 -1.5893 3.1660 42 1 3.4087 -2.8684 2.0213 43 1 5.0591 -2.2030 1.9823 44 1 6.4541 -1.3565 1.7551 45 1 6.2245 -1.0104 0.0197 46 1 8.4449 -0.1385 1.8592 47 1 8.4783 -0.4253 0.0884 48 1 9.1863 1.9120 1.9810 49 1 10.1498 1.6573 -0.2357 50 1 9.2669 3.1310 -0.7015 51 1 11.9097 3.5342 -1.0383 52 1 14.7322 4.8442 -2.2456 53 1 5.8070 2.6038 1.1111 54 1 6.6068 1.8982 2.5489 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491761871.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:45 Heat of formation + Delta-G solvation = -92.261542 kcal Electronic energy + Delta-G solvation = -30509.671287 eV Core-core repulsion = 26480.426929 eV Total energy + Delta-G solvation = -4029.244357 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.86857 -40.24201 -39.25632 -37.50398 -36.29123 -35.72261 -34.59568 -33.26294 -31.51250 -30.01146 -28.57192 -27.91951 -27.74476 -27.35252 -25.88817 -24.74700 -22.63227 -21.89956 -21.13810 -20.93074 -19.92318 -19.62783 -17.90544 -17.56460 -17.43979 -16.92733 -16.74313 -16.36568 -16.29229 -15.82231 -15.54974 -15.37650 -14.87547 -14.77633 -14.51092 -14.28847 -14.10075 -14.01556 -13.90857 -13.60896 -13.53212 -13.45582 -13.32565 -13.09989 -12.95843 -12.95098 -12.79399 -12.60809 -12.50032 -12.43346 -12.37065 -12.25153 -12.12184 -11.73785 -11.61419 -11.58480 -11.50207 -11.29772 -11.07316 -10.54209 -10.35306 -10.01415 -9.56047 -9.30286 -8.46534 -5.95070 1.39864 1.42097 1.52662 1.67972 1.93826 2.05660 2.29860 2.92220 3.20846 3.34866 3.47168 3.64483 3.69656 3.82573 3.90060 4.01535 4.14292 4.14802 4.21093 4.27275 4.29478 4.37393 4.45501 4.50589 4.55059 4.60963 4.71708 4.74803 4.79433 4.81018 4.82859 4.88858 4.93258 4.93900 4.99242 5.03976 5.06958 5.10201 5.16925 5.22882 5.23436 5.32266 5.38626 5.40645 5.41223 5.47857 5.65849 5.88535 6.09033 6.36063 6.58057 6.60547 7.12912 7.22006 7.56616 8.12187 8.70446 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.027450 B = 0.001837 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.802945 B =15239.436220 C =15470.862123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 C -0.132 4.132 4 C -0.092 4.092 5 C -0.073 4.073 6 C -0.149 4.149 7 C -0.145 4.145 8 C 0.527 3.473 9 O -0.570 6.570 10 N -0.616 5.616 11 C 0.091 3.909 12 C -0.158 4.158 13 C 0.084 3.916 14 H 0.101 0.899 15 N -0.675 5.675 16 C 0.070 3.930 17 C 0.436 3.564 18 O -0.625 6.625 19 N -0.572 5.572 20 C -0.335 4.335 21 H 0.078 0.922 22 C -0.012 4.012 23 N -0.919 5.919 24 Si 0.992 3.008 25 H -0.271 1.271 26 H -0.270 1.270 27 H -0.274 1.274 28 C 0.119 3.881 29 H 0.043 0.957 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.037 0.963 34 H 0.042 0.958 35 H 0.038 0.962 36 H 0.091 0.909 37 H 0.049 0.951 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.050 0.950 41 H 0.043 0.957 42 H 0.090 0.910 43 H 0.078 0.922 44 H 0.089 0.911 45 H 0.102 0.898 46 H 0.078 0.922 47 H 0.105 0.895 48 H 0.349 0.651 49 H 0.077 0.923 50 H 0.103 0.897 51 H 0.397 0.603 52 H 0.278 0.722 53 H 0.057 0.943 54 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.994 -20.292 -1.700 29.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 C -0.189 4.189 4 C -0.130 4.130 5 C -0.076 4.076 6 C -0.206 4.206 7 C -0.202 4.202 8 C 0.318 3.682 9 O -0.449 6.449 10 N -0.350 5.350 11 C -0.031 4.031 12 C -0.198 4.198 13 C -0.027 4.027 14 H 0.119 0.881 15 N -0.307 5.307 16 C -0.063 4.063 17 C 0.223 3.777 18 O -0.512 6.512 19 N -0.209 5.209 20 C -0.465 4.465 21 H 0.096 0.904 22 C -0.212 4.212 23 N -0.559 5.559 24 Si 0.815 3.185 25 H -0.196 1.196 26 H -0.194 1.194 27 H -0.200 1.200 28 C -0.005 4.005 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.109 0.891 37 H 0.068 0.932 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.108 0.892 43 H 0.097 0.903 44 H 0.107 0.893 45 H 0.119 0.881 46 H 0.097 0.903 47 H 0.123 0.877 48 H 0.170 0.830 49 H 0.095 0.905 50 H 0.121 0.879 51 H 0.231 0.769 52 H 0.087 0.913 53 H 0.076 0.924 54 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -22.615 -18.922 -0.979 29.503 hybrid contribution 1.289 0.350 0.053 1.337 sum -21.326 -18.572 -0.926 28.294 Atomic orbital electron populations 1.21809 0.94636 1.02263 1.01371 1.21244 0.96157 0.95494 0.98677 1.22014 0.99890 0.96987 1.00021 1.21600 0.92068 1.01196 0.98108 1.20793 0.96151 0.91539 0.99086 1.22188 1.03710 1.02019 0.92687 1.22031 1.03250 0.97847 0.97086 1.20895 0.80110 0.90849 0.76384 1.90730 1.64196 1.42100 1.47857 1.48485 1.05909 1.11001 1.69615 1.22645 0.87877 0.89648 1.02933 1.23458 0.96739 0.95451 1.04110 1.22723 0.89878 0.91080 0.99040 0.88090 1.59812 1.11403 1.51309 1.08181 1.21538 0.91097 0.98899 0.94724 1.20924 0.84806 0.85230 0.86694 1.90503 1.80044 1.61006 1.19654 1.41911 1.19463 1.46632 1.12904 1.19619 1.00407 1.28983 0.97461 0.90425 1.26016 1.00694 0.98954 0.95527 1.69659 1.33846 1.46377 1.06053 0.85008 0.77288 0.78255 0.77905 1.19639 1.19433 1.19962 1.21937 0.91475 0.87336 0.99747 0.93777 0.92672 0.91228 0.89674 0.94412 0.93885 0.94264 0.89052 0.93227 0.89780 0.89361 0.93043 0.93732 0.89152 0.90283 0.89288 0.88069 0.90329 0.87701 0.83045 0.90508 0.87910 0.76867 0.91278 0.92404 0.92586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.18 71.98 0.66 -1.27 16 2 C -0.10 -1.53 2.43 -10.80 -0.03 -1.56 16 3 C -0.13 -2.96 7.34 71.98 0.53 -2.43 16 4 C -0.09 -1.39 3.93 30.59 0.12 -1.27 16 5 C -0.07 -1.03 0.51 -52.93 -0.03 -1.06 16 6 C -0.15 -1.43 6.53 71.98 0.47 -0.96 16 7 C -0.15 -1.50 8.20 71.98 0.59 -0.91 16 8 C 0.53 11.80 4.83 87.66 0.42 12.22 16 9 O -0.57 -17.51 12.02 -3.05 -0.04 -17.54 16 10 N -0.62 -12.38 3.30 -811.79 -2.68 -15.06 16 11 C 0.09 1.13 5.27 86.73 0.46 1.59 16 12 C -0.16 -2.31 6.57 31.87 0.21 -2.10 16 13 C 0.08 1.80 3.38 46.40 0.16 1.96 16 14 H 0.10 2.02 7.83 -2.39 -0.02 2.00 16 15 N -0.68 -20.12 6.04 -487.95 -2.95 -23.06 16 16 C 0.07 2.22 6.03 85.55 0.52 2.74 16 17 C 0.44 20.28 7.82 87.66 0.69 20.97 16 18 O -0.63 -34.47 15.78 -3.08 -0.05 -34.52 16 19 N -0.57 -28.83 5.29 -306.98 -1.62 -30.46 16 20 C -0.34 -18.92 9.68 84.04 0.81 -18.11 16 21 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 22 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 23 N -0.92 -48.96 13.05 21.66 0.28 -48.67 16 24 Si 0.99 42.74 29.55 68.60 2.03 44.77 16 25 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 26 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 27 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 28 C 0.12 2.96 6.59 86.86 0.57 3.54 16 29 H 0.04 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.09 1.10 5.96 -2.39 -0.01 1.09 16 33 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.04 1.18 6.90 -2.39 -0.02 1.16 16 35 H 0.04 0.98 4.88 -2.39 -0.01 0.97 16 36 H 0.09 0.93 7.90 -2.39 -0.02 0.91 16 37 H 0.05 1.03 7.34 -2.39 -0.02 1.01 16 38 H 0.08 0.55 4.80 -2.39 -0.01 0.54 16 39 H 0.09 0.54 7.81 -2.39 -0.02 0.52 16 40 H 0.05 0.65 6.47 -2.39 -0.02 0.63 16 41 H 0.04 0.61 8.13 -2.38 -0.02 0.59 16 42 H 0.09 0.57 7.98 -2.39 -0.02 0.55 16 43 H 0.08 0.62 4.98 -2.39 -0.01 0.61 16 44 H 0.09 0.86 5.88 -2.39 -0.01 0.85 16 45 H 0.10 0.85 5.19 -2.39 -0.01 0.84 16 46 H 0.08 1.23 7.76 -2.39 -0.02 1.21 16 47 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.35 10.85 7.90 -89.70 -0.71 10.14 16 49 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 50 H 0.10 3.00 8.09 -2.39 -0.02 2.98 16 51 H 0.40 18.84 7.90 -92.71 -0.73 18.11 16 52 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 53 H 0.06 1.69 8.09 -2.39 -0.02 1.67 16 54 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -72.92 404.38 1.07 -71.85 By element: Atomic # 1 Polarization: 40.06 SS G_CDS: -0.52 Total: 39.54 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: 6.62 Total: 13.16 kcal Atomic # 7 Polarization: -110.29 SS G_CDS: -6.97 Total: -117.25 kcal Atomic # 8 Polarization: -51.97 SS G_CDS: -0.09 Total: -52.06 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -72.92 1.07 -71.85 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491761871.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.414 kcal (2) G-P(sol) polarization free energy of solvation -72.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds