Wall clock time and date at job start Sat Apr 11 2020 05:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 C 1.53009 * 109.46984 * 174.99905 * 4 2 1 6 6 C 1.52989 * 109.47113 * 179.97438 * 5 4 2 7 7 C 1.53009 * 109.47113 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.47239 * 180.02562 * 7 6 5 9 9 O 1.21281 * 119.99776 * 0.02562 * 8 7 6 10 10 N 1.34770 * 120.00047 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00179 * 179.97438 * 10 8 7 12 12 H 1.09004 * 110.27381 * 325.70203 * 11 10 8 13 13 C 1.54589 * 110.31006 * 87.79322 * 11 10 8 14 14 C 1.55198 * 102.80428 * 96.97846 * 13 11 10 15 15 N 1.48537 * 103.23404 * 37.43705 * 14 13 11 16 16 C 1.46897 * 111.00034 * 200.25628 * 15 14 13 17 17 C 1.50698 * 109.47043 * 287.39572 * 16 15 14 18 18 O 1.21289 * 120.00231 * 359.97438 * 17 16 15 19 19 N 1.34783 * 120.00084 * 180.02562 * 17 16 15 20 20 C 1.37092 * 120.00181 * 180.02562 * 19 17 16 21 21 H 1.08009 * 119.99837 * 359.97438 * 20 19 17 22 22 C 1.38952 * 120.00198 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99768 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00024 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47120 * 60.00052 * 24 22 20 26 26 H 1.48496 * 109.46844 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47132 * 299.99959 * 24 22 20 28 28 C 1.47900 * 105.82158 * 320.76988 * 15 14 13 29 29 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 32 32 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 33 33 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 34 34 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 35 35 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 36 36 H 1.08997 * 109.47756 * 294.99575 * 4 2 1 37 37 H 1.09001 * 109.47317 * 55.00458 * 4 2 1 38 38 H 1.08999 * 109.47112 * 300.00392 * 5 4 2 39 39 H 1.09001 * 109.46642 * 60.00139 * 5 4 2 40 40 H 1.08999 * 109.47464 * 300.00192 * 6 5 4 41 41 H 1.09001 * 109.47240 * 60.00521 * 6 5 4 42 42 H 1.08997 * 109.46604 * 300.00391 * 7 6 5 43 43 H 1.08993 * 109.46833 * 59.99859 * 7 6 5 44 44 H 0.97002 * 120.00224 * 0.02562 * 10 8 7 45 45 H 1.08999 * 110.72909 * 215.31484 * 13 11 10 46 46 H 1.09001 * 110.72468 * 338.60232 * 13 11 10 47 47 H 1.08999 * 110.68612 * 278.99132 * 14 13 11 48 48 H 1.08994 * 110.78865 * 155.92779 * 14 13 11 49 49 H 1.09005 * 109.47231 * 47.39377 * 16 15 14 50 50 H 1.08997 * 109.47171 * 167.39404 * 16 15 14 51 51 H 0.97008 * 119.99777 * 359.97438 * 19 17 16 52 52 H 0.96996 * 119.99810 * 179.97438 * 23 22 20 53 53 H 1.08998 * 109.92033 * 265.97963 * 28 15 14 54 54 H 1.08991 * 110.08588 * 144.77691 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.8311 1.1881 6 6 4.0748 -1.5517 2.4376 7 6 5.5996 -1.6622 2.3761 8 6 6.1019 -2.3726 3.6065 9 8 5.3175 -2.7535 4.4494 10 7 7.4226 -2.5855 3.7698 11 6 7.9110 -3.2756 4.9662 12 1 7.2915 -3.0235 5.8270 13 6 7.9170 -4.8047 4.7388 14 6 9.3883 -5.0863 4.3332 15 7 10.1624 -4.1555 5.1939 16 6 11.5035 -3.9207 4.6423 17 6 12.3501 -5.1519 4.8386 18 8 11.8824 -6.1287 5.3847 19 7 13.6272 -5.1672 4.4082 20 6 14.3972 -6.2874 4.5862 21 1 13.9805 -7.1576 5.0718 22 6 15.7137 -6.3034 4.1420 23 7 16.2205 -5.2449 3.5508 24 14 16.7631 -7.8296 4.3853 25 1 16.1345 -8.9791 3.6861 26 1 18.1185 -7.5924 3.8272 27 1 16.8701 -8.1307 5.8355 28 6 9.3800 -2.9012 5.2371 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1301 1.4425 0.0005 36 1 1.7517 -0.1583 2.1370 37 1 1.6053 -1.7198 1.2952 38 1 3.8532 -1.3940 0.3003 39 1 3.9994 0.1675 1.1422 40 1 3.7864 -0.9885 3.3251 41 1 3.6402 -2.5503 2.4839 42 1 5.8875 -2.2257 1.4886 43 1 6.0346 -0.6639 2.3294 44 1 8.0500 -2.2812 3.0954 45 1 7.6619 -5.3324 5.6578 46 1 7.2346 -5.0776 3.9339 47 1 9.5476 -4.8581 3.2793 48 1 9.6572 -6.1208 4.5464 49 1 11.4250 -3.6997 3.5778 50 1 11.9648 -3.0770 5.1555 51 1 14.0014 -4.3858 3.9717 52 1 17.1397 -5.2560 3.2411 53 1 9.7359 -2.2148 4.4688 54 1 9.4700 -2.4376 6.2194 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494728811.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:30 Heat of formation + Delta-G solvation = -123.168928 kcal Electronic energy + Delta-G solvation = -28684.865674 eV Core-core repulsion = 24654.281072 eV Total energy + Delta-G solvation = -4030.584602 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.23862 -40.28310 -39.05491 -38.04544 -35.99468 -35.26923 -34.87439 -33.28540 -32.25050 -30.46957 -29.47580 -28.07537 -27.97652 -26.09616 -25.40486 -22.77893 -22.33914 -21.60350 -21.27620 -20.89145 -20.68333 -19.85862 -18.04707 -17.96906 -17.32371 -16.98338 -16.61671 -16.46098 -16.13714 -15.96790 -15.78468 -15.48566 -15.12164 -15.04717 -14.71287 -14.66301 -14.32345 -14.10062 -13.64203 -13.52923 -13.45170 -13.23924 -13.07463 -13.02645 -12.93684 -12.78740 -12.56723 -12.46428 -12.40645 -12.31785 -12.29278 -12.15128 -12.11437 -11.92475 -11.65066 -11.46806 -11.44435 -11.33538 -11.21715 -10.80045 -10.30616 -10.09945 -9.98635 -9.31221 -8.45033 -5.93222 1.40328 1.42260 1.52711 1.67882 2.08521 2.15648 2.30664 2.85665 3.21924 3.37892 3.52634 3.75529 3.76258 3.86369 3.99231 4.07225 4.10521 4.18183 4.24589 4.28830 4.33787 4.36102 4.45456 4.53222 4.54944 4.58777 4.68762 4.74234 4.80601 4.81654 4.85601 4.88375 4.95041 4.98048 5.01709 5.02995 5.09379 5.11570 5.17180 5.21121 5.35105 5.36880 5.42052 5.43661 5.49839 5.59306 5.59941 5.84875 5.95327 6.10103 6.57389 6.63391 7.15447 7.29608 7.59229 8.16020 8.72104 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.025120 B = 0.001441 C = 0.001405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.388259 B =19421.703987 C =19922.003367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.097 4.097 3 C -0.149 4.149 4 C -0.116 4.116 5 C -0.114 4.114 6 C -0.101 4.101 7 C -0.133 4.133 8 C 0.508 3.492 9 O -0.586 6.586 10 N -0.714 5.714 11 C 0.142 3.858 12 H 0.088 0.912 13 C -0.121 4.121 14 C 0.045 3.955 15 N -0.516 5.516 16 C 0.051 3.949 17 C 0.440 3.560 18 O -0.618 6.618 19 N -0.574 5.574 20 C -0.334 4.334 21 H 0.076 0.924 22 C -0.010 4.010 23 N -0.920 5.920 24 Si 0.990 3.010 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.274 1.274 28 C 0.036 3.964 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.053 0.947 41 H 0.049 0.951 42 H 0.114 0.886 43 H 0.119 0.881 44 H 0.414 0.586 45 H 0.070 0.930 46 H 0.076 0.924 47 H 0.050 0.950 48 H 0.057 0.943 49 H 0.077 0.923 50 H 0.113 0.887 51 H 0.396 0.604 52 H 0.277 0.723 53 H 0.078 0.922 54 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.313 16.455 -9.889 30.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.116 4.116 3 C -0.206 4.206 4 C -0.153 4.153 5 C -0.151 4.151 6 C -0.140 4.140 7 C -0.173 4.173 8 C 0.297 3.703 9 O -0.466 6.466 10 N -0.366 5.366 11 C 0.037 3.963 12 H 0.106 0.894 13 C -0.161 4.161 14 C -0.082 4.082 15 N -0.241 5.241 16 C -0.081 4.081 17 C 0.227 3.773 18 O -0.504 6.504 19 N -0.212 5.212 20 C -0.463 4.463 21 H 0.094 0.906 22 C -0.210 4.210 23 N -0.561 5.561 24 Si 0.814 3.186 25 H -0.198 1.198 26 H -0.194 1.194 27 H -0.199 1.199 28 C -0.091 4.091 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.132 0.868 43 H 0.137 0.863 44 H 0.251 0.749 45 H 0.089 0.911 46 H 0.095 0.905 47 H 0.068 0.932 48 H 0.076 0.924 49 H 0.094 0.906 50 H 0.131 0.869 51 H 0.230 0.770 52 H 0.087 0.913 53 H 0.096 0.904 54 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -24.893 15.379 -8.484 30.466 hybrid contribution 1.132 -0.267 -0.891 1.465 sum -23.761 15.112 -9.375 29.679 Atomic orbital electron populations 1.21861 0.95398 1.01646 1.01794 1.21126 0.95649 0.96642 0.98157 1.21899 1.01514 0.95605 1.01626 1.21642 0.95734 1.00154 0.97806 1.21617 0.95314 1.01089 0.97097 1.21292 0.93399 1.00692 0.98582 1.21746 0.97486 1.02864 0.95188 1.21435 0.81804 0.78435 0.88630 1.90699 1.56364 1.53202 1.46321 1.46153 1.07873 1.59233 1.23389 1.21571 0.94658 0.91312 0.88804 0.89376 1.22835 0.95124 0.96076 1.02025 1.23184 0.92725 0.97731 0.94607 1.64392 1.00821 1.10092 1.48810 1.21935 0.90183 0.95800 1.00154 1.20830 0.82904 0.90641 0.82893 1.90491 1.73333 1.38470 1.48062 1.41904 1.10344 1.15709 1.53244 1.19601 0.94182 0.94585 1.37970 0.90558 1.25967 0.97747 1.01289 0.96002 1.69655 1.16621 1.30099 1.39676 0.85037 0.77253 0.77720 0.78621 1.19822 1.19417 1.19886 1.23184 0.90663 0.91573 1.03715 0.92376 0.92900 0.92941 0.91146 0.92645 0.93031 0.91914 0.92523 0.92661 0.91179 0.90619 0.92829 0.93181 0.86828 0.86327 0.74890 0.91088 0.90543 0.93206 0.92398 0.90552 0.86948 0.76971 0.91335 0.90419 0.88506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.19 71.98 0.66 -0.74 16 2 C -0.10 -0.91 2.92 -10.79 -0.03 -0.94 16 3 C -0.15 -1.25 8.95 71.98 0.64 -0.61 16 4 C -0.12 -1.25 4.68 30.60 0.14 -1.11 16 5 C -0.11 -1.07 4.97 30.59 0.15 -0.92 16 6 C -0.10 -1.38 4.50 30.59 0.14 -1.24 16 7 C -0.13 -1.44 5.70 29.85 0.17 -1.27 16 8 C 0.51 9.61 7.83 87.66 0.69 10.30 16 9 O -0.59 -16.68 15.66 -3.03 -0.05 -16.72 16 10 N -0.71 -11.51 5.07 -438.38 -2.22 -13.74 16 11 C 0.14 3.06 3.31 45.87 0.15 3.21 16 12 H 0.09 2.14 7.60 -2.38 -0.02 2.12 16 13 C -0.12 -3.13 6.80 31.89 0.22 -2.91 16 14 C 0.05 1.39 5.94 86.74 0.52 1.91 16 15 N -0.52 -16.03 4.91 -887.04 -4.35 -20.38 16 16 C 0.05 1.65 5.19 85.56 0.44 2.10 16 17 C 0.44 20.71 7.61 87.66 0.67 21.37 16 18 O -0.62 -34.36 14.64 -3.06 -0.04 -34.41 16 19 N -0.57 -29.07 5.29 -306.98 -1.62 -30.70 16 20 C -0.33 -18.90 9.68 84.04 0.81 -18.09 16 21 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 22 C -0.01 -0.54 5.50 84.93 0.47 -0.08 16 23 N -0.92 -49.01 13.05 21.66 0.28 -48.72 16 24 Si 0.99 42.82 29.55 68.60 2.03 44.85 16 25 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 26 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 27 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 28 C 0.04 0.78 6.44 86.45 0.56 1.33 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.07 0.64 8.14 -2.39 -0.02 0.63 16 33 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.06 0.46 6.56 -2.39 -0.02 0.45 16 36 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.08 0.57 6.56 -2.39 -0.02 0.56 16 40 H 0.05 0.89 8.10 -2.39 -0.02 0.87 16 41 H 0.05 0.87 8.10 -2.39 -0.02 0.85 16 42 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.41 4.26 8.31 -92.71 -0.77 3.49 16 45 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.08 1.89 8.05 -2.39 -0.02 1.87 16 47 H 0.05 1.38 7.81 -2.39 -0.02 1.36 16 48 H 0.06 2.26 7.10 -2.39 -0.02 2.25 16 49 H 0.08 2.10 7.83 -2.38 -0.02 2.09 16 50 H 0.11 3.17 8.08 -2.39 -0.02 3.15 16 51 H 0.40 18.86 7.90 -92.70 -0.73 18.13 16 52 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 53 H 0.08 1.23 7.24 -2.39 -0.02 1.22 16 54 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -73.31 429.27 -0.21 -73.52 By element: Atomic # 1 Polarization: 34.61 SS G_CDS: -0.62 Total: 33.99 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: 6.40 Total: 12.31 kcal Atomic # 7 Polarization: -105.62 SS G_CDS: -7.91 Total: -113.53 kcal Atomic # 8 Polarization: -51.04 SS G_CDS: -0.09 Total: -51.13 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -73.31 -0.21 -73.52 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494728811.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.648 kcal (2) G-P(sol) polarization free energy of solvation -73.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds