Wall clock time and date at job start Sat Apr 11 2020 05:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47306 * 2 1 4 4 C 1.52995 * 109.47043 * 59.99839 * 3 2 1 5 5 C 1.53001 * 109.46739 * 300.00000 * 3 2 1 6 6 C 1.52993 * 109.47306 * 180.02562 * 3 2 1 7 7 C 1.50700 * 109.47318 * 179.97438 * 6 3 2 8 8 O 1.21285 * 119.99600 * 0.02562 * 7 6 3 9 9 N 1.34769 * 120.00669 * 179.97438 * 7 6 3 10 10 C 1.47436 * 125.64491 * 0.02562 * 9 7 6 11 11 C 1.54907 * 104.83049 * 155.83288 * 10 9 7 12 12 C 1.55157 * 101.58250 * 37.01321 * 11 10 9 13 13 H 1.09002 * 110.71883 * 83.03228 * 12 11 10 14 14 N 1.46895 * 110.72481 * 206.12745 * 12 11 10 15 15 C 1.46893 * 111.00318 * 271.15905 * 14 12 11 16 16 C 1.50708 * 109.47146 * 179.97438 * 15 14 12 17 17 O 1.21288 * 119.99815 * 359.97438 * 16 15 14 18 18 N 1.34774 * 119.99719 * 180.02562 * 16 15 14 19 19 C 1.37101 * 119.99349 * 180.02562 * 18 16 15 20 20 H 1.07991 * 120.00515 * 359.97438 * 19 18 16 21 21 C 1.38955 * 119.99490 * 179.97438 * 19 18 16 22 22 N 1.31413 * 120.00236 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99845 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47187 * 179.97438 * 23 21 19 25 25 H 1.48502 * 109.47194 * 300.00675 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00238 * 23 21 19 27 27 C 1.47322 * 125.62343 * 180.16665 * 9 7 6 28 28 H 1.08998 * 109.84567 * 300.48995 * 27 9 7 29 29 C 1.53005 * 110.06025 * 61.75015 * 27 9 7 30 30 H 1.09000 * 109.47466 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47546 * 300.00288 * 1 2 3 32 32 H 1.09005 * 109.47144 * 59.99790 * 1 2 3 33 33 H 1.09001 * 109.47546 * 239.99712 * 2 1 3 34 34 H 1.08996 * 109.47123 * 119.99578 * 2 1 3 35 35 H 1.09001 * 109.46957 * 180.02562 * 4 3 2 36 36 H 1.09006 * 109.47388 * 299.99912 * 4 3 2 37 37 H 1.08996 * 109.47375 * 60.00429 * 4 3 2 38 38 H 1.09002 * 109.47533 * 299.99859 * 5 3 2 39 39 H 1.09003 * 109.47488 * 59.99748 * 5 3 2 40 40 H 1.09001 * 109.47249 * 179.97438 * 5 3 2 41 41 H 1.09001 * 109.47546 * 59.99712 * 6 3 2 42 42 H 1.08996 * 109.47123 * 299.99578 * 6 3 2 43 43 H 1.08999 * 110.36457 * 37.00080 * 10 9 7 44 44 H 1.08991 * 110.45904 * 274.72447 * 10 9 7 45 45 H 1.08992 * 111.01070 * 278.93376 * 11 10 9 46 46 H 1.09002 * 111.00211 * 155.08289 * 11 10 9 47 47 H 1.00899 * 111.00063 * 147.20081 * 14 12 11 48 48 H 1.09002 * 109.47091 * 59.99845 * 15 14 12 49 49 H 1.09000 * 109.47343 * 299.99463 * 15 14 12 50 50 H 0.96996 * 120.00564 * 359.97438 * 18 16 15 51 51 H 0.97001 * 119.99781 * 179.97438 * 22 21 19 52 52 H 1.09003 * 109.46677 * 177.73744 * 29 27 9 53 53 H 1.09003 * 109.47101 * 297.73457 * 29 27 9 54 54 H 1.08998 * 109.47010 * 57.73659 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1638 1.2492 5 6 1.5300 2.1637 -1.2493 6 6 3.5699 1.4425 -0.0006 7 6 4.0723 2.8633 -0.0013 8 8 3.2841 3.7852 -0.0008 9 7 5.3973 3.1097 -0.0014 10 6 6.4610 2.0888 -0.0015 11 6 7.6931 2.8000 -0.6146 12 6 7.5500 4.2302 -0.0303 13 1 7.9672 4.2793 0.9755 14 7 8.1947 5.2169 -0.9070 15 6 9.6104 5.3886 -0.5549 16 6 10.2370 6.4054 -1.4741 17 8 9.5698 6.9345 -2.3378 18 7 11.5388 6.7259 -1.3369 19 6 12.1086 7.6513 -2.1728 20 1 11.5144 8.1230 -2.9413 21 6 13.4507 7.9822 -2.0310 22 7 14.1737 7.4085 -1.0955 23 14 14.2273 9.2425 -3.1703 24 1 15.6583 9.4165 -2.8140 25 1 14.1199 8.7726 -4.5750 26 1 13.5207 10.5407 -3.0274 27 6 6.0220 4.4439 0.0015 28 1 5.7073 5.0018 -0.8805 29 6 5.6291 5.2046 1.2696 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 1.8930 3.1916 1.2489 36 1 0.4399 2.1638 1.2492 37 1 1.8933 1.6500 2.1392 38 1 1.8933 1.6499 -2.1393 39 1 0.4399 2.1637 -1.2493 40 1 1.8929 3.1915 -1.2491 41 1 3.9330 0.9288 -0.8908 42 1 3.9336 0.9287 0.8891 43 1 6.1696 1.2374 -0.6164 44 1 6.6778 1.7644 1.0162 45 1 7.6342 2.8149 -1.7029 46 1 8.6198 2.3328 -0.2815 47 1 7.7057 6.0990 -0.8797 48 1 10.1292 4.4357 -0.6602 49 1 9.6892 5.7332 0.4762 50 1 12.0725 6.3025 -0.6464 51 1 15.1106 7.6393 -0.9968 52 1 6.1281 6.1737 1.2812 53 1 4.5492 5.3518 1.2851 54 1 5.9302 4.6304 2.1457 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676646008.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:56 Heat of formation + Delta-G solvation = -103.763534 kcal Electronic energy + Delta-G solvation = -30156.217202 eV Core-core repulsion = 26126.474081 eV Total energy + Delta-G solvation = -4029.743121 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.53769 -40.23838 -39.48716 -37.70723 -36.18407 -35.53052 -33.28000 -32.72729 -31.89837 -31.30858 -28.84351 -28.19990 -28.12496 -26.49318 -25.16661 -24.79249 -23.53294 -21.58151 -21.14061 -20.10932 -19.80193 -19.28570 -18.13408 -17.68204 -17.43813 -16.84870 -16.41999 -16.29340 -15.98823 -15.79999 -15.65727 -15.56148 -15.25840 -14.72830 -14.58039 -14.44529 -14.33649 -14.07067 -13.84759 -13.73800 -13.48125 -13.32951 -13.12146 -13.01622 -12.84956 -12.79976 -12.64484 -12.64134 -12.43026 -12.35562 -12.15192 -12.12346 -11.96246 -11.90496 -11.68159 -11.64602 -11.50114 -11.36744 -11.30186 -10.38352 -10.31316 -10.01144 -9.60163 -9.37974 -8.46312 -5.94894 1.39970 1.42186 1.52726 1.71352 1.94328 2.06106 2.29907 2.92300 3.21063 3.34075 3.50961 3.68192 3.76123 3.80565 3.94611 4.05573 4.19714 4.27513 4.29200 4.33722 4.39095 4.43428 4.50605 4.51320 4.56212 4.60897 4.65792 4.68616 4.74248 4.75587 4.83757 4.88884 4.95171 4.99293 5.06840 5.13169 5.14192 5.17883 5.20861 5.26329 5.26774 5.29983 5.41323 5.42199 5.45065 5.61560 5.71995 5.89650 6.10604 6.29599 6.60715 6.63003 7.13178 7.28145 7.56863 8.12637 8.70613 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.034409 B = 0.001748 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.539444 B =16018.495172 C =16131.735320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.108 4.108 3 C -0.046 4.046 4 C -0.150 4.150 5 C -0.152 4.152 6 C -0.122 4.122 7 C 0.521 3.479 8 O -0.565 6.565 9 N -0.615 5.615 10 C 0.101 3.899 11 C -0.122 4.122 12 C 0.081 3.919 13 H 0.078 0.922 14 N -0.672 5.672 15 C 0.069 3.931 16 C 0.436 3.564 17 O -0.626 6.626 18 N -0.571 5.571 19 C -0.336 4.336 20 H 0.077 0.923 21 C -0.010 4.010 22 N -0.918 5.918 23 Si 0.991 3.009 24 H -0.269 1.269 25 H -0.273 1.273 26 H -0.273 1.273 27 C 0.136 3.864 28 H 0.055 0.945 29 C -0.154 4.154 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.050 0.950 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.108 0.892 42 H 0.114 0.886 43 H 0.100 0.900 44 H 0.093 0.907 45 H 0.069 0.931 46 H 0.102 0.898 47 H 0.343 0.657 48 H 0.110 0.890 49 H 0.070 0.930 50 H 0.397 0.603 51 H 0.278 0.722 52 H 0.064 0.936 53 H 0.052 0.948 54 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.601 -19.780 8.979 29.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.146 4.146 3 C -0.046 4.046 4 C -0.207 4.207 5 C -0.209 4.209 6 C -0.161 4.161 7 C 0.312 3.688 8 O -0.445 6.445 9 N -0.350 5.350 10 C -0.021 4.021 11 C -0.161 4.161 12 C -0.029 4.029 13 H 0.096 0.904 14 N -0.305 5.305 15 C -0.064 4.064 16 C 0.224 3.776 17 O -0.512 6.512 18 N -0.209 5.209 19 C -0.466 4.466 20 H 0.095 0.905 21 C -0.210 4.210 22 N -0.559 5.559 23 Si 0.815 3.185 24 H -0.194 1.194 25 H -0.198 1.198 26 H -0.199 1.199 27 C 0.032 3.968 28 H 0.073 0.927 29 C -0.212 4.212 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.126 0.874 42 H 0.132 0.868 43 H 0.118 0.882 44 H 0.111 0.889 45 H 0.087 0.913 46 H 0.120 0.880 47 H 0.162 0.838 48 H 0.128 0.872 49 H 0.087 0.913 50 H 0.231 0.769 51 H 0.087 0.913 52 H 0.083 0.917 53 H 0.071 0.929 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -20.200 -19.399 7.969 29.118 hybrid contribution 0.730 1.475 0.386 1.690 sum -19.470 -17.924 8.354 27.752 Atomic orbital electron populations 1.21878 0.95851 1.01794 1.01820 1.21545 0.96157 0.94169 1.02694 1.20294 0.92464 0.96039 0.95815 1.22068 1.00883 1.01205 0.96519 1.22090 1.00928 1.01173 0.96691 1.21807 0.96652 0.91742 1.05892 1.20998 0.79987 0.92809 0.74998 1.90584 1.54550 1.48180 1.51141 1.48757 1.05584 1.07620 1.73006 1.22568 0.85604 0.91286 1.02617 1.22883 0.98806 0.93268 1.01137 1.22689 0.91258 0.93573 0.95418 0.90394 1.60170 1.01312 1.14440 1.54560 1.21569 0.89945 0.98685 0.96170 1.20914 0.82506 0.86497 0.87700 1.90503 1.63058 1.58341 1.39330 1.41903 1.09027 1.37992 1.31952 1.19620 0.94305 1.18954 1.13710 0.90485 1.25999 0.96141 1.00089 0.98819 1.69657 1.09098 1.43794 1.33319 0.85015 0.77315 0.78029 0.78129 1.19384 1.19820 1.19864 1.21520 0.92145 0.84992 0.98169 0.92733 1.22050 1.01920 1.00216 0.96983 0.92075 0.92736 0.92994 0.91245 0.90882 0.92631 0.92722 0.92668 0.93119 0.92635 0.92784 0.87393 0.86810 0.88184 0.88873 0.91258 0.87963 0.83813 0.87219 0.91262 0.76860 0.91274 0.91741 0.92872 0.91260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 9.21 71.98 0.66 -1.02 16 2 C -0.11 -1.11 4.99 30.59 0.15 -0.96 16 3 C -0.05 -0.67 0.54 -52.18 -0.03 -0.70 16 4 C -0.15 -2.56 7.82 71.98 0.56 -2.00 16 5 C -0.15 -2.81 7.82 71.98 0.56 -2.25 16 6 C -0.12 -1.59 3.77 29.85 0.11 -1.48 16 7 C 0.52 10.92 7.06 87.66 0.62 11.54 16 8 O -0.56 -15.99 10.43 -3.05 -0.03 -16.02 16 9 N -0.62 -11.90 3.08 -787.34 -2.42 -14.33 16 10 C 0.10 1.26 6.69 86.85 0.58 1.84 16 11 C -0.12 -2.09 6.76 31.99 0.22 -1.87 16 12 C 0.08 1.74 2.78 46.10 0.13 1.87 16 13 H 0.08 1.46 7.56 -2.39 -0.02 1.44 16 14 N -0.67 -20.38 5.94 -489.46 -2.91 -23.29 16 15 C 0.07 2.21 6.04 85.56 0.52 2.72 16 16 C 0.44 20.41 7.82 87.66 0.69 21.09 16 17 O -0.63 -34.75 15.78 -3.05 -0.05 -34.79 16 18 N -0.57 -28.87 5.29 -306.98 -1.62 -30.50 16 19 C -0.34 -19.03 9.68 84.04 0.81 -18.22 16 20 H 0.08 4.67 7.16 -2.92 -0.02 4.65 16 21 C -0.01 -0.55 5.50 84.93 0.47 -0.09 16 22 N -0.92 -48.85 13.05 21.66 0.28 -48.56 16 23 Si 0.99 42.77 29.55 68.60 2.03 44.80 16 24 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 25 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 26 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 27 C 0.14 3.16 2.98 45.28 0.13 3.30 16 28 H 0.05 1.62 7.93 -2.39 -0.02 1.60 16 29 C -0.15 -3.41 9.11 71.98 0.66 -2.75 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.05 0.62 6.43 -2.39 -0.02 0.60 16 32 H 0.05 0.62 6.43 -2.38 -0.02 0.60 16 33 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.05 1.30 5.51 -2.39 -0.01 1.28 16 36 H 0.05 0.89 6.43 -2.38 -0.02 0.88 16 37 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.05 0.97 6.43 -2.39 -0.02 0.95 16 40 H 0.05 1.36 5.51 -2.39 -0.01 1.34 16 41 H 0.11 1.08 7.85 -2.39 -0.02 1.06 16 42 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.10 0.83 7.48 -2.39 -0.02 0.81 16 44 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.34 11.45 8.08 -89.69 -0.72 10.73 16 48 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 49 H 0.07 1.92 8.08 -2.39 -0.02 1.91 16 50 H 0.40 18.86 7.90 -92.71 -0.73 18.13 16 51 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 52 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 53 H 0.05 1.38 6.94 -2.39 -0.02 1.36 16 54 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -71.36 414.74 1.56 -69.80 By element: Atomic # 1 Polarization: 42.42 SS G_CDS: -0.56 Total: 41.86 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: 6.84 Total: 11.03 kcal Atomic # 7 Polarization: -110.01 SS G_CDS: -6.67 Total: -116.68 kcal Atomic # 8 Polarization: -50.73 SS G_CDS: -0.08 Total: -50.81 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -71.36 1.56 -69.80 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676646008.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.960 kcal (2) G-P(sol) polarization free energy of solvation -71.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds