Wall clock time and date at job start Sat Apr 11 2020 05:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46982 * 2 1 4 4 C 1.52994 * 109.47250 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47358 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.47418 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47340 * 179.97438 * 6 5 4 8 8 O 1.21282 * 119.99780 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00391 * 179.97438 * 7 6 5 10 10 C 1.47428 * 125.64259 * 0.02870 * 9 7 6 11 11 C 1.54910 * 104.83107 * 155.82379 * 10 9 7 12 12 C 1.55157 * 101.58207 * 37.00564 * 11 10 9 13 13 H 1.09006 * 110.72264 * 83.03880 * 12 11 10 14 14 N 1.46895 * 110.72451 * 206.13161 * 12 11 10 15 15 C 1.46893 * 111.00318 * 273.54948 * 14 12 11 16 16 C 1.50708 * 109.47146 * 179.97438 * 15 14 12 17 17 O 1.21288 * 119.99815 * 359.97438 * 16 15 14 18 18 N 1.34774 * 119.99719 * 180.02562 * 16 15 14 19 19 C 1.37101 * 119.99349 * 180.02562 * 18 16 15 20 20 H 1.07991 * 120.00515 * 359.97438 * 19 18 16 21 21 C 1.38955 * 119.99490 * 179.97438 * 19 18 16 22 22 N 1.31413 * 120.00236 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99845 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47187 * 179.97438 * 23 21 19 25 25 H 1.48502 * 109.47194 * 300.00675 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00238 * 23 21 19 27 27 C 1.47012 * 125.65109 * 179.97438 * 9 7 6 28 28 H 1.08990 * 109.88826 * 300.52677 * 27 9 7 29 29 C 1.53002 * 109.88066 * 61.69525 * 27 9 7 30 30 H 1.09001 * 109.47013 * 60.00206 * 1 2 3 31 31 H 1.09006 * 109.47046 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47464 * 300.00170 * 1 2 3 33 33 H 1.08998 * 109.47375 * 240.00359 * 2 1 3 34 34 H 1.09001 * 109.47013 * 119.99794 * 2 1 3 35 35 H 1.09007 * 109.46931 * 59.99963 * 3 2 1 36 36 H 1.09000 * 109.47439 * 300.00152 * 3 2 1 37 37 H 1.09007 * 109.46968 * 60.00249 * 4 3 2 38 38 H 1.09003 * 109.47726 * 300.00413 * 4 3 2 39 39 H 1.08995 * 109.47345 * 59.99727 * 5 4 3 40 40 H 1.09001 * 109.46784 * 299.99904 * 5 4 3 41 41 H 1.08993 * 109.46996 * 59.99233 * 6 5 4 42 42 H 1.09001 * 109.46639 * 299.99471 * 6 5 4 43 43 H 1.08996 * 110.37327 * 36.98363 * 10 9 7 44 44 H 1.08999 * 110.45824 * 274.70726 * 10 9 7 45 45 H 1.08994 * 111.00350 * 278.93420 * 11 10 9 46 46 H 1.08996 * 111.03656 * 155.09172 * 11 10 9 47 47 H 1.00899 * 111.00063 * 149.59124 * 14 12 11 48 48 H 1.09002 * 109.47091 * 59.99845 * 15 14 12 49 49 H 1.09000 * 109.47343 * 299.99463 * 15 14 12 50 50 H 0.96996 * 120.00564 * 359.97438 * 18 16 15 51 51 H 0.97001 * 119.99781 * 179.97438 * 22 21 19 52 52 H 1.09002 * 109.47003 * 177.81027 * 29 27 9 53 53 H 1.09006 * 109.47111 * 297.80590 * 29 27 9 54 54 H 1.08993 * 109.47433 * 57.80313 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8851 0.0013 6 6 5.6099 2.8852 0.0013 7 6 6.1122 4.3060 0.0013 8 8 5.3240 5.2278 0.0018 9 7 7.4373 4.5524 0.0018 10 6 8.5009 3.5315 0.0018 11 6 9.7332 4.2428 -0.6108 12 6 9.5899 5.6729 -0.0263 13 1 10.0068 5.7220 0.9796 14 7 10.2348 6.6597 -0.9028 15 6 11.6635 6.7899 -0.5873 16 6 12.2899 7.8081 -1.5051 17 8 11.6128 8.3696 -2.3401 18 7 13.6027 8.0939 -1.3985 19 6 14.1723 9.0205 -2.2331 20 1 13.5693 9.5210 -2.9761 21 6 15.5257 9.3155 -2.1230 22 7 16.2595 8.7068 -1.2186 23 14 16.3021 10.5775 -3.2606 24 1 17.7463 10.7096 -2.9413 25 1 16.1444 10.1369 -4.6699 26 1 15.6325 11.8899 -3.0745 27 6 8.0613 5.8835 0.0013 28 1 7.7478 6.4397 -0.8820 29 6 7.6638 6.6449 1.2675 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6766 1.9564 -0.8900 37 1 3.9336 0.9287 -0.8892 38 1 3.9330 0.9289 0.8908 39 1 3.7162 3.3987 0.8912 40 1 3.7169 3.3992 -0.8887 41 1 5.9733 2.3717 -0.8888 42 1 5.9732 2.3711 0.8911 43 1 8.2097 2.6801 -0.6133 44 1 8.7174 3.2069 1.0196 45 1 9.6745 4.2579 -1.6991 46 1 10.6601 3.7758 -0.2780 47 1 9.7690 7.5530 -0.8458 48 1 12.1551 5.8267 -0.7243 49 1 11.7792 7.1131 0.4473 50 1 14.1443 7.6446 -0.7310 51 1 17.2043 8.9125 -1.1420 52 1 8.1607 7.6150 1.2791 53 1 6.5835 6.7899 1.2802 54 1 7.9638 6.0724 2.1451 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676686276.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:01 Heat of formation + Delta-G solvation = -123.236996 kcal Electronic energy + Delta-G solvation = -28904.988385 eV Core-core repulsion = 24874.400831 eV Total energy + Delta-G solvation = -4030.587554 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.36819 -40.15152 -39.00690 -37.21700 -36.19706 -35.54205 -34.32036 -33.26828 -32.48439 -31.75900 -29.91473 -28.39971 -26.50289 -25.97844 -24.94479 -23.72061 -22.18365 -21.83556 -21.43628 -21.07467 -19.99329 -19.70818 -18.12795 -17.65911 -17.53738 -16.97755 -16.85153 -16.38124 -16.21989 -15.98080 -15.64657 -15.32182 -14.98161 -14.77927 -14.71268 -14.47608 -14.29803 -14.12938 -13.84162 -13.77873 -13.55250 -13.47335 -13.20346 -13.15050 -13.10630 -12.83661 -12.69327 -12.44183 -12.41717 -12.30024 -12.25076 -12.12268 -11.95000 -11.77406 -11.66225 -11.58947 -11.50023 -11.46874 -11.32019 -10.77441 -10.34351 -10.00913 -9.68113 -9.38727 -8.46268 -5.94776 1.39981 1.42250 1.52697 1.65233 1.91643 2.06320 2.29955 2.91833 3.21275 3.32034 3.50548 3.66714 3.74424 3.85702 4.00942 4.04259 4.20110 4.22577 4.26310 4.29239 4.33151 4.36368 4.38248 4.50721 4.54815 4.57005 4.58080 4.61192 4.70130 4.75582 4.81697 4.84412 4.91130 4.95900 4.99742 5.06701 5.11384 5.14788 5.16020 5.24355 5.26243 5.28736 5.38031 5.41478 5.43287 5.50499 5.56278 5.89466 6.10499 6.29053 6.56564 6.61093 7.13405 7.18084 7.57101 8.12947 8.70762 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.037026 B = 0.001455 C = 0.001448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.043212 B =19243.041584 C =19331.568650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.123 4.123 3 C -0.123 4.123 4 C -0.112 4.112 5 C -0.102 4.102 6 C -0.126 4.126 7 C 0.517 3.483 8 O -0.589 6.589 9 N -0.614 5.614 10 C 0.101 3.899 11 C -0.123 4.123 12 C 0.081 3.919 13 H 0.079 0.921 14 N -0.673 5.673 15 C 0.069 3.931 16 C 0.436 3.564 17 O -0.626 6.626 18 N -0.571 5.571 19 C -0.337 4.337 20 H 0.077 0.923 21 C -0.009 4.009 22 N -0.918 5.918 23 Si 0.990 3.010 24 H -0.269 1.269 25 H -0.273 1.273 26 H -0.273 1.273 27 C 0.134 3.866 28 H 0.054 0.946 29 C -0.155 4.155 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.052 0.948 40 H 0.048 0.952 41 H 0.113 0.887 42 H 0.119 0.881 43 H 0.103 0.897 44 H 0.096 0.904 45 H 0.069 0.931 46 H 0.104 0.896 47 H 0.343 0.657 48 H 0.111 0.889 49 H 0.070 0.930 50 H 0.397 0.603 51 H 0.278 0.722 52 H 0.065 0.935 53 H 0.049 0.951 54 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.482 -21.567 9.149 31.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.160 4.160 3 C -0.160 4.160 4 C -0.149 4.149 5 C -0.140 4.140 6 C -0.165 4.165 7 C 0.308 3.692 8 O -0.469 6.469 9 N -0.348 5.348 10 C -0.021 4.021 11 C -0.162 4.162 12 C -0.029 4.029 13 H 0.097 0.903 14 N -0.305 5.305 15 C -0.063 4.063 16 C 0.223 3.777 17 O -0.513 6.513 18 N -0.208 5.208 19 C -0.466 4.466 20 H 0.095 0.905 21 C -0.209 4.209 22 N -0.559 5.559 23 Si 0.814 3.186 24 H -0.194 1.194 25 H -0.198 1.198 26 H -0.198 1.198 27 C 0.030 3.970 28 H 0.072 0.928 29 C -0.213 4.213 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.131 0.869 42 H 0.137 0.863 43 H 0.121 0.879 44 H 0.114 0.886 45 H 0.088 0.912 46 H 0.122 0.878 47 H 0.162 0.838 48 H 0.128 0.872 49 H 0.088 0.912 50 H 0.231 0.769 51 H 0.087 0.913 52 H 0.084 0.916 53 H 0.068 0.932 54 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -21.106 -21.167 8.142 30.981 hybrid contribution 0.683 1.557 0.387 1.744 sum -20.423 -19.610 8.529 29.570 Atomic orbital electron populations 1.21802 0.96033 1.01848 1.01641 1.21524 0.95814 0.96364 1.02340 1.21625 0.95674 0.97126 1.01613 1.21562 0.95209 0.95037 1.03092 1.21307 0.93245 0.97611 1.01832 1.21717 0.97307 0.91063 1.06429 1.21229 0.80126 0.93024 0.74783 1.90679 1.55617 1.48451 1.52163 1.48665 1.05592 1.07850 1.72678 1.22608 0.85396 0.91220 1.02844 1.22899 0.98898 0.93194 1.01190 1.22680 0.91057 0.93638 0.95489 0.90318 1.60161 1.01418 1.13694 1.55263 1.21561 0.89553 0.98813 0.96410 1.20922 0.82499 0.86674 0.87564 1.90504 1.62883 1.56935 1.40933 1.41894 1.08036 1.37552 1.33329 1.19622 0.93371 1.18515 1.15112 0.90509 1.25979 0.96076 1.00026 0.98826 1.69655 1.08257 1.43325 1.34673 0.85036 0.77325 0.78080 0.78192 1.19362 1.19801 1.19846 1.21475 0.92354 0.85025 0.98182 0.92820 1.22064 1.01753 1.00381 0.97088 0.93082 0.92250 0.92932 0.91740 0.91544 0.92558 0.92806 0.90974 0.90640 0.92898 0.93350 0.86873 0.86316 0.87877 0.88623 0.91210 0.87760 0.83817 0.87151 0.91217 0.76853 0.91262 0.91558 0.93184 0.91085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.91 71.98 0.71 -0.74 16 2 C -0.12 -1.13 5.93 30.59 0.18 -0.95 16 3 C -0.12 -1.38 5.21 30.59 0.16 -1.22 16 4 C -0.11 -1.10 5.21 30.59 0.16 -0.94 16 5 C -0.10 -1.53 4.50 30.60 0.14 -1.39 16 6 C -0.13 -1.60 4.71 29.85 0.14 -1.46 16 7 C 0.52 11.54 7.64 87.66 0.67 12.21 16 8 O -0.59 -18.67 15.03 -3.04 -0.05 -18.71 16 9 N -0.61 -12.26 3.06 -788.08 -2.41 -14.68 16 10 C 0.10 1.23 6.69 86.85 0.58 1.81 16 11 C -0.12 -2.08 6.71 31.99 0.21 -1.86 16 12 C 0.08 1.76 2.76 46.11 0.13 1.89 16 13 H 0.08 1.46 7.61 -2.38 -0.02 1.44 16 14 N -0.67 -20.43 5.93 -489.44 -2.90 -23.33 16 15 C 0.07 2.21 6.02 85.56 0.52 2.72 16 16 C 0.44 20.36 7.82 87.66 0.69 21.05 16 17 O -0.63 -34.76 15.78 -3.05 -0.05 -34.81 16 18 N -0.57 -28.77 5.29 -306.98 -1.62 -30.40 16 19 C -0.34 -19.03 9.68 84.04 0.81 -18.22 16 20 H 0.08 4.65 7.16 -2.92 -0.02 4.63 16 21 C -0.01 -0.48 5.50 84.93 0.47 -0.01 16 22 N -0.92 -48.82 13.05 21.66 0.28 -48.54 16 23 Si 0.99 42.71 29.55 68.60 2.03 44.73 16 24 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 26 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 27 C 0.13 3.21 2.98 45.35 0.14 3.34 16 28 H 0.05 1.64 7.97 -2.39 -0.02 1.62 16 29 C -0.15 -3.55 9.10 71.98 0.65 -2.90 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 32 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 36 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 38 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.05 0.96 8.10 -2.39 -0.02 0.94 16 40 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 41 H 0.11 1.01 7.85 -2.39 -0.02 0.99 16 42 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.10 0.79 7.48 -2.39 -0.02 0.77 16 44 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.34 11.49 8.15 -89.69 -0.73 10.76 16 48 H 0.11 3.06 8.13 -2.39 -0.02 3.04 16 49 H 0.07 1.92 8.08 -2.39 -0.02 1.90 16 50 H 0.40 18.81 7.90 -92.71 -0.73 18.08 16 51 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 52 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 53 H 0.05 1.36 6.91 -2.38 -0.02 1.35 16 54 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -73.90 433.28 1.04 -72.86 By element: Atomic # 1 Polarization: 40.13 SS G_CDS: -0.59 Total: 39.54 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: 6.36 Total: 13.34 kcal Atomic # 7 Polarization: -110.29 SS G_CDS: -6.65 Total: -116.94 kcal Atomic # 8 Polarization: -53.43 SS G_CDS: -0.09 Total: -53.52 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Total: -73.90 1.04 -72.86 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676686276.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.376 kcal (2) G-P(sol) polarization free energy of solvation -73.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds