Wall clock time and date at job start Sat Apr 11 2020 05:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47090 * 2 1 4 4 C 1.52998 * 109.47630 * 64.99791 * 3 2 1 5 5 C 1.52996 * 109.47474 * 185.28721 * 4 3 2 6 6 C 1.53007 * 109.46952 * 184.99983 * 3 2 1 7 7 C 1.50700 * 109.47363 * 67.20481 * 6 3 2 8 8 O 1.21287 * 119.99694 * 356.43462 * 7 6 3 9 9 N 1.34769 * 120.00101 * 176.43062 * 7 6 3 10 10 C 1.47426 * 125.64747 * 359.97438 * 9 7 6 11 11 C 1.54914 * 104.83128 * 204.16048 * 10 9 7 12 12 H 1.08999 * 111.00065 * 81.06317 * 11 10 9 13 13 N 1.46902 * 111.00314 * 204.87607 * 11 10 9 14 14 C 1.46900 * 110.99698 * 270.41785 * 13 11 10 15 15 C 1.50708 * 109.46641 * 180.02562 * 14 13 11 16 16 O 1.21296 * 120.00105 * 359.97438 * 15 14 13 17 17 N 1.34772 * 119.99936 * 180.02562 * 15 14 13 18 18 C 1.37096 * 120.00023 * 179.97438 * 17 15 14 19 19 H 1.07997 * 120.00022 * 359.97438 * 18 17 15 20 20 C 1.38945 * 120.00195 * 179.97438 * 18 17 15 21 21 N 1.31421 * 120.00049 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00316 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47020 * 60.00130 * 22 20 18 24 24 H 1.48502 * 109.47186 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47289 * 300.00576 * 22 20 18 26 26 C 1.55161 * 101.61708 * 322.97251 * 11 10 9 27 27 C 1.47019 * 125.65044 * 180.02562 * 9 7 6 28 28 H 1.09002 * 109.88250 * 298.48262 * 27 9 7 29 29 C 1.53000 * 109.88371 * 59.48997 * 27 9 7 30 30 H 1.09001 * 109.47120 * 300.00535 * 1 2 3 31 31 H 1.09002 * 109.46843 * 60.00163 * 1 2 3 32 32 H 1.09001 * 109.47123 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47644 * 239.99474 * 2 1 3 34 34 H 1.09007 * 109.47264 * 119.99638 * 2 1 3 35 35 H 1.08997 * 109.47019 * 304.99498 * 3 2 1 36 36 H 1.09004 * 109.46740 * 305.28746 * 4 3 2 37 37 H 1.09000 * 109.47338 * 65.28408 * 4 3 2 38 38 H 1.09002 * 109.47057 * 54.73227 * 5 4 3 39 39 H 1.09000 * 109.47352 * 174.73976 * 5 4 3 40 40 H 1.09005 * 109.46979 * 294.73884 * 5 4 3 41 41 H 1.09001 * 109.47167 * 307.20485 * 6 3 2 42 42 H 1.09000 * 109.46764 * 187.20532 * 6 3 2 43 43 H 1.08991 * 110.36668 * 85.32681 * 10 9 7 44 44 H 1.09000 * 110.36500 * 322.99757 * 10 9 7 45 45 H 1.00892 * 111.00130 * 34.37367 * 13 11 10 46 46 H 1.08996 * 109.47172 * 299.99875 * 14 13 11 47 47 H 1.08994 * 109.47088 * 60.00983 * 14 13 11 48 48 H 0.97001 * 119.99922 * 359.97438 * 17 15 14 49 49 H 0.96992 * 119.99947 * 179.97438 * 21 20 18 50 50 H 1.08995 * 110.71975 * 153.88108 * 26 11 10 51 51 H 1.08993 * 110.71787 * 277.15721 * 26 11 10 52 52 H 1.08999 * 109.47234 * 58.54090 * 29 27 9 53 53 H 1.08993 * 109.47810 * 178.55123 * 29 27 9 54 54 H 1.09010 * 109.46845 * 298.55016 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6352 2.1267 1.3073 5 6 2.0289 3.6041 1.2529 6 6 3.5648 1.4443 -0.1257 7 6 3.9572 0.9327 -1.4878 8 8 3.1054 0.5388 -2.2561 9 7 5.2546 0.9130 -1.8522 10 6 6.3873 1.3604 -1.0214 11 6 7.5020 1.7246 -2.0337 12 1 7.3435 2.7204 -2.4477 13 7 8.8301 1.6200 -1.4146 14 6 9.2245 2.8930 -0.7966 15 6 10.5892 2.7474 -0.1739 16 8 11.1752 1.6873 -0.2382 17 7 11.1580 3.7947 0.4553 18 6 12.3992 3.6621 1.0222 19 1 12.9210 2.7183 0.9649 20 6 12.9859 4.7420 1.6704 21 7 12.3512 5.8907 1.7397 22 14 14.6768 4.5612 2.4435 23 1 15.6630 4.1925 1.3962 24 1 15.0760 5.8483 3.0675 25 1 14.6359 3.4992 3.4806 26 6 7.3068 0.6335 -3.1194 27 6 5.7746 0.4427 -3.1445 28 1 5.5323 -0.6113 -3.2802 29 6 5.1663 1.2667 -4.2811 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6054 1.9815 -0.8418 36 1 0.5568 2.0427 1.4425 37 1 2.1446 1.6454 2.1421 38 1 1.5944 4.0634 0.3650 39 1 1.6581 4.1119 2.1432 40 1 3.1148 3.6895 1.2116 41 1 3.9934 0.7998 0.6418 42 1 3.9387 2.4601 0.0024 43 1 6.7185 0.5550 -0.3661 44 1 6.1058 2.2357 -0.4359 45 1 8.8575 0.8680 -0.7426 46 1 9.2542 3.6726 -1.5578 47 1 8.5009 3.1631 -0.0276 48 1 10.6892 4.6423 0.5070 49 1 12.7606 6.6445 2.1925 50 1 7.6685 0.9827 -4.0865 51 1 7.8061 -0.2913 -2.8307 52 1 5.4057 2.3199 -4.1349 53 1 5.5755 0.9298 -5.2335 54 1 4.0839 1.1373 -4.2847 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676767753.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:11 Heat of formation + Delta-G solvation = -114.396119 kcal Electronic energy + Delta-G solvation = -30119.697891 eV Core-core repulsion = 26089.493706 eV Total energy + Delta-G solvation = -4030.204185 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.47796 -40.16187 -39.27575 -37.57915 -36.19583 -35.54139 -33.27800 -33.21358 -32.56392 -31.00182 -30.43198 -27.88167 -26.78863 -26.16447 -25.60735 -23.58512 -23.20626 -21.82889 -21.09608 -20.68072 -19.93650 -19.89464 -18.24102 -17.71529 -17.33576 -16.91001 -16.49955 -16.30857 -16.05591 -15.72063 -15.51679 -15.24890 -15.04381 -15.00776 -14.59912 -14.40660 -14.33948 -14.06062 -13.85549 -13.74608 -13.62435 -13.43773 -13.30269 -13.05298 -13.00346 -12.86414 -12.75908 -12.70691 -12.41024 -12.36925 -12.26134 -12.12168 -12.01501 -11.94095 -11.60345 -11.47682 -11.46856 -11.37341 -11.28639 -10.60299 -10.31539 -9.98829 -9.70700 -9.31396 -8.44436 -5.92662 1.41390 1.43797 1.54010 1.64113 1.92935 2.08913 2.30941 2.89114 3.23323 3.38619 3.49979 3.70650 3.78455 3.80854 3.90796 4.01709 4.11088 4.16649 4.27001 4.36201 4.36409 4.41539 4.46383 4.47602 4.52634 4.59887 4.62214 4.64156 4.67415 4.71143 4.78340 4.81532 4.94049 4.94865 4.97263 5.07257 5.11742 5.11921 5.14467 5.25578 5.29487 5.32384 5.43399 5.44450 5.46607 5.54077 5.56021 5.90658 6.11177 6.36903 6.52843 6.62817 7.15443 7.18472 7.59752 8.15006 8.72490 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013239 B = 0.002171 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.472652 B =12895.732922 C =14402.473798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.124 4.124 3 C -0.066 4.066 4 C -0.117 4.117 5 C -0.157 4.157 6 C -0.133 4.133 7 C 0.523 3.477 8 O -0.569 6.569 9 N -0.612 5.612 10 C 0.070 3.930 11 C 0.083 3.917 12 H 0.103 0.897 13 N -0.664 5.664 14 C 0.064 3.936 15 C 0.437 3.563 16 O -0.624 6.624 17 N -0.573 5.573 18 C -0.332 4.332 19 H 0.079 0.921 20 C -0.013 4.013 21 N -0.919 5.919 22 Si 0.990 3.010 23 H -0.273 1.273 24 H -0.272 1.272 25 H -0.271 1.271 26 C -0.109 4.109 27 C 0.133 3.867 28 H 0.066 0.934 29 C -0.154 4.154 30 H 0.065 0.935 31 H 0.044 0.956 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.050 0.950 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.104 0.896 42 H 0.107 0.893 43 H 0.075 0.925 44 H 0.093 0.907 45 H 0.349 0.651 46 H 0.106 0.894 47 H 0.074 0.926 48 H 0.397 0.603 49 H 0.277 0.723 50 H 0.095 0.905 51 H 0.078 0.922 52 H 0.058 0.942 53 H 0.078 0.922 54 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.116 -5.053 -3.650 22.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.085 4.085 4 C -0.155 4.155 5 C -0.214 4.214 6 C -0.172 4.172 7 C 0.314 3.686 8 O -0.449 6.449 9 N -0.347 5.347 10 C -0.055 4.055 11 C -0.028 4.028 12 H 0.121 0.879 13 N -0.296 5.296 14 C -0.068 4.068 15 C 0.225 3.775 16 O -0.511 6.511 17 N -0.210 5.210 18 C -0.462 4.462 19 H 0.097 0.903 20 C -0.213 4.213 21 N -0.560 5.560 22 Si 0.814 3.186 23 H -0.199 1.199 24 H -0.196 1.196 25 H -0.197 1.197 26 C -0.148 4.148 27 C 0.030 3.970 28 H 0.084 0.916 29 C -0.212 4.212 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.122 0.878 42 H 0.125 0.875 43 H 0.093 0.907 44 H 0.111 0.889 45 H 0.169 0.831 46 H 0.124 0.876 47 H 0.092 0.908 48 H 0.231 0.769 49 H 0.086 0.914 50 H 0.113 0.887 51 H 0.097 0.903 52 H 0.077 0.923 53 H 0.097 0.903 54 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -21.847 -5.647 -4.565 23.022 hybrid contribution 0.222 0.356 1.069 1.148 sum -21.624 -5.290 -3.496 22.535 Atomic orbital electron populations 1.21758 0.95418 1.01536 1.01739 1.21636 0.96545 0.96340 1.01612 1.20926 0.92607 0.96565 0.98387 1.21613 1.01889 0.95604 0.96359 1.21856 1.01687 0.96007 1.01843 1.21863 0.98343 1.03845 0.93169 1.20900 0.80268 0.77519 0.89899 1.90644 1.49497 1.49450 1.55259 1.48615 1.05714 1.63542 1.16778 1.23262 0.86945 1.00582 0.94685 1.22791 0.85211 1.00505 0.94300 0.87913 1.60095 1.25820 1.05265 1.38418 1.21608 0.92419 0.93816 0.98952 1.20916 0.89727 0.84203 0.82661 1.90505 1.66733 1.29431 1.64382 1.41924 1.17185 1.12708 1.49221 1.19607 0.94982 0.98773 1.32846 0.90338 1.26000 1.03212 0.94327 0.97722 1.69658 1.40188 1.02303 1.43885 0.85028 0.77459 0.77736 0.78371 1.19872 1.19648 1.19670 1.22685 0.92262 0.99540 1.00302 1.21619 0.93598 0.98126 0.83688 0.91555 1.22064 1.00990 1.00085 0.98106 0.91568 0.93641 0.92857 0.92726 0.91996 0.92187 0.90999 0.91226 0.93126 0.92113 0.92382 0.87764 0.87482 0.90657 0.88915 0.83080 0.87633 0.90768 0.76907 0.91351 0.88687 0.90329 0.92331 0.90289 0.93326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.67 71.98 0.70 -1.57 16 2 C -0.12 -2.18 5.20 30.59 0.16 -2.02 16 3 C -0.07 -1.06 1.49 -10.79 -0.02 -1.08 16 4 C -0.12 -1.46 5.27 30.59 0.16 -1.30 16 5 C -0.16 -1.89 9.55 71.98 0.69 -1.21 16 6 C -0.13 -2.08 4.14 29.85 0.12 -1.95 16 7 C 0.52 11.30 7.36 87.66 0.65 11.95 16 8 O -0.57 -15.92 12.90 -3.05 -0.04 -15.96 16 9 N -0.61 -11.87 3.08 -787.87 -2.43 -14.30 16 10 C 0.07 1.17 6.30 86.86 0.55 1.72 16 11 C 0.08 1.58 3.34 46.31 0.15 1.74 16 12 H 0.10 1.84 7.87 -2.39 -0.02 1.82 16 13 N -0.66 -17.67 6.02 -488.38 -2.94 -20.61 16 14 C 0.06 1.90 6.05 85.56 0.52 2.42 16 15 C 0.44 19.40 7.82 87.66 0.69 20.09 16 16 O -0.62 -32.87 15.78 -3.08 -0.05 -32.92 16 17 N -0.57 -27.96 5.29 -306.98 -1.62 -29.58 16 18 C -0.33 -18.29 9.68 84.04 0.81 -17.48 16 19 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 20 C -0.01 -0.66 5.50 84.92 0.47 -0.20 16 21 N -0.92 -48.25 13.05 21.66 0.28 -47.97 16 22 Si 0.99 41.95 29.55 68.60 2.03 43.97 16 23 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 24 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 25 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 26 C -0.11 -1.99 6.20 31.82 0.20 -1.79 16 27 C 0.13 2.56 3.50 45.38 0.16 2.72 16 28 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 29 C -0.15 -2.89 9.06 71.98 0.65 -2.24 16 30 H 0.07 0.83 6.46 -2.39 -0.02 0.82 16 31 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.05 0.77 8.14 -2.39 -0.02 0.76 16 33 H 0.05 1.26 5.96 -2.39 -0.01 1.25 16 34 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 35 H 0.06 1.19 7.93 -2.39 -0.02 1.17 16 36 H 0.07 0.85 6.33 -2.39 -0.02 0.83 16 37 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.06 0.67 6.68 -2.38 -0.02 0.66 16 41 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.11 1.39 5.92 -2.39 -0.01 1.38 16 43 H 0.08 1.26 7.77 -2.39 -0.02 1.24 16 44 H 0.09 1.28 7.37 -2.39 -0.02 1.26 16 45 H 0.35 9.79 7.94 -89.70 -0.71 9.08 16 46 H 0.11 2.81 8.09 -2.39 -0.02 2.79 16 47 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 48 H 0.40 18.27 7.90 -92.71 -0.73 17.54 16 49 H 0.28 13.69 8.31 -92.71 -0.77 12.92 16 50 H 0.09 1.61 7.83 -2.39 -0.02 1.59 16 51 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 52 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 53 H 0.08 1.22 8.14 -2.39 -0.02 1.21 16 54 H 0.05 1.13 6.74 -2.38 -0.02 1.11 16 Total: -1.00 -67.71 421.08 1.33 -66.38 By element: Atomic # 1 Polarization: 41.76 SS G_CDS: -0.55 Total: 41.20 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 6.65 Total: 9.78 kcal Atomic # 7 Polarization: -105.75 SS G_CDS: -6.71 Total: -112.46 kcal Atomic # 8 Polarization: -48.79 SS G_CDS: -0.09 Total: -48.88 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Total: -67.71 1.33 -66.38 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676767753.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.018 kcal (2) G-P(sol) polarization free energy of solvation -67.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds