Wall clock time and date at job start Sat Apr 11 2020 05:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52994 * 109.47229 * 2 1 4 4 C 1.53008 * 109.47171 * 64.99901 * 3 2 1 5 5 C 1.52998 * 109.47015 * 185.32145 * 4 3 2 6 6 C 1.53005 * 109.47452 * 184.99673 * 3 2 1 7 7 C 1.50697 * 109.46627 * 67.18134 * 6 3 2 8 8 O 1.21282 * 120.00359 * 356.31324 * 7 6 3 9 9 N 1.34781 * 119.99746 * 176.31754 * 7 6 3 10 10 C 1.47423 * 125.64807 * 0.03681 * 9 7 6 11 11 C 1.55120 * 104.94543 * 155.96500 * 10 9 7 12 12 H 1.08999 * 110.93754 * 278.78846 * 11 10 9 13 13 N 1.46900 * 111.16584 * 154.86804 * 11 10 9 14 14 C 1.46899 * 110.99808 * 92.83168 * 13 11 10 15 15 C 1.50698 * 109.47188 * 180.02562 * 14 13 11 16 16 O 1.21290 * 120.00082 * 359.97438 * 15 14 13 17 17 N 1.34772 * 120.00059 * 179.97438 * 15 14 13 18 18 C 1.37102 * 120.00213 * 179.97438 * 17 15 14 19 19 H 1.08010 * 119.99494 * 0.02562 * 18 17 15 20 20 C 1.38946 * 120.00439 * 179.97438 * 18 17 15 21 21 N 1.31411 * 120.00221 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 119.99882 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47401 * 89.99477 * 22 20 18 24 24 H 1.48496 * 109.46987 * 209.99950 * 22 20 18 25 25 H 1.48504 * 109.46847 * 329.99530 * 22 20 18 26 26 C 1.55156 * 101.48302 * 36.77932 * 11 10 9 27 27 C 1.47018 * 125.64912 * 180.02562 * 9 7 6 28 28 H 1.08994 * 110.01547 * 61.59842 * 27 9 7 29 29 C 1.53001 * 109.88100 * 300.50494 * 27 9 7 30 30 H 1.08994 * 109.47542 * 299.99698 * 1 2 3 31 31 H 1.09000 * 109.47233 * 60.00492 * 1 2 3 32 32 H 1.09004 * 109.47212 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47371 * 239.99595 * 2 1 3 34 34 H 1.09008 * 109.47031 * 120.00158 * 2 1 3 35 35 H 1.08996 * 109.47296 * 305.00062 * 3 2 1 36 36 H 1.09006 * 109.46664 * 305.32427 * 4 3 2 37 37 H 1.08997 * 109.47139 * 65.32210 * 4 3 2 38 38 H 1.08991 * 109.47263 * 294.74272 * 5 4 3 39 39 H 1.09001 * 109.47081 * 54.75015 * 5 4 3 40 40 H 1.09006 * 109.46533 * 174.74109 * 5 4 3 41 41 H 1.08997 * 109.47029 * 307.18262 * 6 3 2 42 42 H 1.09004 * 109.47107 * 187.18165 * 6 3 2 43 43 H 1.09001 * 110.36827 * 274.67882 * 10 9 7 44 44 H 1.09000 * 110.36602 * 36.88763 * 10 9 7 45 45 H 1.00903 * 111.00045 * 328.88003 * 13 11 10 46 46 H 1.09009 * 109.47257 * 299.99980 * 14 13 11 47 47 H 1.09000 * 109.47292 * 60.00215 * 14 13 11 48 48 H 0.96996 * 120.00722 * 0.02562 * 17 15 14 49 49 H 0.96997 * 120.00251 * 179.97438 * 21 20 18 50 50 H 1.09000 * 110.71814 * 206.27125 * 26 11 10 51 51 H 1.09000 * 110.72529 * 83.17397 * 26 11 10 52 52 H 1.08996 * 109.47210 * 302.19610 * 29 27 9 53 53 H 1.09001 * 109.46902 * 62.19559 * 29 27 9 54 54 H 1.09003 * 109.47480 * 182.19285 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 1.6351 2.1265 1.3074 5 6 2.0281 3.6042 1.2527 6 6 3.5648 1.4443 -0.1256 7 6 3.9571 0.9322 -1.4875 8 8 3.1056 0.5358 -2.2549 9 7 5.2544 0.9145 -1.8528 10 6 6.3869 1.3636 -1.0228 11 6 7.6178 0.6009 -1.5790 12 1 7.6616 -0.4122 -1.1791 13 7 8.8631 1.3288 -1.3007 14 6 9.4689 0.8737 -0.0422 15 6 10.7409 1.6416 0.2095 16 8 11.1070 2.4847 -0.5818 17 7 11.4716 1.3915 1.3140 18 6 12.6291 2.0897 1.5428 19 1 12.9551 2.8405 0.8380 20 6 13.3823 1.8323 2.6817 21 7 14.4915 2.5019 2.9012 22 14 12.8181 0.5343 3.9008 23 1 13.3937 -0.7818 3.5245 24 1 13.2762 0.9035 5.2642 25 1 11.3355 0.4496 3.8828 26 6 7.3105 0.5857 -3.0997 27 6 5.7744 0.4440 -3.1450 28 1 5.3695 1.0522 -3.9538 29 6 5.3934 -1.0226 -3.3563 30 1 -0.3634 0.5137 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.6053 1.9815 -0.8418 36 1 0.5568 2.0420 1.4429 37 1 2.1451 1.6456 2.1421 38 1 3.1138 3.6901 1.2111 39 1 1.5929 4.0633 0.3650 40 1 1.6572 4.1119 2.1432 41 1 3.9934 0.8002 0.6421 42 1 3.9387 2.4602 0.0021 43 1 6.5313 2.4389 -1.1277 44 1 6.2174 1.1047 0.0224 45 1 8.7039 2.3251 -1.2859 46 1 8.7728 1.0451 0.7790 47 1 9.6942 -0.1905 -0.1114 48 1 11.1791 0.7170 1.9467 49 1 15.0170 2.3225 3.6964 50 1 7.7908 -0.2657 -3.5817 51 1 7.6252 1.5192 -3.5662 52 1 5.7859 -1.6220 -2.5348 53 1 4.3077 -1.1152 -3.3871 54 1 5.8149 -1.3757 -4.2974 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676767755.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:21 Heat of formation + Delta-G solvation = -109.884198 kcal Electronic energy + Delta-G solvation = -30175.407571 eV Core-core repulsion = 26145.399038 eV Total energy + Delta-G solvation = -4030.008533 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.46585 -40.28924 -39.28685 -37.57523 -36.22328 -35.58084 -33.71856 -33.24930 -32.55806 -31.05786 -30.42838 -27.99942 -26.77640 -26.13252 -25.43100 -23.56519 -23.23017 -21.80537 -21.26104 -20.68787 -20.25674 -19.95525 -18.23364 -17.69181 -17.33974 -16.90559 -16.66989 -16.35361 -16.04085 -15.56564 -15.52247 -15.27519 -14.94350 -14.84704 -14.67987 -14.46619 -14.32589 -14.19548 -14.11649 -13.94854 -13.62470 -13.53409 -13.34004 -13.08830 -12.99693 -12.86178 -12.80229 -12.70518 -12.41113 -12.37686 -12.20999 -12.01348 -11.98163 -11.91730 -11.59423 -11.48494 -11.46234 -11.36776 -11.29018 -10.58633 -10.40366 -10.22058 -9.70468 -9.31091 -8.38625 -5.99554 1.32285 1.38620 1.47157 1.64931 1.93217 1.99982 2.25702 2.73136 3.18053 3.28886 3.50594 3.65958 3.78298 3.84390 3.88175 4.04217 4.11088 4.17377 4.20184 4.30368 4.38165 4.39894 4.44663 4.46858 4.52507 4.58728 4.62486 4.63567 4.69139 4.71281 4.79618 4.80888 4.94311 4.95200 4.97767 5.08409 5.11511 5.13136 5.14446 5.26053 5.29793 5.32827 5.44586 5.47247 5.54899 5.55503 5.56489 5.93307 6.06168 6.35065 6.53946 6.62354 6.91434 7.19450 7.43241 8.00161 8.78982 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012077 B = 0.002308 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.814175 B =12126.412741 C =13474.027043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.067 4.067 4 C -0.117 4.117 5 C -0.157 4.157 6 C -0.132 4.132 7 C 0.523 3.477 8 O -0.570 6.570 9 N -0.612 5.612 10 C 0.070 3.930 11 C 0.084 3.916 12 H 0.108 0.892 13 N -0.668 5.668 14 C 0.061 3.939 15 C 0.448 3.552 16 O -0.615 6.615 17 N -0.591 5.591 18 C -0.327 4.327 19 H 0.054 0.946 20 C -0.018 4.018 21 N -0.936 5.936 22 Si 0.965 3.035 23 H -0.259 1.259 24 H -0.278 1.278 25 H -0.226 1.226 26 C -0.111 4.111 27 C 0.133 3.867 28 H 0.063 0.937 29 C -0.154 4.154 30 H 0.065 0.935 31 H 0.043 0.957 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.047 0.953 40 H 0.060 0.940 41 H 0.110 0.890 42 H 0.105 0.895 43 H 0.073 0.927 44 H 0.097 0.903 45 H 0.349 0.651 46 H 0.085 0.915 47 H 0.117 0.883 48 H 0.390 0.610 49 H 0.278 0.722 50 H 0.094 0.906 51 H 0.075 0.925 52 H 0.060 0.940 53 H 0.047 0.953 54 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.057 -8.392 -2.017 29.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.086 4.086 4 C -0.154 4.154 5 C -0.214 4.214 6 C -0.172 4.172 7 C 0.314 3.686 8 O -0.449 6.449 9 N -0.347 5.347 10 C -0.055 4.055 11 C -0.026 4.026 12 H 0.126 0.874 13 N -0.300 5.300 14 C -0.071 4.071 15 C 0.236 3.764 16 O -0.500 6.500 17 N -0.233 5.233 18 C -0.456 4.456 19 H 0.073 0.927 20 C -0.216 4.216 21 N -0.577 5.577 22 Si 0.785 3.215 23 H -0.183 1.183 24 H -0.203 1.203 25 H -0.149 1.149 26 C -0.150 4.150 27 C 0.030 3.970 28 H 0.081 0.919 29 C -0.212 4.212 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.128 0.872 42 H 0.123 0.877 43 H 0.092 0.908 44 H 0.115 0.885 45 H 0.169 0.831 46 H 0.103 0.897 47 H 0.135 0.865 48 H 0.226 0.774 49 H 0.088 0.912 50 H 0.113 0.887 51 H 0.094 0.906 52 H 0.079 0.921 53 H 0.066 0.934 54 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -27.763 -8.386 -3.202 29.178 hybrid contribution -0.046 0.281 1.061 1.098 sum -27.809 -8.105 -2.141 29.045 Atomic orbital electron populations 1.21764 0.95596 1.01529 1.01654 1.21630 0.96395 0.96249 1.01762 1.20930 0.92731 0.96632 0.98283 1.21614 1.01877 0.95505 0.96432 1.21857 1.01682 0.96132 1.01751 1.21859 0.98241 1.03831 0.93221 1.20921 0.80251 0.77463 0.89971 1.90647 1.49567 1.49388 1.55334 1.48607 1.05766 1.63238 1.17044 1.23290 0.86183 0.99538 0.96459 1.22810 0.85497 0.98349 0.95992 0.87409 1.60087 1.25491 1.10475 1.33973 1.21729 0.92342 1.00403 0.92665 1.21032 0.87661 0.85987 0.81706 1.90559 1.73453 1.38131 1.47814 1.42029 1.22104 1.36922 1.22233 1.18993 0.99865 1.18910 1.07839 0.92743 1.26142 0.95335 1.00561 0.99570 1.69809 1.15894 1.42945 1.29027 0.85362 0.80799 0.78005 0.77327 1.18348 1.20336 1.14948 1.22674 0.91962 1.04049 0.96287 1.21584 0.93958 0.95769 0.85731 0.91864 1.22060 1.01581 0.94897 1.02648 0.91598 0.93814 0.92826 0.92621 0.91745 0.92495 0.91098 0.90972 0.92352 0.93339 0.92110 0.87227 0.87731 0.90839 0.88472 0.83059 0.89735 0.86536 0.77408 0.91234 0.88732 0.90637 0.92102 0.93387 0.90428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.67 71.98 0.70 -1.44 16 2 C -0.12 -1.98 5.20 30.59 0.16 -1.82 16 3 C -0.07 -0.99 1.49 -10.79 -0.02 -1.01 16 4 C -0.12 -1.31 5.27 30.60 0.16 -1.15 16 5 C -0.16 -1.75 9.55 71.98 0.69 -1.06 16 6 C -0.13 -1.84 4.01 29.85 0.12 -1.72 16 7 C 0.52 10.52 7.37 87.66 0.65 11.17 16 8 O -0.57 -15.32 12.90 -3.04 -0.04 -15.36 16 9 N -0.61 -10.87 3.08 -787.64 -2.43 -13.30 16 10 C 0.07 1.01 6.31 86.93 0.55 1.56 16 11 C 0.08 1.40 3.39 46.38 0.16 1.56 16 12 H 0.11 1.54 7.83 -2.39 -0.02 1.52 16 13 N -0.67 -16.14 6.04 -488.03 -2.95 -19.09 16 14 C 0.06 1.54 6.03 85.56 0.52 2.06 16 15 C 0.45 18.64 7.82 87.66 0.69 19.33 16 16 O -0.62 -32.32 15.78 -3.06 -0.05 -32.37 16 17 N -0.59 -26.20 5.09 -306.99 -1.56 -27.76 16 18 C -0.33 -18.54 10.16 84.04 0.85 -17.68 16 19 H 0.05 3.71 7.39 -2.91 -0.02 3.69 16 20 C -0.02 -0.96 5.50 84.93 0.47 -0.49 16 21 N -0.94 -55.52 13.96 21.66 0.30 -55.22 16 22 Si 0.97 37.21 27.74 68.60 1.90 39.11 16 23 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16 24 H -0.28 -10.78 7.11 99.48 0.71 -10.07 16 25 H -0.23 -7.08 6.52 99.48 0.65 -6.43 16 26 C -0.11 -1.87 6.18 31.78 0.20 -1.68 16 27 C 0.13 2.40 3.50 45.34 0.16 2.56 16 28 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 29 C -0.15 -2.67 9.05 71.98 0.65 -2.02 16 30 H 0.07 0.77 6.46 -2.39 -0.02 0.75 16 31 H 0.04 0.70 8.14 -2.39 -0.02 0.69 16 32 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 33 H 0.06 1.20 5.95 -2.39 -0.01 1.19 16 34 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.06 1.09 7.93 -2.39 -0.02 1.07 16 36 H 0.07 0.76 6.33 -2.38 -0.02 0.75 16 37 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.06 0.62 6.68 -2.39 -0.02 0.60 16 39 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 41 H 0.11 1.16 8.00 -2.39 -0.02 1.14 16 42 H 0.10 1.24 6.38 -2.38 -0.02 1.22 16 43 H 0.07 1.10 7.75 -2.39 -0.02 1.08 16 44 H 0.10 1.03 7.58 -2.39 -0.02 1.02 16 45 H 0.35 9.12 7.90 -89.69 -0.71 8.42 16 46 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 47 H 0.12 2.44 8.09 -2.39 -0.02 2.42 16 48 H 0.39 14.02 5.76 -92.71 -0.53 13.48 16 49 H 0.28 15.09 8.31 -92.71 -0.77 14.32 16 50 H 0.09 1.47 7.83 -2.39 -0.02 1.46 16 51 H 0.07 1.41 8.14 -2.39 -0.02 1.40 16 52 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 53 H 0.05 1.06 6.76 -2.39 -0.02 1.04 16 54 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -77.03 418.30 1.46 -75.58 By element: Atomic # 1 Polarization: 40.66 SS G_CDS: -0.41 Total: 40.25 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: 6.69 Total: 8.16 kcal Atomic # 7 Polarization: -108.73 SS G_CDS: -6.64 Total: -115.37 kcal Atomic # 8 Polarization: -47.64 SS G_CDS: -0.09 Total: -47.73 kcal Atomic # 14 Polarization: 37.21 SS G_CDS: 1.90 Total: 39.11 kcal Total: -77.03 1.46 -75.58 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676767755.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.308 kcal (2) G-P(sol) polarization free energy of solvation -77.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds