Wall clock time and date at job start Sat Apr 11 2020 05:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21281 * 119.99775 * 2 1 4 4 N 1.34773 * 120.00433 * 180.27777 * 2 1 3 5 5 C 1.46494 * 120.00461 * 175.63322 * 4 2 1 6 6 C 1.53003 * 109.46601 * 56.49945 * 5 4 2 7 7 C 1.50702 * 109.47185 * 296.50511 * 5 4 2 8 8 O 1.21280 * 119.99789 * 143.95593 * 7 5 4 9 9 N 1.34773 * 119.99848 * 323.95211 * 7 5 4 10 10 C 1.47427 * 125.64639 * 5.40589 * 9 7 5 11 11 C 1.55135 * 104.71923 * 155.81610 * 10 9 7 12 12 H 1.09003 * 110.93910 * 155.28632 * 11 10 9 13 13 N 1.46499 * 111.19123 * 279.18458 * 11 10 9 14 14 C 1.36937 * 120.00457 * 267.18993 * 13 11 10 15 15 H 1.08003 * 119.99614 * 0.02562 * 14 13 11 16 16 C 1.38803 * 120.00074 * 179.97438 * 14 13 11 17 17 N 1.31619 * 120.00505 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99968 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47056 * 90.00198 * 18 16 14 20 20 H 1.48501 * 109.46984 * 210.00120 * 18 16 14 21 21 H 1.48505 * 109.46776 * 329.99932 * 18 16 14 22 22 C 1.55154 * 101.48844 * 37.29284 * 11 10 9 23 23 C 1.52999 * 110.72260 * 205.97039 * 22 11 10 24 24 C 1.52999 * 110.87440 * 82.76500 * 22 11 10 25 25 C 1.47021 * 125.64894 * 185.70795 * 9 7 5 26 26 C 1.52993 * 109.47266 * 176.49948 * 5 4 2 27 27 C 1.52993 * 109.47468 * 299.79300 * 26 5 4 28 28 C 1.53005 * 109.47073 * 59.79869 * 26 5 4 29 29 H 1.08998 * 109.47224 * 89.99959 * 1 2 3 30 30 H 1.08999 * 109.46384 * 209.99963 * 1 2 3 31 31 H 1.09000 * 109.47184 * 329.99739 * 1 2 3 32 32 H 0.97005 * 119.99361 * 355.64063 * 4 2 1 33 33 H 1.09001 * 109.46949 * 60.00371 * 6 5 4 34 34 H 1.09006 * 109.46735 * 179.97438 * 6 5 4 35 35 H 1.08995 * 109.47613 * 300.00082 * 6 5 4 36 36 H 1.09000 * 110.36190 * 274.73979 * 10 9 7 37 37 H 1.08999 * 110.37077 * 37.06789 * 10 9 7 38 38 H 0.97006 * 119.99979 * 87.19157 * 13 11 10 39 39 H 0.96992 * 120.00472 * 179.97438 * 17 16 14 40 40 H 1.08999 * 109.47498 * 174.97658 * 23 22 11 41 41 H 1.09003 * 109.46717 * 294.97769 * 23 22 11 42 42 H 1.09006 * 109.47066 * 54.97465 * 23 22 11 43 43 H 1.08998 * 109.47053 * 304.94028 * 24 22 11 44 44 H 1.09004 * 109.46685 * 64.93696 * 24 22 11 45 45 H 1.09001 * 109.47512 * 184.93410 * 24 22 11 46 46 H 1.09006 * 109.88264 * 300.44140 * 25 9 7 47 47 H 1.09003 * 109.88055 * 61.60564 * 25 9 7 48 48 H 1.09008 * 109.47213 * 179.79342 * 26 5 4 49 49 H 1.09007 * 109.47328 * 63.92198 * 27 26 5 50 50 H 1.09003 * 109.47491 * 183.92270 * 27 26 5 51 51 H 1.08996 * 109.47374 * 303.92195 * 27 26 5 52 52 H 1.08996 * 109.47422 * 59.99333 * 28 26 5 53 53 H 1.09001 * 109.46943 * 179.97438 * 28 26 5 54 54 H 1.09004 * 109.46418 * 299.99374 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1810 -1.1671 -0.0057 5 6 3.6428 -1.1685 -0.1023 6 6 4.2298 -0.3332 1.0373 7 6 4.0594 -0.5775 -1.4245 8 8 5.0603 0.1036 -1.4958 9 7 3.3197 -0.8059 -2.5277 10 6 2.0283 -1.5161 -2.5644 11 6 1.3234 -0.9866 -3.8408 12 1 0.5973 -1.7094 -4.2131 13 7 0.6897 0.3114 -3.5961 14 6 -0.6236 0.3709 -3.2128 15 1 -1.1922 -0.5392 -3.0906 16 6 -1.2237 1.6007 -2.9804 17 7 -0.5307 2.7098 -3.1289 18 14 -3.0151 1.6818 -2.4569 19 1 -3.1001 1.6396 -0.9750 20 1 -3.6186 2.9452 -2.9516 21 1 -3.7505 0.5249 -3.0282 22 6 2.5197 -0.8460 -4.8187 23 6 2.2288 0.2163 -5.8807 24 6 2.8484 -2.1886 -5.4747 25 6 3.6700 -0.3937 -3.8947 26 6 4.1593 -2.6050 -0.0002 27 6 3.7408 -3.2032 1.3443 28 6 3.5681 -3.4414 -1.1368 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3632 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.6980 -2.0063 0.0541 33 1 3.9285 -0.7606 1.9937 34 1 5.3175 -0.3346 0.9657 35 1 3.8619 0.6902 0.9647 36 1 2.1889 -2.5919 -2.6355 37 1 1.4387 -1.2774 -1.6792 38 1 1.2005 1.1288 -3.7055 39 1 -0.9502 3.5691 -2.9668 40 1 3.1133 0.3620 -6.5008 41 1 1.3976 -0.1119 -6.5048 42 1 1.9682 1.1558 -5.3931 43 1 3.0226 -2.9374 -4.7021 44 1 2.0130 -2.5008 -6.1015 45 1 3.7434 -2.0840 -6.0879 46 1 3.7768 0.6902 -3.9392 47 1 4.6005 -0.8728 -4.1994 48 1 5.2467 -2.6063 -0.0758 49 1 2.6536 -3.2661 1.3914 50 1 4.1673 -4.2011 1.4466 51 1 4.1033 -2.5686 2.1529 52 1 3.8662 -3.0153 -2.0947 53 1 3.9365 -4.4648 -1.0644 54 1 2.4807 -3.4401 -1.0612 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677042515.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:45 Heat of formation + Delta-G solvation = -57.508499 kcal Electronic energy + Delta-G solvation = -34651.897764 eV Core-core repulsion = 30624.160411 eV Total energy + Delta-G solvation = -4027.737352 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.45767 -40.30669 -39.35643 -37.77177 -35.65440 -34.64477 -34.03645 -32.50008 -31.84118 -29.76889 -29.36035 -28.59463 -27.93228 -27.19302 -25.78049 -24.87888 -22.93701 -21.89974 -21.71652 -20.28631 -19.76942 -18.98655 -18.19567 -17.99466 -17.32114 -16.88467 -16.38164 -15.95869 -15.85417 -15.64133 -15.39079 -15.30322 -14.92759 -14.67870 -14.43729 -14.34662 -14.10001 -13.86510 -13.61917 -13.53232 -13.35316 -13.30871 -13.22475 -13.04733 -12.86345 -12.76075 -12.73300 -12.66167 -12.58503 -12.53452 -12.08979 -12.03808 -12.00802 -11.82331 -11.79780 -11.64269 -11.36260 -11.27268 -11.00860 -10.78034 -10.61872 -9.86189 -9.46298 -8.83155 -7.82149 -5.08375 1.51232 1.52435 1.53441 1.60806 1.77256 2.08431 2.31885 2.62136 3.40860 3.49327 3.57967 3.66893 3.86931 3.91490 3.94024 4.05432 4.12525 4.18643 4.38303 4.41126 4.50308 4.51512 4.53741 4.60824 4.66848 4.75734 4.77872 4.80778 4.82523 4.86401 4.90298 4.95113 4.98083 5.02710 5.06183 5.13059 5.14849 5.16861 5.27428 5.32666 5.35899 5.39111 5.41642 5.46344 5.50179 5.56060 5.59761 5.66740 6.34974 6.57842 6.68332 7.19348 7.36974 7.42652 8.19800 8.45171 9.41156 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010854 B = 0.006047 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.105250 B = 4629.103685 C = 5977.424747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.523 3.477 3 O -0.580 6.580 4 N -0.704 5.704 5 C 0.177 3.823 6 C -0.150 4.150 7 C 0.521 3.479 8 O -0.599 6.599 9 N -0.589 5.589 10 C 0.042 3.958 11 C 0.164 3.836 12 H 0.089 0.911 13 N -0.718 5.718 14 C -0.220 4.220 15 H 0.092 0.908 16 C -0.062 4.062 17 N -0.964 5.964 18 Si 0.947 3.053 19 H -0.284 1.284 20 H -0.314 1.314 21 H -0.260 1.260 22 C -0.077 4.077 23 C -0.119 4.119 24 C -0.121 4.121 25 C 0.119 3.881 26 C -0.085 4.085 27 C -0.143 4.143 28 C -0.161 4.161 29 H 0.119 0.881 30 H 0.115 0.885 31 H 0.064 0.936 32 H 0.419 0.581 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.044 0.956 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.366 0.634 39 H 0.242 0.758 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.027 0.973 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.019 0.981 47 H 0.069 0.931 48 H 0.081 0.919 49 H 0.070 0.930 50 H 0.082 0.918 51 H 0.059 0.941 52 H 0.049 0.951 53 H 0.086 0.914 54 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.913 -21.136 4.216 22.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.313 3.687 3 O -0.458 6.458 4 N -0.363 5.363 5 C 0.087 3.913 6 C -0.208 4.208 7 C 0.310 3.690 8 O -0.480 6.480 9 N -0.319 5.319 10 C -0.083 4.083 11 C 0.054 3.946 12 H 0.107 0.893 13 N -0.355 5.355 14 C -0.351 4.351 15 H 0.110 0.890 16 C -0.255 4.255 17 N -0.614 5.614 18 Si 0.777 3.223 19 H -0.211 1.211 20 H -0.243 1.243 21 H -0.184 1.184 22 C -0.079 4.079 23 C -0.177 4.177 24 C -0.179 4.179 25 C -0.004 4.004 26 C -0.104 4.104 27 C -0.200 4.200 28 C -0.218 4.218 29 H 0.137 0.863 30 H 0.134 0.866 31 H 0.083 0.917 32 H 0.260 0.740 33 H 0.110 0.890 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.121 0.879 37 H 0.113 0.887 38 H 0.198 0.802 39 H 0.051 0.949 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.047 0.953 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.082 0.918 46 H 0.037 0.963 47 H 0.087 0.913 48 H 0.100 0.900 49 H 0.089 0.911 50 H 0.101 0.899 51 H 0.078 0.922 52 H 0.068 0.932 53 H 0.105 0.895 54 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.682 -20.080 4.265 21.300 hybrid contribution -0.749 1.668 0.086 1.830 sum 4.932 -18.412 4.351 19.552 Atomic orbital electron populations 1.22260 0.89971 1.04541 1.07935 1.21073 0.91331 0.83013 0.73251 1.90702 1.71288 1.33718 1.50129 1.46200 1.05526 1.09105 1.75484 1.20464 0.81539 0.98553 0.90770 1.22083 1.00917 1.00370 0.97397 1.21068 0.82465 0.79495 0.85996 1.90610 1.29979 1.41040 1.86402 1.48267 1.22312 1.55324 1.06019 1.24429 0.83540 0.97106 1.03236 1.21763 0.92536 0.88422 0.91911 0.89279 1.42531 1.09484 1.02682 1.80833 1.19497 0.87852 0.92283 1.35475 0.89027 1.25354 1.00621 0.95457 1.04045 1.69854 1.37062 0.97166 1.57346 0.85547 0.81943 0.76590 0.78199 1.21085 1.24251 1.18433 1.21881 0.93887 0.97597 0.94543 1.21543 1.00995 0.97607 0.97580 1.21694 1.02223 0.93461 1.00488 1.21987 0.98460 0.97553 0.82423 1.21346 1.01141 0.88879 0.99058 1.21895 1.02560 1.01564 0.93964 1.22312 1.01926 1.00677 0.96924 0.86306 0.86649 0.91726 0.74041 0.88989 0.91781 0.93703 0.87879 0.88711 0.80157 0.94873 0.92218 0.91938 0.95344 0.91302 0.90957 0.91759 0.96283 0.91289 0.90019 0.91109 0.89872 0.92239 0.93166 0.89494 0.90589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.31 9.89 71.24 0.70 -5.60 16 2 C 0.52 19.21 5.84 87.66 0.51 19.73 16 3 O -0.58 -28.64 14.21 -3.03 -0.04 -28.68 16 4 N -0.70 -18.54 2.28 -426.34 -0.97 -19.51 16 5 C 0.18 5.06 0.34 2.86 0.00 5.06 16 6 C -0.15 -4.73 7.51 71.98 0.54 -4.19 16 7 C 0.52 19.94 5.09 87.66 0.45 20.39 16 8 O -0.60 -28.40 16.42 -3.03 -0.05 -28.45 16 9 N -0.59 -20.32 2.53 -811.33 -2.05 -22.37 16 10 C 0.04 1.19 4.02 86.93 0.35 1.54 16 11 C 0.16 5.39 2.96 46.46 0.14 5.53 16 12 H 0.09 2.64 7.99 -2.39 -0.02 2.63 16 13 N -0.72 -31.96 4.57 -316.01 -1.44 -33.40 16 14 C -0.22 -10.38 7.32 84.03 0.61 -9.76 16 15 H 0.09 3.90 7.83 -2.91 -0.02 3.88 16 16 C -0.06 -3.26 5.28 84.86 0.45 -2.81 16 17 N -0.96 -58.33 13.06 21.65 0.28 -58.05 16 18 Si 0.95 42.69 29.55 68.60 2.03 44.72 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 20 H -0.31 -15.28 7.11 99.48 0.71 -14.57 16 21 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 22 C -0.08 -2.29 0.80 -50.99 -0.04 -2.33 16 23 C -0.12 -3.92 8.15 71.98 0.59 -3.33 16 24 C -0.12 -2.47 8.44 71.98 0.61 -1.86 16 25 C 0.12 4.18 6.04 86.73 0.52 4.70 16 26 C -0.09 -1.59 2.25 -10.80 -0.02 -1.61 16 27 C -0.14 -1.76 8.72 71.98 0.63 -1.14 16 28 C -0.16 -2.42 7.03 71.98 0.51 -1.91 16 29 H 0.12 4.64 4.78 -2.39 -0.01 4.63 16 30 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.42 7.47 5.80 -92.70 -0.54 6.93 16 33 H 0.09 2.25 6.34 -2.39 -0.02 2.24 16 34 H 0.06 2.03 7.88 -2.38 -0.02 2.01 16 35 H 0.04 1.85 5.79 -2.39 -0.01 1.84 16 36 H 0.10 2.12 4.64 -2.39 -0.01 2.11 16 37 H 0.10 2.84 3.07 -2.39 -0.01 2.83 16 38 H 0.37 19.69 6.32 -92.70 -0.59 19.10 16 39 H 0.24 14.73 8.31 -92.71 -0.77 13.96 16 40 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.03 1.17 6.34 -2.38 -0.02 1.16 16 43 H 0.07 1.21 7.44 -2.39 -0.02 1.19 16 44 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.02 0.82 7.82 -2.38 -0.02 0.80 16 47 H 0.07 2.20 7.84 -2.39 -0.02 2.18 16 48 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 49 H 0.07 0.71 7.06 -2.38 -0.02 0.69 16 50 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 51 H 0.06 0.81 6.22 -2.39 -0.01 0.80 16 52 H 0.05 0.98 5.43 -2.39 -0.01 0.97 16 53 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 54 H 0.08 0.93 5.38 -2.38 -0.01 0.91 16 Total: -1.00 -78.67 389.18 4.10 -74.57 By element: Atomic # 1 Polarization: 48.97 SS G_CDS: -0.20 Total: 48.78 kcal Atomic # 6 Polarization: 15.85 SS G_CDS: 6.54 Total: 22.39 kcal Atomic # 7 Polarization: -129.15 SS G_CDS: -4.18 Total: -133.33 kcal Atomic # 8 Polarization: -57.04 SS G_CDS: -0.09 Total: -57.13 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -78.67 4.10 -74.57 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677042515.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.060 kcal (2) G-P(sol) polarization free energy of solvation -78.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds