Wall clock time and date at job start Sat Apr 11 2020 05:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21289 * 119.99417 * 2 1 4 4 N 1.34767 * 120.00315 * 179.97438 * 2 1 3 5 5 C 1.46502 * 120.00219 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47138 * 56.60186 * 5 4 2 7 7 C 1.50697 * 109.47297 * 176.60431 * 5 4 2 8 8 O 1.21281 * 119.99872 * 131.23030 * 7 5 4 9 9 N 1.34779 * 120.00217 * 311.23079 * 7 5 4 10 10 C 1.46501 * 119.99481 * 353.95046 * 9 7 5 11 11 C 1.46502 * 119.99923 * 173.94956 * 9 7 5 12 12 C 1.53038 * 109.45832 * 239.99801 * 11 9 7 13 13 C 1.53190 * 109.31011 * 178.61573 * 12 11 9 14 14 N 1.46917 * 108.89444 * 54.56699 * 13 12 11 15 15 C 1.36936 * 120.63400 * 126.45895 * 14 13 12 16 16 H 1.07999 * 120.00098 * 324.03601 * 15 14 13 17 17 C 1.38815 * 120.00336 * 144.03634 * 15 14 13 18 18 N 1.31616 * 119.99956 * 359.46396 * 17 15 14 19 19 Si 1.86802 * 120.00167 * 179.46297 * 17 15 14 20 20 H 1.48502 * 109.47179 * 359.97438 * 19 17 15 21 21 H 1.48490 * 109.46966 * 120.00082 * 19 17 15 22 22 H 1.48502 * 109.47203 * 240.00234 * 19 17 15 23 23 C 1.46963 * 118.71717 * 306.64108 * 14 13 12 24 24 C 1.53041 * 109.45660 * 119.93431 * 11 9 7 25 25 C 1.53004 * 109.46852 * 296.60654 * 5 4 2 26 26 C 1.53004 * 109.46934 * 176.70337 * 25 5 4 27 27 C 1.53000 * 109.46879 * 296.70093 * 25 5 4 28 28 H 1.09003 * 109.46845 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47399 * 299.99441 * 1 2 3 30 30 H 1.08996 * 109.47110 * 60.00348 * 1 2 3 31 31 H 0.96997 * 120.00388 * 0.02562 * 4 2 1 32 32 H 1.09001 * 109.47195 * 179.97438 * 6 5 4 33 33 H 1.08995 * 109.47036 * 300.00170 * 6 5 4 34 34 H 1.09002 * 109.46704 * 60.00030 * 6 5 4 35 35 H 1.09000 * 109.46919 * 274.87292 * 10 9 7 36 36 H 1.08994 * 109.47177 * 34.87950 * 10 9 7 37 37 H 1.09000 * 109.46502 * 154.88064 * 10 9 7 38 38 H 1.08998 * 109.46079 * 359.97048 * 11 9 7 39 39 H 1.09005 * 109.49479 * 58.66493 * 12 11 9 40 40 H 1.08999 * 109.50047 * 298.57042 * 12 11 9 41 41 H 1.09008 * 109.58370 * 174.42282 * 13 12 11 42 42 H 1.08996 * 109.59049 * 294.70359 * 13 12 11 43 43 H 0.96994 * 120.00511 * 180.02562 * 18 17 15 44 44 H 1.09000 * 109.46518 * 293.57511 * 23 14 13 45 45 H 1.08995 * 109.71468 * 173.28737 * 23 14 13 46 46 H 1.09003 * 109.49624 * 301.33162 * 24 11 9 47 47 H 1.09001 * 109.49979 * 61.39799 * 24 11 9 48 48 H 1.08998 * 109.47436 * 56.69946 * 25 5 4 49 49 H 1.09004 * 109.46856 * 185.78383 * 26 25 5 50 50 H 1.09001 * 109.47399 * 305.78609 * 26 25 5 51 51 H 1.08999 * 109.47009 * 65.78473 * 26 25 5 52 52 H 1.09001 * 109.47093 * 64.79386 * 27 25 5 53 53 H 1.09009 * 109.46977 * 184.78744 * 27 25 5 54 54 H 1.08996 * 109.47501 * 304.78828 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6459 -1.1671 0.0011 6 6 4.1555 -0.3727 1.2054 7 6 4.1483 -2.5853 0.0858 8 8 5.0034 -2.9726 -0.6822 9 7 3.6473 -3.4234 1.0148 10 6 2.7134 -2.9219 2.0261 11 6 4.0367 -4.8357 1.0134 12 6 2.7921 -5.7075 0.8321 13 6 3.2070 -7.1817 0.7965 14 7 3.9859 -7.4861 2.0044 15 6 3.6319 -8.5286 2.8186 16 1 2.5890 -8.7618 2.9748 17 6 4.6134 -9.2857 3.4434 18 7 5.8846 -9.0082 3.2448 19 14 4.1302 -10.6984 4.5660 20 1 2.6499 -10.8019 4.6222 21 1 4.6959 -11.9658 4.0382 22 1 4.6606 -10.4499 5.9307 23 6 5.1498 -6.6476 2.3240 24 6 4.7131 -5.1793 2.3425 25 6 4.1564 -0.5213 -1.2887 26 6 5.6841 -0.4467 -1.2517 27 6 3.7157 -1.3617 -2.4888 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6960 -2.0072 0.0005 32 1 5.2455 -0.3731 1.2061 33 1 3.7921 0.6530 1.1441 34 1 3.7917 -0.8328 2.1242 35 1 3.2736 -2.5014 2.8612 36 1 2.0820 -2.1498 1.5865 37 1 2.0898 -3.7416 2.3829 38 1 4.7316 -5.0200 0.1941 39 1 2.2978 -5.4459 -0.1036 40 1 2.1077 -5.5422 1.6642 41 1 2.3174 -7.8111 0.7671 42 1 3.8161 -7.3686 -0.0879 43 1 6.5705 -9.5374 3.6810 44 1 5.9195 -6.7903 1.5655 45 1 5.5446 -6.9238 3.3017 46 1 5.5862 -4.5419 2.4819 47 1 4.0108 -5.0184 3.1605 48 1 3.7456 0.4843 -1.3788 49 1 6.0421 0.1045 -2.1213 50 1 6.0011 0.0637 -0.3422 51 1 6.0975 -1.4552 -1.2652 52 1 2.6285 -1.3447 -2.5647 53 1 4.1500 -0.9498 -3.3999 54 1 4.0547 -2.3892 -2.3570 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690030624.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:09 Heat of formation + Delta-G solvation = -52.120106 kcal Electronic energy + Delta-G solvation = -32656.466025 eV Core-core repulsion = 28628.962331 eV Total energy + Delta-G solvation = -4027.503694 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.45195 -40.40214 -39.21500 -37.11457 -36.85229 -34.73018 -33.96560 -32.18714 -31.64266 -31.08860 -29.87649 -28.15445 -27.81680 -27.04635 -25.38731 -23.83350 -23.79449 -22.52660 -21.29065 -20.44340 -20.01340 -18.77615 -18.58805 -17.84067 -17.21340 -16.86683 -16.38549 -16.28684 -16.09451 -15.66986 -15.33098 -15.33023 -15.14843 -14.87241 -14.79816 -14.32913 -14.29242 -14.09637 -13.98340 -13.72902 -13.42903 -13.25006 -13.19568 -13.08134 -12.93472 -12.86348 -12.74297 -12.65487 -12.61168 -12.51782 -12.16121 -12.09089 -11.92072 -11.89412 -11.84581 -11.77251 -11.47170 -11.30561 -11.00280 -10.56877 -10.29104 -10.01889 -9.57951 -8.57350 -7.87123 -5.44262 1.30392 1.47244 1.49060 1.59139 1.65857 1.86599 2.28209 2.50192 3.23476 3.30997 3.65023 3.69300 3.81581 3.92203 3.95873 4.07535 4.18293 4.24608 4.34769 4.38538 4.48474 4.51513 4.55877 4.56442 4.65913 4.68437 4.72563 4.75617 4.78605 4.81692 4.89173 4.94475 4.95074 5.00322 5.05671 5.07917 5.12855 5.15285 5.16604 5.22189 5.28430 5.33131 5.39944 5.49324 5.52871 5.64519 5.65661 5.74828 6.35830 6.44810 6.49721 7.07568 7.17197 7.23708 7.83604 8.39643 9.18746 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.020406 B = 0.002876 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.832848 B = 9731.747656 C =10250.818846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.512 3.488 3 O -0.574 6.574 4 N -0.712 5.712 5 C 0.177 3.823 6 C -0.168 4.168 7 C 0.513 3.487 8 O -0.551 6.551 9 N -0.598 5.598 10 C 0.047 3.953 11 C 0.156 3.844 12 C -0.121 4.121 13 C 0.143 3.857 14 N -0.609 5.609 15 C -0.263 4.263 16 H 0.070 0.930 17 C -0.046 4.046 18 N -0.937 5.937 19 Si 0.969 3.031 20 H -0.262 1.262 21 H -0.294 1.294 22 H -0.291 1.291 23 C 0.183 3.817 24 C -0.128 4.128 25 C -0.083 4.083 26 C -0.158 4.158 27 C -0.148 4.148 28 H 0.101 0.899 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.415 0.585 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.107 0.893 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.006 0.994 43 H 0.250 0.750 44 H -0.014 1.014 45 H 0.060 0.940 46 H 0.050 0.950 47 H 0.065 0.935 48 H 0.084 0.916 49 H 0.058 0.942 50 H 0.056 0.944 51 H 0.065 0.935 52 H 0.055 0.945 53 H 0.056 0.944 54 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.863 19.182 -5.619 23.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.302 3.698 3 O -0.453 6.453 4 N -0.370 5.370 5 C 0.087 3.913 6 C -0.226 4.226 7 C 0.301 3.699 8 O -0.428 6.428 9 N -0.329 5.329 10 C -0.095 4.095 11 C 0.052 3.948 12 C -0.160 4.160 13 C 0.017 3.983 14 N -0.333 5.333 15 C -0.393 4.393 16 H 0.088 0.912 17 C -0.242 4.242 18 N -0.583 5.583 19 Si 0.797 3.203 20 H -0.186 1.186 21 H -0.221 1.221 22 H -0.218 1.218 23 C 0.057 3.943 24 C -0.168 4.168 25 C -0.103 4.103 26 C -0.215 4.215 27 C -0.206 4.206 28 H 0.120 0.880 29 H 0.125 0.875 30 H 0.121 0.879 31 H 0.255 0.745 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.125 0.875 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.024 0.976 43 H 0.059 0.941 44 H 0.004 0.996 45 H 0.078 0.922 46 H 0.068 0.932 47 H 0.084 0.916 48 H 0.103 0.897 49 H 0.077 0.923 50 H 0.075 0.925 51 H 0.084 0.916 52 H 0.074 0.926 53 H 0.075 0.925 54 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.892 19.612 -5.953 23.696 hybrid contribution 0.536 -1.513 0.598 1.713 sum -11.355 18.099 -5.354 22.027 Atomic orbital electron populations 1.21921 0.88005 1.06353 1.06254 1.21534 0.92003 0.82408 0.73835 1.90668 1.71389 1.32615 1.50655 1.46505 1.05155 1.10083 1.75211 1.20399 0.81586 0.91163 0.98129 1.22376 1.01890 1.02239 0.96051 1.20826 0.81988 0.87106 0.80005 1.90621 1.32348 1.76851 1.43008 1.48110 1.45736 1.08662 1.30392 1.22594 0.93430 1.01834 0.91604 1.20822 0.96795 0.79376 0.97765 1.22177 0.96563 0.94938 1.02339 1.21018 0.94824 0.94428 0.88000 1.44234 1.31765 1.33162 1.24165 1.19529 0.91907 1.05872 1.21992 0.91210 1.26109 0.95362 1.00187 1.02543 1.70116 0.99813 1.41496 1.46841 0.85177 0.78317 0.79046 0.77745 1.18557 1.22119 1.21809 1.20515 0.87981 0.86956 0.98871 1.22288 0.99651 0.97704 0.97140 1.21206 0.96619 0.99675 0.92761 1.22121 0.94733 1.02989 1.01678 1.21928 1.00678 1.00705 0.97256 0.88031 0.87482 0.87941 0.74532 0.91577 0.89324 0.90591 0.92202 0.87514 0.89537 0.91514 0.90296 0.90558 0.91733 0.97629 0.94118 0.99622 0.92206 0.93165 0.91585 0.89731 0.92276 0.92535 0.91642 0.92563 0.92518 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.06 10.39 71.24 0.74 -0.32 16 2 C 0.51 7.74 7.35 87.66 0.64 8.38 16 3 O -0.57 -13.27 13.30 -3.06 -0.04 -13.31 16 4 N -0.71 -10.57 2.60 -426.32 -1.11 -11.68 16 5 C 0.18 3.73 0.12 2.86 0.00 3.73 16 6 C -0.17 -3.47 7.71 71.98 0.56 -2.92 16 7 C 0.51 13.55 5.80 87.66 0.51 14.06 16 8 O -0.55 -18.61 10.91 -3.03 -0.03 -18.65 16 9 N -0.60 -14.70 2.71 -822.45 -2.23 -16.93 16 10 C 0.05 0.81 7.74 127.77 0.99 1.80 16 11 C 0.16 5.00 2.47 45.02 0.11 5.11 16 12 C -0.12 -3.59 5.32 30.67 0.16 -3.42 16 13 C 0.14 5.66 6.51 86.36 0.56 6.22 16 14 N -0.61 -29.77 2.99 -699.03 -2.09 -31.86 16 15 C -0.26 -13.96 9.55 84.03 0.80 -13.16 16 16 H 0.07 3.55 7.83 -2.91 -0.02 3.53 16 17 C -0.05 -2.55 5.24 84.86 0.44 -2.10 16 18 N -0.94 -55.14 10.88 21.65 0.24 -54.90 16 19 Si 0.97 43.78 29.55 68.60 2.03 45.81 16 20 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 21 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 22 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 23 C 0.18 8.88 5.22 86.36 0.45 9.33 16 24 C -0.13 -4.73 5.34 30.67 0.16 -4.57 16 25 C -0.08 -1.92 2.14 -10.79 -0.02 -1.94 16 26 C -0.16 -3.87 8.59 71.98 0.62 -3.26 16 27 C -0.15 -3.39 8.73 71.98 0.63 -2.76 16 28 H 0.10 0.17 7.91 -2.39 -0.02 0.15 16 29 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.41 4.60 6.73 -92.71 -0.62 3.98 16 32 H 0.07 1.46 6.24 -2.39 -0.01 1.44 16 33 H 0.09 1.98 5.93 -2.39 -0.01 1.96 16 34 H 0.08 1.39 5.48 -2.39 -0.01 1.37 16 35 H 0.06 1.04 7.06 -2.39 -0.02 1.02 16 36 H 0.11 1.29 4.05 -2.39 -0.01 1.28 16 37 H 0.09 1.42 6.46 -2.39 -0.02 1.40 16 38 H 0.07 2.58 6.92 -2.39 -0.02 2.56 16 39 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 40 H 0.08 2.09 6.72 -2.39 -0.02 2.08 16 41 H 0.06 2.42 7.93 -2.38 -0.02 2.40 16 42 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 43 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 44 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 45 H 0.06 3.29 6.16 -2.39 -0.01 3.28 16 46 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.07 2.32 7.72 -2.39 -0.02 2.30 16 48 H 0.08 2.08 6.34 -2.39 -0.02 2.06 16 49 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 50 H 0.06 1.31 6.05 -2.39 -0.01 1.29 16 51 H 0.06 1.94 5.57 -2.39 -0.01 1.92 16 52 H 0.06 1.11 7.84 -2.39 -0.02 1.09 16 53 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 54 H 0.06 1.58 5.55 -2.39 -0.01 1.56 16 Total: -1.00 -70.32 390.42 4.41 -65.91 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 0.29 Total: 21.44 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: 7.36 Total: 14.17 kcal Atomic # 7 Polarization: -110.18 SS G_CDS: -5.19 Total: -115.37 kcal Atomic # 8 Polarization: -31.88 SS G_CDS: -0.07 Total: -31.96 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -70.32 4.41 -65.91 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690030624.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.791 kcal (2) G-P(sol) polarization free energy of solvation -70.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds