Wall clock time and date at job start Sat Apr 11 2020 05:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46648 * 2 1 4 4 C 1.52997 * 109.47412 * 119.99984 * 2 1 3 5 5 C 1.52997 * 109.47088 * 64.99916 * 4 2 1 6 6 C 1.50696 * 109.47327 * 180.02562 * 5 4 2 7 7 O 1.21283 * 120.00025 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00286 * 180.02562 * 6 5 4 9 9 C 1.46931 * 120.62785 * 359.97438 * 8 6 5 10 10 C 1.53194 * 108.77629 * 126.41058 * 9 8 6 11 11 C 1.53039 * 109.31026 * 54.63121 * 10 9 8 12 12 C 1.53037 * 109.54101 * 298.63204 * 11 10 9 13 13 H 1.08999 * 109.50017 * 301.41283 * 12 11 10 14 14 N 1.46902 * 109.49945 * 181.31934 * 12 11 10 15 15 C 1.46896 * 111.00261 * 184.12096 * 14 12 11 16 16 C 1.46900 * 111.00189 * 60.16013 * 14 12 11 17 17 C 1.50693 * 109.47415 * 190.00214 * 16 14 12 18 18 O 1.21293 * 120.00186 * 359.97438 * 17 16 14 19 19 N 1.34775 * 120.00398 * 180.02562 * 17 16 14 20 20 C 1.37092 * 120.00625 * 179.97438 * 19 17 16 21 21 H 1.08007 * 119.99626 * 359.97438 * 20 19 17 22 22 C 1.38944 * 120.00425 * 180.02562 * 20 19 17 23 23 N 1.31416 * 120.00462 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 119.99945 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47334 * 89.99925 * 24 22 20 26 26 H 1.48504 * 109.47204 * 210.00021 * 24 22 20 27 27 H 1.48498 * 109.46906 * 329.99878 * 24 22 20 28 28 C 1.46922 * 120.63168 * 179.97438 * 8 6 5 29 29 H 1.09001 * 109.46847 * 300.00007 * 1 2 3 30 30 H 1.08999 * 109.47117 * 59.99697 * 1 2 3 31 31 H 1.09000 * 109.46838 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47436 * 240.00462 * 2 1 3 33 33 H 1.09009 * 109.47029 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47343 * 299.99551 * 3 2 1 35 35 H 1.09001 * 109.47503 * 60.00394 * 3 2 1 36 36 H 1.09001 * 109.47140 * 305.00447 * 4 2 1 37 37 H 1.08993 * 109.47149 * 185.00307 * 4 2 1 38 38 H 1.09003 * 109.46944 * 59.99788 * 5 4 2 39 39 H 1.09001 * 109.47585 * 300.00486 * 5 4 2 40 40 H 1.09000 * 109.57916 * 246.19424 * 9 8 6 41 41 H 1.08992 * 109.58752 * 6.47629 * 9 8 6 42 42 H 1.09000 * 109.49137 * 174.58300 * 10 9 8 43 43 H 1.08993 * 109.49811 * 294.64709 * 10 9 8 44 44 H 1.09000 * 109.46006 * 178.60912 * 11 10 9 45 45 H 1.09006 * 109.46060 * 58.65927 * 11 10 9 46 46 H 1.08994 * 109.47278 * 59.99306 * 15 14 12 47 47 H 1.08995 * 109.47225 * 180.02562 * 15 14 12 48 48 H 1.09010 * 109.46632 * 299.99775 * 15 14 12 49 49 H 1.09000 * 109.47088 * 310.00339 * 16 14 12 50 50 H 1.08997 * 109.46925 * 70.00039 * 16 14 12 51 51 H 0.97005 * 119.99845 * 0.02562 * 19 17 16 52 52 H 0.96994 * 120.00301 * 180.02562 * 23 22 20 53 53 H 1.08999 * 109.58543 * 113.80083 * 28 8 6 54 54 H 1.09003 * 109.70593 * 353.44277 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6353 -2.1954 1.1879 6 6 2.1372 -2.9057 2.4186 7 8 2.7571 -2.2930 3.2620 8 7 1.8971 -4.2218 2.5822 9 6 1.1471 -4.9774 1.5695 10 6 1.9749 -6.1964 1.1505 11 6 2.3456 -7.0081 2.3938 12 6 3.1941 -6.1476 3.3327 13 1 4.0915 -5.8157 2.8105 14 7 3.5758 -6.9376 4.5109 15 6 4.3097 -6.1146 5.4814 16 6 4.3594 -8.1178 4.1223 17 6 4.5223 -9.0270 5.3129 18 8 4.0341 -8.7218 6.3804 19 7 5.2114 -10.1790 5.1919 20 6 5.3601 -11.0060 6.2751 21 1 4.9253 -10.7341 7.2257 22 6 6.0709 -12.1933 6.1505 23 7 6.2139 -12.9858 7.1890 24 14 6.8246 -12.6624 4.5070 25 1 8.2034 -12.1176 4.4211 26 1 6.8687 -14.1420 4.3869 27 1 6.0010 -12.1008 3.4064 28 6 2.3804 -4.9282 3.7763 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4427 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6054 -0.2618 2.1369 37 1 3.1263 -0.6442 1.2951 38 1 2.0699 -2.6549 0.3001 39 1 0.5490 -2.2724 1.1420 40 1 0.1971 -5.3078 1.9897 41 1 0.9624 -4.3430 0.7028 42 1 1.3902 -6.8171 0.4716 43 1 2.8834 -5.8640 0.6483 44 1 2.9137 -7.8894 2.0960 45 1 1.4365 -7.3193 2.9086 46 1 3.6798 -5.2861 5.8051 47 1 4.5805 -6.7241 6.3435 48 1 5.2140 -5.7229 5.0153 49 1 3.8414 -8.6517 3.3256 50 1 5.3411 -7.8019 3.7693 51 1 5.6028 -10.4226 4.3384 52 1 6.7104 -13.8144 7.1020 53 1 1.5311 -5.2545 4.3766 54 1 3.0111 -4.2633 4.3666 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690800136.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:26 Heat of formation + Delta-G solvation = -99.620644 kcal Electronic energy + Delta-G solvation = -30223.109045 eV Core-core repulsion = 26193.545573 eV Total energy + Delta-G solvation = -4029.563472 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.47691 -40.52114 -39.14343 -37.44387 -36.95067 -35.89061 -33.75957 -33.47171 -32.37496 -30.96199 -29.56610 -27.96599 -27.36629 -26.30509 -25.59203 -24.47957 -22.90465 -21.50917 -21.15386 -20.76530 -20.18101 -19.87771 -18.37443 -17.72770 -17.16946 -16.85918 -16.80053 -16.43216 -15.97339 -15.91408 -15.63347 -15.39986 -15.16517 -15.04773 -14.79063 -14.65781 -14.36855 -14.27689 -14.17668 -13.99991 -13.76655 -13.48417 -13.40581 -13.11959 -13.03281 -12.76296 -12.71571 -12.57952 -12.43725 -12.33868 -12.21721 -11.97839 -11.86247 -11.74820 -11.61063 -11.47660 -11.47317 -11.42276 -11.40664 -10.80315 -10.38301 -10.23211 -9.67828 -9.30090 -8.40725 -6.01609 1.29843 1.35550 1.44513 1.61421 1.90145 1.95227 2.23298 2.63198 3.14761 3.19055 3.48687 3.74806 3.85783 3.87054 3.97224 4.00358 4.08949 4.12016 4.19452 4.25398 4.31006 4.36332 4.37822 4.48233 4.51405 4.53641 4.57028 4.67105 4.69398 4.80356 4.82798 4.83953 4.88982 4.97158 5.00404 5.07391 5.11085 5.12421 5.15197 5.17081 5.21700 5.34313 5.38859 5.47961 5.51460 5.53428 5.56985 5.85845 5.97604 6.13351 6.42716 6.60115 6.88879 7.16836 7.39910 7.97451 8.76924 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.027306 B = 0.001923 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.174638 B =14559.888697 C =14885.533462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 C -0.150 4.150 4 C -0.098 4.098 5 C -0.130 4.130 6 C 0.504 3.496 7 O -0.594 6.594 8 N -0.610 5.610 9 C 0.099 3.901 10 C -0.125 4.125 11 C -0.119 4.119 12 C 0.079 3.921 13 H 0.041 0.959 14 N -0.529 5.529 15 C 0.025 3.975 16 C 0.053 3.947 17 C 0.452 3.548 18 O -0.604 6.604 19 N -0.591 5.591 20 C -0.327 4.327 21 H 0.055 0.945 22 C -0.015 4.015 23 N -0.935 5.935 24 Si 0.964 3.036 25 H -0.259 1.259 26 H -0.274 1.274 27 H -0.229 1.229 28 C 0.122 3.878 29 H 0.046 0.954 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.050 0.950 34 H 0.064 0.936 35 H 0.047 0.953 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.081 0.919 41 H 0.119 0.881 42 H 0.108 0.892 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.059 0.941 48 H 0.026 0.974 49 H 0.126 0.874 50 H 0.073 0.927 51 H 0.389 0.611 52 H 0.279 0.721 53 H 0.070 0.930 54 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.325 22.056 -26.701 36.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 C -0.208 4.208 4 C -0.136 4.136 5 C -0.169 4.169 6 C 0.295 3.705 7 O -0.475 6.475 8 N -0.342 5.342 9 C -0.023 4.023 10 C -0.163 4.163 11 C -0.157 4.157 12 C -0.029 4.029 13 H 0.059 0.941 14 N -0.254 5.254 15 C -0.123 4.123 16 C -0.078 4.078 17 C 0.240 3.760 18 O -0.488 6.488 19 N -0.233 5.233 20 C -0.456 4.456 21 H 0.073 0.927 22 C -0.214 4.214 23 N -0.576 5.576 24 Si 0.784 3.216 25 H -0.184 1.184 26 H -0.199 1.199 27 H -0.152 1.152 28 C -0.002 4.002 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.099 0.901 41 H 0.137 0.863 42 H 0.126 0.874 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.088 0.912 46 H 0.090 0.910 47 H 0.077 0.923 48 H 0.045 0.955 49 H 0.144 0.856 50 H 0.091 0.909 51 H 0.224 0.776 52 H 0.088 0.912 53 H 0.088 0.912 54 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.705 22.243 -25.222 35.608 hybrid contribution 1.577 -0.508 0.216 1.671 sum -10.128 21.735 -25.006 34.645 Atomic orbital electron populations 1.21923 0.94461 1.02586 1.01799 1.21118 0.96474 0.96016 0.97462 1.21858 1.00839 0.96209 1.01877 1.21369 1.00524 0.93441 0.98255 1.21823 1.04237 0.95796 0.95070 1.21589 0.78500 0.81535 0.88861 1.90687 1.43282 1.66664 1.46824 1.48264 1.55229 1.08600 1.22148 1.22143 0.94624 0.93910 0.91586 1.21907 1.01212 0.96436 0.96787 1.21724 1.00116 0.98233 0.95617 1.21972 0.97476 0.93268 0.90219 0.94079 1.61526 1.43460 1.07196 1.13211 1.22420 0.96166 0.97140 0.96536 1.21883 0.98678 0.91962 0.95266 1.20810 0.81347 0.82942 0.90910 1.90522 1.52060 1.74825 1.31414 1.42014 1.50196 1.19662 1.11454 1.18991 1.33851 1.01652 0.91146 0.92721 1.26109 0.97355 0.94981 1.02915 1.69806 1.41939 1.13108 1.32701 0.85376 0.79624 0.78825 0.77778 1.18383 1.19948 1.15213 1.21386 0.98535 0.92665 0.87625 0.93505 0.91982 0.91281 0.89806 0.93125 0.91678 0.93406 0.93258 0.93150 0.86176 0.86266 0.90080 0.86303 0.87414 0.91158 0.90636 0.91205 0.91031 0.92264 0.95537 0.85629 0.90949 0.77553 0.91175 0.91198 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 8.95 71.98 0.64 -0.43 16 2 C -0.09 -0.83 2.92 -10.79 -0.03 -0.87 16 3 C -0.15 -1.53 9.19 71.98 0.66 -0.87 16 4 C -0.10 -1.37 3.97 30.59 0.12 -1.24 16 5 C -0.13 -1.41 3.80 29.85 0.11 -1.29 16 6 C 0.50 10.40 7.70 87.66 0.67 11.08 16 7 O -0.59 -18.37 15.40 -3.04 -0.05 -18.42 16 8 N -0.61 -11.03 2.97 -818.95 -2.43 -13.46 16 9 C 0.10 0.91 6.34 86.36 0.55 1.46 16 10 C -0.12 -1.19 6.08 30.67 0.19 -1.00 16 11 C -0.12 -2.04 5.00 30.62 0.15 -1.88 16 12 C 0.08 1.85 2.09 44.98 0.09 1.95 16 13 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 14 N -0.53 -16.68 4.37 -901.23 -3.94 -20.62 16 15 C 0.03 0.87 8.75 127.69 1.12 1.98 16 16 C 0.05 1.68 5.27 85.55 0.45 2.13 16 17 C 0.45 20.69 7.47 87.65 0.66 21.34 16 18 O -0.60 -33.80 13.91 -3.07 -0.04 -33.85 16 19 N -0.59 -28.04 5.09 -307.00 -1.56 -29.60 16 20 C -0.33 -19.28 10.16 84.04 0.85 -18.43 16 21 H 0.05 3.85 7.39 -2.91 -0.02 3.82 16 22 C -0.02 -0.84 5.50 84.92 0.47 -0.37 16 23 N -0.93 -56.63 13.96 21.66 0.30 -56.32 16 24 Si 0.96 38.66 27.74 68.60 1.90 40.56 16 25 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 26 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 27 H -0.23 -7.62 6.52 99.48 0.65 -6.97 16 28 C 0.12 2.94 5.15 86.36 0.44 3.38 16 29 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.07 0.32 6.57 -2.39 -0.02 0.30 16 32 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 34 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.05 0.89 8.10 -2.39 -0.02 0.87 16 37 H 0.05 0.89 8.10 -2.39 -0.02 0.87 16 38 H 0.12 0.68 7.69 -2.39 -0.02 0.66 16 39 H 0.12 0.73 6.36 -2.39 -0.02 0.72 16 40 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.12 0.33 5.93 -2.39 -0.01 0.32 16 42 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.08 1.24 6.14 -2.39 -0.01 1.22 16 45 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 46 H 0.07 2.28 6.36 -2.39 -0.02 2.27 16 47 H 0.06 2.49 5.82 -2.39 -0.01 2.48 16 48 H 0.03 0.82 8.14 -2.38 -0.02 0.80 16 49 H 0.13 3.20 5.81 -2.39 -0.01 3.18 16 50 H 0.07 1.99 8.12 -2.39 -0.02 1.98 16 51 H 0.39 15.19 5.76 -92.70 -0.53 14.66 16 52 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 53 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 54 H 0.07 2.01 5.56 -2.39 -0.01 1.99 16 Total: -1.00 -83.27 410.39 1.63 -81.65 By element: Atomic # 1 Polarization: 32.84 SS G_CDS: 0.29 Total: 33.13 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: 7.15 Total: 16.93 kcal Atomic # 7 Polarization: -112.38 SS G_CDS: -7.63 Total: -120.01 kcal Atomic # 8 Polarization: -52.18 SS G_CDS: -0.09 Total: -52.27 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 1.90 Total: 40.56 kcal Total: -83.27 1.63 -81.65 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690800136.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.975 kcal (2) G-P(sol) polarization free energy of solvation -83.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds