Wall clock time and date at job start Sat Apr 11 2020 05:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 C 1.52994 * 109.47404 * 294.99916 * 4 2 1 6 6 C 1.50698 * 109.47502 * 179.97438 * 5 4 2 7 7 O 1.21290 * 119.99874 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00388 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00022 * 180.02562 * 8 6 5 10 10 H 1.08999 * 110.43682 * 36.08058 * 9 8 6 11 11 C 1.54276 * 110.47965 * 273.54092 * 9 8 6 12 12 C 1.53877 * 106.59332 * 217.71142 * 11 9 8 13 13 C 1.54266 * 106.60284 * 0.02562 * 12 11 9 14 14 H 1.09006 * 110.48211 * 264.93017 * 13 12 11 15 15 C 1.52994 * 110.49033 * 142.41931 * 13 12 11 16 16 N 1.46902 * 109.47248 * 66.45148 * 15 13 12 17 17 C 1.46897 * 111.00352 * 180.02562 * 16 15 13 18 18 C 1.50697 * 109.47249 * 179.97438 * 17 16 15 19 19 O 1.21291 * 120.00306 * 0.02562 * 18 17 16 20 20 N 1.34778 * 119.99956 * 179.97438 * 18 17 16 21 21 C 1.37101 * 120.00038 * 180.02562 * 20 18 17 22 22 H 1.07994 * 120.00049 * 0.02562 * 21 20 18 23 23 C 1.38952 * 120.00003 * 180.02562 * 21 20 18 24 24 N 1.31411 * 119.99774 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00050 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46979 * 59.99881 * 25 23 21 27 27 H 1.48500 * 109.47041 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.46895 * 300.00245 * 25 23 21 29 29 C 1.54884 * 110.48595 * 158.77008 * 9 8 6 30 30 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 32 32 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 33 33 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 34 34 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 35 35 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 36 36 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 37 37 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 38 38 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 39 39 H 1.09000 * 109.47476 * 300.00087 * 5 4 2 40 40 H 1.09008 * 109.46970 * 60.00049 * 5 4 2 41 41 H 0.96996 * 119.99797 * 359.97438 * 8 6 5 42 42 H 1.08996 * 110.03331 * 336.99551 * 11 9 8 43 43 H 1.09002 * 110.03031 * 98.38197 * 11 9 8 44 44 H 1.09004 * 110.02880 * 119.28602 * 12 11 9 45 45 H 1.08998 * 110.03405 * 240.71743 * 12 11 9 46 46 H 1.08996 * 109.47665 * 186.45141 * 15 13 12 47 47 H 1.09004 * 109.47157 * 306.45396 * 15 13 12 48 48 H 1.00897 * 111.00239 * 56.04399 * 16 15 13 49 49 H 1.09000 * 109.46973 * 299.99778 * 17 16 15 50 50 H 1.08997 * 109.47102 * 59.99797 * 17 16 15 51 51 H 0.96998 * 120.00205 * 0.02562 * 20 18 17 52 52 H 0.97006 * 119.99705 * 179.97438 * 24 23 21 53 53 H 1.09003 * 110.75726 * 274.93079 * 29 9 8 54 54 H 1.09006 * 110.76039 * 38.29946 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6352 -2.1954 -1.1881 6 6 2.1369 -2.9056 -2.4189 7 8 2.7576 -2.2931 -3.2619 8 7 1.8959 -4.2215 -2.5830 9 6 2.3842 -4.9120 -3.7792 10 1 3.3541 -4.5150 -4.0786 11 6 1.3673 -4.7793 -4.9318 12 6 1.3732 -6.1240 -5.6800 13 6 2.3928 -7.0270 -4.9556 14 1 3.3651 -6.9738 -5.4455 15 6 1.8936 -8.4726 -4.9146 16 7 1.8561 -9.0166 -6.2787 17 6 1.3799 -10.4062 -6.2785 18 6 1.3544 -10.9288 -7.6917 19 8 1.6995 -10.2141 -8.6089 20 7 0.9492 -12.1907 -7.9364 21 6 0.9265 -12.6663 -9.2221 22 1 1.2338 -12.0299 -10.0387 23 6 0.5082 -13.9671 -9.4744 24 7 0.1348 -14.7416 -8.4806 25 14 0.4779 -14.6153 -11.2260 26 1 1.8476 -14.5617 -11.7974 27 1 -0.0031 -16.0202 -11.2257 28 1 -0.4341 -13.7794 -12.0475 29 6 2.4742 -6.4373 -3.5258 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5140 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 1.6768 1.9562 0.8901 35 1 3.1301 1.4425 0.0005 36 1 1.6768 1.9563 -0.8899 37 1 1.6053 -0.2617 -2.1370 38 1 3.1263 -0.6443 -1.2952 39 1 2.0698 -2.6550 -0.3004 40 1 0.5488 -2.2723 -1.1421 41 1 1.3999 -4.7115 -1.9086 42 1 0.3735 -4.5790 -4.5318 43 1 1.6679 -3.9758 -5.6042 44 1 0.3821 -6.5761 -5.6430 45 1 1.6770 -5.9736 -6.7159 46 1 2.5673 -9.0725 -4.3027 47 1 0.8921 -8.4992 -4.4852 48 1 2.7596 -8.9437 -6.7220 49 1 2.0497 -11.0197 -5.6759 50 1 0.3748 -10.4458 -5.8587 51 1 0.6735 -12.7624 -7.2029 52 1 -0.1576 -15.6496 -8.6568 53 1 3.4228 -6.6954 -3.0548 54 1 1.6352 -6.7785 -2.9193 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700894164.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:05 Heat of formation + Delta-G solvation = -137.022214 kcal Electronic energy + Delta-G solvation = -28391.887786 eV Core-core repulsion = 24360.702461 eV Total energy + Delta-G solvation = -4031.185326 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.03888 -40.16536 -39.27267 -37.45260 -36.58886 -35.82560 -34.52368 -33.25411 -31.98506 -30.67604 -29.26983 -27.98309 -27.90956 -26.12357 -25.12839 -23.88201 -21.71920 -21.65449 -21.08658 -20.73353 -20.45052 -19.86456 -17.98107 -17.86676 -17.21898 -17.12321 -16.66779 -16.52487 -16.29003 -15.96191 -15.58721 -15.35796 -15.09886 -15.01852 -14.79288 -14.60452 -14.42830 -14.06902 -13.94250 -13.56606 -13.49845 -13.16473 -13.08255 -13.03366 -12.83556 -12.74870 -12.58913 -12.50119 -12.42858 -12.20123 -12.12626 -11.93601 -11.78361 -11.66587 -11.58752 -11.49724 -11.49485 -11.42700 -11.31822 -10.80260 -10.33004 -10.01984 -10.00903 -9.24706 -8.46299 -5.95018 1.39998 1.41868 1.52695 1.69769 2.06602 2.24077 2.30250 2.96949 3.21197 3.51740 3.56537 3.74437 3.82116 3.89674 3.97348 4.00939 4.20644 4.27231 4.34014 4.38848 4.43903 4.50803 4.53978 4.55294 4.59130 4.62787 4.66399 4.71726 4.76109 4.82239 4.85988 4.88361 4.92273 4.97641 5.03399 5.08685 5.16317 5.19144 5.21385 5.23546 5.34246 5.38528 5.41107 5.50319 5.52549 5.55780 5.63811 5.91889 6.15114 6.44683 6.61196 6.63786 7.13252 7.34594 7.57236 8.13020 8.70872 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.043054 B = 0.001299 C = 0.001292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.186244 B =21548.210375 C =21665.036081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.093 4.093 3 C -0.151 4.151 4 C -0.098 4.098 5 C -0.134 4.134 6 C 0.504 3.496 7 O -0.591 6.591 8 N -0.712 5.712 9 C 0.143 3.857 10 H 0.069 0.931 11 C -0.130 4.130 12 C -0.103 4.103 13 C -0.083 4.083 14 H 0.069 0.931 15 C 0.071 3.929 16 N -0.684 5.684 17 C 0.066 3.934 18 C 0.436 3.564 19 O -0.625 6.625 20 N -0.573 5.573 21 C -0.337 4.337 22 H 0.077 0.923 23 C -0.010 4.010 24 N -0.920 5.920 25 Si 0.991 3.009 26 H -0.272 1.272 27 H -0.269 1.269 28 H -0.273 1.273 29 C -0.107 4.107 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.046 0.954 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.051 0.949 36 H 0.047 0.953 37 H 0.048 0.952 38 H 0.052 0.948 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.417 0.583 42 H 0.071 0.929 43 H 0.045 0.955 44 H 0.065 0.935 45 H 0.046 0.954 46 H 0.043 0.957 47 H 0.082 0.918 48 H 0.342 0.658 49 H 0.066 0.934 50 H 0.104 0.896 51 H 0.397 0.603 52 H 0.278 0.722 53 H 0.085 0.915 54 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.787 22.952 25.015 33.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 C -0.208 4.208 4 C -0.136 4.136 5 C -0.173 4.173 6 C 0.293 3.707 7 O -0.472 6.472 8 N -0.364 5.364 9 C 0.038 3.962 10 H 0.087 0.913 11 C -0.168 4.168 12 C -0.141 4.141 13 C -0.103 4.103 14 H 0.088 0.912 15 C -0.057 4.057 16 N -0.316 5.316 17 C -0.066 4.066 18 C 0.223 3.777 19 O -0.511 6.511 20 N -0.210 5.210 21 C -0.466 4.466 22 H 0.095 0.905 23 C -0.210 4.210 24 N -0.560 5.560 25 Si 0.815 3.185 26 H -0.197 1.197 27 H -0.194 1.194 28 H -0.198 1.198 29 C -0.145 4.145 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.255 0.745 42 H 0.090 0.910 43 H 0.064 0.936 44 H 0.084 0.916 45 H 0.065 0.935 46 H 0.062 0.938 47 H 0.100 0.900 48 H 0.160 0.840 49 H 0.084 0.916 50 H 0.122 0.878 51 H 0.231 0.769 52 H 0.087 0.913 53 H 0.103 0.897 54 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.755 23.909 23.690 33.666 hybrid contribution 0.458 -1.302 -0.496 1.467 sum 1.213 22.607 23.194 32.411 Atomic orbital electron populations 1.21928 0.94670 1.02497 1.01750 1.21118 0.96312 0.96069 0.97623 1.21857 1.00907 0.96195 1.01832 1.21356 1.00596 0.93603 0.98046 1.21787 1.04188 0.95874 0.95473 1.21466 0.78460 0.82255 0.88552 1.90703 1.42808 1.66998 1.46673 1.46010 1.57503 1.09353 1.23555 1.21683 0.96817 0.92748 0.84980 0.91254 1.22502 0.99732 0.97340 0.97266 1.21948 0.99729 0.93952 0.98441 1.21843 0.98831 0.93534 0.96063 0.91230 1.22072 1.01515 0.94164 0.87983 1.60053 1.34295 1.17705 1.19578 1.21518 1.02799 0.90119 0.92158 1.20971 0.82360 0.82150 0.92176 1.90492 1.54376 1.58279 1.47982 1.41922 1.58518 1.11808 1.08767 1.19636 1.43717 0.97478 0.85809 0.90461 1.26004 0.95946 0.95623 1.03456 1.69663 1.44281 1.09084 1.33020 0.85017 0.78784 0.77453 0.77256 1.19730 1.19357 1.19809 1.22664 1.04018 0.91646 0.96193 0.91405 0.92121 0.93488 0.89925 0.91819 0.92974 0.93395 0.93300 0.92941 0.86301 0.86621 0.74523 0.91044 0.93625 0.91637 0.93544 0.93849 0.89980 0.84014 0.91570 0.87789 0.76937 0.91273 0.89674 0.88477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 8.95 71.98 0.64 -0.44 16 2 C -0.09 -0.79 2.92 -10.79 -0.03 -0.82 16 3 C -0.15 -1.43 9.19 71.98 0.66 -0.77 16 4 C -0.10 -1.24 3.97 30.59 0.12 -1.11 16 5 C -0.13 -1.19 5.45 29.85 0.16 -1.03 16 6 C 0.50 8.52 7.82 87.66 0.69 9.21 16 7 O -0.59 -16.21 15.69 -3.06 -0.05 -16.26 16 8 N -0.71 -8.87 5.11 -437.43 -2.24 -11.11 16 9 C 0.14 2.39 3.16 46.07 0.15 2.53 16 10 H 0.07 1.51 7.66 -2.39 -0.02 1.49 16 11 C -0.13 -2.58 6.53 31.32 0.20 -2.37 16 12 C -0.10 -2.25 6.18 31.32 0.19 -2.06 16 13 C -0.08 -1.55 3.04 -9.73 -0.03 -1.58 16 14 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 15 C 0.07 1.46 5.01 86.30 0.43 1.90 16 16 N -0.68 -20.84 5.93 -517.96 -3.07 -23.91 16 17 C 0.07 2.22 6.17 85.56 0.53 2.75 16 18 C 0.44 20.79 7.82 87.66 0.69 21.48 16 19 O -0.62 -35.04 15.78 -3.06 -0.05 -35.09 16 20 N -0.57 -29.45 5.29 -306.99 -1.62 -31.07 16 21 C -0.34 -19.27 9.68 84.04 0.81 -18.46 16 22 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 23 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 24 N -0.92 -49.51 13.05 21.66 0.28 -49.23 16 25 Si 0.99 43.04 29.55 68.60 2.03 45.07 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 27 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 28 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 29 C -0.11 -1.35 5.92 31.88 0.19 -1.16 16 30 H 0.07 0.33 6.57 -2.39 -0.02 0.31 16 31 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.05 0.42 8.14 -2.39 -0.02 0.41 16 33 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.05 0.82 8.10 -2.39 -0.02 0.80 16 38 H 0.05 0.83 8.10 -2.38 -0.02 0.81 16 39 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.12 0.58 6.57 -2.38 -0.02 0.56 16 41 H 0.42 2.23 8.53 -92.71 -0.79 1.44 16 42 H 0.07 1.31 8.04 -2.39 -0.02 1.29 16 43 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.06 1.51 7.77 -2.38 -0.02 1.49 16 45 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.08 1.54 8.05 -2.39 -0.02 1.52 16 48 H 0.34 11.20 8.43 -89.70 -0.76 10.44 16 49 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 50 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 51 H 0.40 19.24 7.90 -92.71 -0.73 18.51 16 52 H 0.28 14.02 8.31 -92.70 -0.77 13.25 16 53 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 54 H 0.10 0.85 7.94 -2.38 -0.02 0.83 16 Total: -1.00 -74.72 432.16 -0.23 -74.95 By element: Atomic # 1 Polarization: 40.06 SS G_CDS: -1.39 Total: 38.67 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 5.87 Total: 7.97 kcal Atomic # 7 Polarization: -108.67 SS G_CDS: -6.65 Total: -115.32 kcal Atomic # 8 Polarization: -51.25 SS G_CDS: -0.10 Total: -51.34 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -74.72 -0.23 -74.95 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700894164.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.074 kcal (2) G-P(sol) polarization free energy of solvation -74.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds