Wall clock time and date at job start Sat Apr 11 2020 05:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34773 * 119.99922 * 2 1 4 4 O 1.21283 * 120.00215 * 180.02562 * 3 2 1 5 5 C 1.50701 * 120.00135 * 0.02562 * 3 2 1 6 6 N 1.46504 * 109.47176 * 180.02562 * 5 3 2 7 7 C 1.34780 * 119.99901 * 180.02562 * 6 5 3 8 8 O 1.21284 * 120.00010 * 359.97438 * 7 6 5 9 9 C 1.50693 * 119.99853 * 179.97438 * 7 6 5 10 10 C 1.53004 * 109.46915 * 179.97438 * 9 7 6 11 11 C 1.53008 * 109.46977 * 60.00340 * 10 9 7 12 12 C 1.53002 * 109.47295 * 179.97438 * 10 9 7 13 13 C 1.52994 * 109.47328 * 300.00068 * 10 9 7 14 14 C 1.46499 * 120.00125 * 179.97438 * 2 1 3 15 15 C 1.53045 * 109.46217 * 299.99745 * 14 2 1 16 16 C 1.53188 * 109.31391 * 181.38498 * 15 14 2 17 17 N 1.46936 * 108.89281 * 305.29783 * 16 15 14 18 18 C 1.36935 * 120.62903 * 233.68017 * 17 16 15 19 19 H 1.08007 * 119.99920 * 27.39746 * 18 17 16 20 20 C 1.38804 * 120.00238 * 207.39383 * 18 17 16 21 21 N 1.31624 * 120.00025 * 17.25587 * 20 18 17 22 22 Si 1.86801 * 120.00311 * 197.25673 * 20 18 17 23 23 H 1.48497 * 109.47244 * 60.00150 * 22 20 18 24 24 H 1.48504 * 109.46988 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47113 * 300.00082 * 22 20 18 26 26 C 1.47199 * 118.55327 * 53.53951 * 17 16 15 27 27 C 1.53035 * 109.45950 * 60.07230 * 14 2 1 28 28 H 1.09005 * 109.47097 * 269.99794 * 1 2 3 29 29 H 1.08998 * 109.47617 * 30.00069 * 1 2 3 30 30 H 1.09006 * 109.47226 * 150.00467 * 1 2 3 31 31 H 1.09004 * 109.46930 * 299.99801 * 5 3 2 32 32 H 1.08999 * 109.47121 * 60.00015 * 5 3 2 33 33 H 0.96998 * 119.99951 * 359.97438 * 6 5 3 34 34 H 1.08998 * 109.47283 * 299.99657 * 9 7 6 35 35 H 1.08999 * 109.47286 * 59.99813 * 9 7 6 36 36 H 1.08995 * 109.47145 * 59.99450 * 11 10 9 37 37 H 1.08996 * 109.46583 * 180.02562 * 11 10 9 38 38 H 1.09001 * 109.46483 * 299.99138 * 11 10 9 39 39 H 1.09005 * 109.46375 * 60.00041 * 12 10 9 40 40 H 1.08992 * 109.47051 * 179.97438 * 12 10 9 41 41 H 1.08995 * 109.47174 * 300.00763 * 12 10 9 42 42 H 1.08999 * 109.47094 * 59.99676 * 13 10 9 43 43 H 1.09004 * 109.47425 * 180.02562 * 13 10 9 44 44 H 1.08999 * 109.46993 * 299.99936 * 13 10 9 45 45 H 1.09002 * 109.44878 * 180.02562 * 14 2 1 46 46 H 1.09001 * 109.49105 * 61.43765 * 15 14 2 47 47 H 1.08999 * 109.52410 * 301.35407 * 15 14 2 48 48 H 1.08994 * 109.58954 * 65.15196 * 16 15 14 49 49 H 1.08992 * 109.58924 * 185.43968 * 16 15 14 50 50 H 0.96996 * 120.00327 * 179.97438 * 21 20 18 51 51 H 1.09001 * 109.53153 * 186.67308 * 26 17 16 52 52 H 1.09002 * 109.68302 * 66.36980 * 26 17 16 53 53 H 1.09007 * 109.49366 * 298.56131 * 27 14 2 54 54 H 1.08993 * 109.50367 * 58.62610 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1672 -0.0005 5 6 1.3853 2.4723 0.0006 6 7 2.3373 3.5858 -0.0002 7 6 1.8880 4.8566 0.0007 8 8 0.6956 5.0782 0.0016 9 6 2.8673 6.0019 0.0005 10 6 2.1022 7.3270 0.0010 11 6 1.2231 7.4078 1.2507 12 6 3.0964 8.4900 0.0015 13 6 1.2222 7.4082 -1.2478 14 6 2.1975 -1.2687 0.0006 15 6 1.8277 -2.0705 1.2506 16 6 2.6213 -3.3807 1.2654 17 7 2.3855 -4.0940 0.0026 18 6 1.9517 -5.3928 0.0055 19 1 1.3716 -5.7666 0.8364 20 6 2.2576 -6.2291 -1.0592 21 7 3.2238 -5.9067 -1.8928 22 14 1.2979 -7.8121 -1.3093 23 1 -0.1394 -7.4941 -1.5044 24 1 1.8156 -8.5209 -2.5072 25 1 1.4551 -8.6802 -0.1147 26 6 2.6226 -3.3810 -1.2631 27 6 1.8290 -2.0707 -1.2496 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3634 -0.8901 -0.5138 31 1 0.7583 2.5302 -0.8892 32 1 0.7590 2.5298 0.8908 33 1 3.2910 3.4086 -0.0005 34 1 3.4945 5.9439 0.8901 35 1 3.4934 5.9446 -0.8899 36 1 1.8501 7.3499 2.1404 37 1 0.6778 8.3515 1.2507 38 1 0.5147 6.5793 1.2507 39 1 3.7231 8.4325 -0.8886 40 1 2.5514 9.4338 0.0013 41 1 3.7231 8.4319 0.8913 42 1 0.5139 6.5797 -1.2477 43 1 0.6775 8.3524 -1.2478 44 1 1.8485 7.3506 -2.1380 45 1 3.2691 -1.0691 0.0009 46 1 0.7604 -2.2917 1.2383 47 1 2.0685 -1.4892 2.1407 48 1 3.6842 -3.1629 1.3689 49 1 2.2917 -3.9981 2.1009 50 1 3.4378 -6.4913 -2.6367 51 1 2.2921 -3.9998 -2.0974 52 1 3.6855 -3.1633 -1.3683 53 1 0.7616 -2.2920 -1.2383 54 1 2.0705 -1.4893 -2.1393 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713056773.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:53 Heat of formation + Delta-G solvation = -79.327190 kcal Electronic energy + Delta-G solvation = -30348.884962 eV Core-core repulsion = 26320.201480 eV Total energy + Delta-G solvation = -4028.683482 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.59657 -40.84187 -39.09383 -37.52014 -36.64221 -35.43911 -34.31074 -32.11616 -31.48646 -30.34484 -28.05809 -28.05045 -27.98169 -27.93057 -26.50738 -23.90585 -23.70305 -21.72279 -21.08445 -20.34183 -19.75330 -18.78218 -18.42033 -17.82585 -17.18004 -17.02320 -16.85405 -16.34714 -16.19521 -15.64643 -15.39144 -15.25464 -15.24697 -15.13261 -14.82443 -14.61787 -14.21016 -14.11875 -13.97340 -13.72813 -13.65838 -13.22149 -13.12324 -13.00353 -12.92522 -12.90556 -12.63256 -12.58296 -12.55204 -12.18879 -12.09405 -12.02646 -12.00674 -11.90465 -11.60666 -11.50192 -11.48142 -11.35855 -10.95188 -10.56443 -10.50265 -10.13680 -9.66016 -8.72825 -7.88184 -5.33344 1.43913 1.48424 1.50184 1.57267 1.65914 1.69601 2.36067 2.51568 3.27684 3.34578 3.64129 3.73531 3.85471 3.90910 3.97172 4.03690 4.18164 4.26725 4.29555 4.33368 4.40102 4.45370 4.62772 4.63362 4.65575 4.67755 4.70495 4.71880 4.83769 4.88168 4.90269 4.96427 5.01874 5.02712 5.05022 5.11845 5.12801 5.17162 5.21001 5.29330 5.36152 5.40852 5.44791 5.52795 5.57183 5.63141 5.68705 5.69990 6.32911 6.37611 6.50662 6.99082 7.12834 7.24838 7.83102 8.36241 9.18968 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.034588 B = 0.001842 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.328832 B =15197.501621 C =15258.195098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.600 5.600 3 C 0.505 3.495 4 O -0.578 6.578 5 C 0.111 3.889 6 N -0.721 5.721 7 C 0.515 3.485 8 O -0.558 6.558 9 C -0.130 4.130 10 C -0.053 4.053 11 C -0.151 4.151 12 C -0.139 4.139 13 C -0.151 4.151 14 C 0.155 3.845 15 C -0.121 4.121 16 C 0.142 3.858 17 N -0.608 5.608 18 C -0.261 4.261 19 H 0.071 0.929 20 C -0.052 4.052 21 N -0.937 5.937 22 Si 0.969 3.031 23 H -0.276 1.276 24 H -0.297 1.297 25 H -0.276 1.276 26 C 0.180 3.820 27 C -0.128 4.128 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.413 0.587 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.052 0.948 44 H 0.052 0.948 45 H 0.069 0.931 46 H 0.072 0.928 47 H 0.072 0.928 48 H 0.008 0.992 49 H 0.062 0.938 50 H 0.250 0.750 51 H 0.060 0.940 52 H -0.009 1.009 53 H 0.069 0.931 54 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.045 26.641 4.472 27.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.331 5.331 3 C 0.293 3.707 4 O -0.459 6.459 5 C -0.016 4.016 6 N -0.376 5.376 7 C 0.304 3.696 8 O -0.437 6.437 9 C -0.169 4.169 10 C -0.053 4.053 11 C -0.208 4.208 12 C -0.196 4.196 13 C -0.208 4.208 14 C 0.052 3.948 15 C -0.160 4.160 16 C 0.016 3.984 17 N -0.332 5.332 18 C -0.391 4.391 19 H 0.089 0.911 20 C -0.247 4.247 21 N -0.583 5.583 22 Si 0.797 3.203 23 H -0.201 1.201 24 H -0.223 1.223 25 H -0.202 1.202 26 C 0.053 3.947 27 C -0.168 4.168 28 H 0.095 0.905 29 H 0.114 0.886 30 H 0.095 0.905 31 H 0.126 0.874 32 H 0.129 0.871 33 H 0.251 0.749 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.087 0.913 46 H 0.091 0.909 47 H 0.091 0.909 48 H 0.026 0.974 49 H 0.081 0.919 50 H 0.059 0.941 51 H 0.078 0.922 52 H 0.009 0.991 53 H 0.087 0.913 54 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.224 26.677 4.356 27.530 hybrid contribution 0.383 -1.462 -0.441 1.575 sum -4.841 25.214 3.915 25.972 Atomic orbital electron populations 1.22122 0.77169 1.04713 1.03684 1.48021 1.08560 1.04943 1.71595 1.20958 0.87767 0.86328 0.75619 1.90675 1.15479 1.87501 1.52235 1.21077 0.92053 0.82870 1.05621 1.45921 1.11270 1.04893 1.75523 1.21155 0.90091 0.83749 0.74654 1.90588 1.18216 1.84485 1.50452 1.21848 0.97577 0.91415 1.06101 1.20304 0.95412 0.93417 0.96190 1.22060 1.00022 1.02283 0.96439 1.21861 0.98389 0.96893 1.02453 1.22062 1.00031 1.02276 0.96472 1.20819 0.96281 0.82103 0.95621 1.22147 1.01264 0.96005 0.96623 1.21005 0.95853 0.92556 0.88956 1.44383 1.78006 1.10011 1.00785 1.19495 1.25973 0.87602 1.06076 0.91132 1.25820 0.97948 1.00989 0.99962 1.70186 1.30175 1.39640 1.18303 0.85325 0.78585 0.79491 0.76942 1.20145 1.22315 1.20150 1.20573 0.94214 0.90379 0.89520 1.22285 1.01196 0.96611 0.96700 0.90490 0.88594 0.90498 0.87354 0.87146 0.74898 0.87122 0.87241 0.92816 0.92928 0.91980 0.91924 0.92274 0.91838 0.91990 0.92912 0.92914 0.91268 0.90890 0.90914 0.97420 0.91930 0.94111 0.92180 0.99112 0.91262 0.92352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.11 9.33 127.77 1.19 2.30 16 2 N -0.60 -14.97 2.76 -822.44 -2.27 -17.24 16 3 C 0.50 12.75 7.74 87.66 0.68 13.43 16 4 O -0.58 -18.90 14.99 -3.04 -0.05 -18.94 16 5 C 0.11 2.05 4.71 85.63 0.40 2.45 16 6 N -0.72 -13.18 5.53 -466.77 -2.58 -15.76 16 7 C 0.51 9.33 7.24 87.65 0.63 9.97 16 8 O -0.56 -12.92 11.35 -3.04 -0.03 -12.95 16 9 C -0.13 -1.62 4.77 29.85 0.14 -1.47 16 10 C -0.05 -0.71 0.77 -52.18 -0.04 -0.75 16 11 C -0.15 -2.34 8.18 71.98 0.59 -1.75 16 12 C -0.14 -1.35 8.47 71.98 0.61 -0.74 16 13 C -0.15 -2.38 8.18 71.98 0.59 -1.79 16 14 C 0.16 5.07 2.48 45.02 0.11 5.19 16 15 C -0.12 -3.85 5.34 30.67 0.16 -3.68 16 16 C 0.14 5.80 6.51 86.36 0.56 6.36 16 17 N -0.61 -30.05 3.01 -698.39 -2.10 -32.15 16 18 C -0.26 -14.08 9.59 84.03 0.81 -13.27 16 19 H 0.07 3.66 7.89 -2.91 -0.02 3.63 16 20 C -0.05 -2.87 4.92 84.86 0.42 -2.45 16 21 N -0.94 -55.33 11.18 21.65 0.24 -55.09 16 22 Si 0.97 44.14 29.59 68.60 2.03 46.17 16 23 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 24 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 25 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 26 C 0.18 8.64 5.33 86.31 0.46 9.10 16 27 C -0.13 -4.67 5.31 30.67 0.16 -4.51 16 28 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 29 H 0.10 1.15 6.44 -2.39 -0.02 1.14 16 30 H 0.08 1.44 6.46 -2.38 -0.02 1.43 16 31 H 0.11 1.79 7.40 -2.39 -0.02 1.77 16 32 H 0.11 1.78 8.11 -2.39 -0.02 1.76 16 33 H 0.41 7.54 7.44 -92.71 -0.69 6.85 16 34 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.06 1.26 5.51 -2.39 -0.01 1.25 16 39 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 40 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.06 1.28 5.51 -2.39 -0.01 1.26 16 43 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 44 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.07 2.68 6.90 -2.39 -0.02 2.66 16 46 H 0.07 2.20 7.72 -2.39 -0.02 2.18 16 47 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 48 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 49 H 0.06 2.45 7.93 -2.39 -0.02 2.43 16 50 H 0.25 14.35 8.31 -92.71 -0.77 13.57 16 51 H 0.06 3.26 6.04 -2.39 -0.01 3.24 16 52 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 53 H 0.07 2.40 6.73 -2.38 -0.02 2.38 16 54 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -69.26 410.95 2.91 -66.35 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: 0.19 Total: 21.24 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: 7.48 Total: 18.37 kcal Atomic # 7 Polarization: -113.53 SS G_CDS: -6.71 Total: -120.24 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -0.08 Total: -31.90 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -69.26 2.91 -66.35 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713056773.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.980 kcal (2) G-P(sol) polarization free energy of solvation -69.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds