Wall clock time and date at job start Sat Apr 11 2020 05:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21281 * 120.00284 * 2 1 4 4 N 1.34778 * 120.00001 * 180.02562 * 2 1 3 5 5 C 1.46500 * 119.99957 * 184.77636 * 4 2 1 6 6 C 1.53002 * 109.47285 * 296.15275 * 5 4 2 7 7 C 1.50701 * 109.47375 * 56.15446 * 5 4 2 8 8 O 1.21282 * 119.99422 * 7.57575 * 7 5 4 9 9 N 1.34770 * 120.00240 * 187.57522 * 7 5 4 10 10 C 1.46930 * 120.63201 * 354.40414 * 9 7 5 11 11 C 1.53192 * 108.77811 * 233.62996 * 10 9 7 12 12 C 1.53038 * 109.30899 * 305.36547 * 11 10 9 13 13 C 1.53038 * 109.54011 * 61.36362 * 12 11 10 14 14 H 1.08996 * 109.52412 * 58.60517 * 13 12 11 15 15 C 1.53007 * 109.49624 * 178.68490 * 13 12 11 16 16 N 1.46504 * 109.46851 * 294.83863 * 15 13 12 17 17 C 1.36936 * 119.99633 * 180.02562 * 16 15 13 18 18 H 1.07997 * 120.00189 * 359.97438 * 17 16 15 19 19 C 1.38819 * 119.99813 * 179.97438 * 17 16 15 20 20 N 1.31620 * 119.99573 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 119.99920 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47302 * 60.00573 * 21 19 17 23 23 H 1.48501 * 109.47141 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47532 * 300.00401 * 21 19 17 25 25 C 1.46922 * 120.63161 * 174.42263 * 9 7 5 26 26 C 1.53002 * 109.46926 * 176.15502 * 5 4 2 27 27 C 1.53004 * 109.47230 * 305.95960 * 26 5 4 28 28 C 1.52998 * 109.47320 * 65.95905 * 26 5 4 29 29 H 1.08998 * 109.47363 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47067 * 300.00155 * 1 2 3 31 31 H 1.08997 * 109.47069 * 59.99743 * 1 2 3 32 32 H 0.97000 * 119.99910 * 4.77551 * 4 2 1 33 33 H 1.08997 * 109.47036 * 193.16587 * 6 5 4 34 34 H 1.09004 * 109.46910 * 313.16204 * 6 5 4 35 35 H 1.08993 * 109.47132 * 73.15767 * 6 5 4 36 36 H 1.09001 * 109.58976 * 113.83412 * 10 9 7 37 37 H 1.09003 * 109.58284 * 353.41630 * 10 9 7 38 38 H 1.08995 * 109.49878 * 185.41253 * 11 10 9 39 39 H 1.09002 * 109.49346 * 65.31030 * 11 10 9 40 40 H 1.09007 * 109.46186 * 301.33954 * 12 11 10 41 41 H 1.09002 * 109.45165 * 181.38115 * 12 11 10 42 42 H 1.08993 * 109.47298 * 54.83608 * 15 13 12 43 43 H 1.08996 * 109.47082 * 174.83976 * 15 13 12 44 44 H 0.96991 * 120.00077 * 359.97438 * 16 15 13 45 45 H 0.97003 * 119.99379 * 180.02562 * 20 19 17 46 46 H 1.08999 * 109.58453 * 6.58584 * 25 9 7 47 47 H 1.08996 * 109.58869 * 246.15820 * 25 9 7 48 48 H 1.08999 * 109.47443 * 185.96214 * 26 5 4 49 49 H 1.08999 * 109.46700 * 59.99799 * 27 26 5 50 50 H 1.08992 * 109.47541 * 180.02562 * 27 26 5 51 51 H 1.08999 * 109.47039 * 300.00250 * 27 26 5 52 52 H 1.08997 * 109.47282 * 305.06349 * 28 26 5 53 53 H 1.09003 * 109.47365 * 65.06771 * 28 26 5 54 54 H 1.09003 * 109.46907 * 185.06548 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6420 -1.1695 0.1051 6 6 4.2432 -0.4805 -1.1216 7 6 4.0568 -0.4293 1.3506 8 8 3.2181 -0.0671 2.1483 9 7 5.3596 -0.1698 1.5779 10 6 6.3966 -0.7065 0.6860 11 6 7.4264 -1.4662 1.5281 12 6 7.9588 -0.5452 2.6283 13 6 6.8069 -0.1201 3.5418 14 1 6.3406 -1.0045 3.9757 15 6 7.3456 0.7741 4.6605 16 7 8.2469 -0.0027 5.5152 17 6 8.8526 0.5915 6.5900 18 1 8.6663 1.6328 6.8073 19 6 9.7062 -0.1447 7.4003 20 7 9.9336 -1.4137 7.1351 21 14 10.5330 0.6660 8.8660 22 1 9.4967 1.1711 9.8021 23 1 11.3879 -0.3275 9.5641 24 1 11.3712 1.7988 8.3975 25 6 5.7701 0.6549 2.7225 26 6 4.1459 -2.6123 0.1777 27 6 3.4322 -3.3451 1.3156 28 6 3.8555 -3.3212 -1.1467 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.6984 -2.0058 -0.0708 33 1 5.3132 -0.6834 -1.1644 34 1 3.7647 -0.8622 -2.0236 35 1 4.0797 0.5948 -1.0510 36 1 6.8870 0.1131 0.1608 37 1 5.9422 -1.3855 -0.0356 38 1 8.2510 -1.7873 0.8918 39 1 6.9543 -2.3383 1.9805 40 1 8.4088 0.3386 2.1760 41 1 8.7098 -1.0757 3.2138 42 1 7.8900 1.6121 4.2254 43 1 6.5145 1.1509 5.2565 44 1 8.4139 -0.9381 5.3203 45 1 10.5298 -1.9282 7.7015 46 1 4.9024 0.8741 3.3447 47 1 6.2094 1.5855 2.3635 48 1 5.2201 -2.6133 0.3624 49 1 2.3580 -3.3442 1.1309 50 1 3.7914 -4.3728 1.3676 51 1 3.6390 -2.8401 2.2591 52 1 2.7928 -3.2420 -1.3758 53 1 4.4347 -2.8544 -1.9433 54 1 4.1321 -4.3723 -1.0644 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713245550.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:20 Heat of formation + Delta-G solvation = -77.692079 kcal Electronic energy + Delta-G solvation = -32256.221266 eV Core-core repulsion = 28227.608688 eV Total energy + Delta-G solvation = -4028.612578 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.41067 -40.31165 -38.77117 -38.02435 -36.63350 -34.56350 -33.94431 -32.98969 -32.22454 -31.38603 -29.81240 -28.28799 -27.18731 -26.80926 -25.17024 -24.45395 -23.14579 -22.19337 -21.65682 -21.10478 -20.05190 -19.22193 -18.13564 -17.66040 -17.45975 -16.75913 -16.34621 -16.14122 -16.05585 -15.74020 -15.67534 -15.49729 -15.11193 -15.07448 -14.82772 -14.66083 -14.47325 -14.03349 -13.75715 -13.71402 -13.61725 -13.47413 -13.32052 -13.19764 -13.08336 -12.89585 -12.80564 -12.77072 -12.58412 -12.24183 -12.21049 -12.15551 -11.97926 -11.80935 -11.76547 -11.68863 -11.44910 -11.29674 -10.94845 -10.80571 -10.69777 -10.04462 -9.64630 -9.03058 -7.97611 -5.26670 1.45036 1.48523 1.54568 1.56610 1.65787 2.00531 2.31517 2.54311 3.33418 3.35565 3.46281 3.73244 3.74042 3.78109 3.85046 3.96821 4.00507 4.10020 4.21506 4.30659 4.33419 4.37683 4.43398 4.47087 4.50745 4.61283 4.65043 4.68301 4.73421 4.75564 4.78900 4.81899 4.86368 4.88124 4.93739 5.01190 5.04836 5.11529 5.16020 5.20301 5.24026 5.31599 5.37698 5.41705 5.44912 5.47136 5.48141 5.53471 6.24390 6.41372 6.59000 7.15132 7.30945 7.36229 8.04801 8.30770 9.25723 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.019003 B = 0.002651 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.096951 B =10561.352272 C =11103.717979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.508 3.492 3 O -0.586 6.586 4 N -0.700 5.700 5 C 0.168 3.832 6 C -0.167 4.167 7 C 0.511 3.489 8 O -0.577 6.577 9 N -0.605 5.605 10 C 0.082 3.918 11 C -0.128 4.128 12 C -0.106 4.106 13 C -0.089 4.089 14 H 0.051 0.949 15 C 0.159 3.841 16 N -0.740 5.740 17 C -0.251 4.251 18 H 0.072 0.928 19 C -0.073 4.073 20 N -0.968 5.968 21 Si 0.975 3.025 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.276 1.276 25 C 0.130 3.870 26 C -0.105 4.105 27 C -0.150 4.150 28 C -0.144 4.144 29 H 0.106 0.894 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.417 0.583 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.045 0.955 36 H 0.086 0.914 37 H 0.129 0.871 38 H 0.106 0.894 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.050 0.950 42 H 0.027 0.973 43 H 0.008 0.992 44 H 0.376 0.624 45 H 0.253 0.747 46 H 0.062 0.938 47 H 0.076 0.924 48 H 0.104 0.896 49 H 0.068 0.932 50 H 0.081 0.919 51 H 0.021 0.979 52 H 0.066 0.934 53 H 0.076 0.924 54 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.904 -6.879 -25.971 31.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.297 3.703 3 O -0.466 6.466 4 N -0.356 5.356 5 C 0.078 3.922 6 C -0.225 4.225 7 C 0.299 3.701 8 O -0.456 6.456 9 N -0.338 5.338 10 C -0.039 4.039 11 C -0.166 4.166 12 C -0.144 4.144 13 C -0.109 4.109 14 H 0.069 0.931 15 C 0.032 3.968 16 N -0.383 5.383 17 C -0.382 4.382 18 H 0.090 0.910 19 C -0.265 4.265 20 N -0.618 5.618 21 Si 0.804 3.196 22 H -0.207 1.207 23 H -0.218 1.218 24 H -0.202 1.202 25 C 0.006 3.994 26 C -0.123 4.123 27 C -0.208 4.208 28 C -0.201 4.201 29 H 0.124 0.876 30 H 0.104 0.896 31 H 0.125 0.875 32 H 0.256 0.744 33 H 0.120 0.880 34 H 0.110 0.890 35 H 0.064 0.936 36 H 0.104 0.896 37 H 0.147 0.853 38 H 0.124 0.876 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.068 0.932 42 H 0.045 0.955 43 H 0.026 0.974 44 H 0.208 0.792 45 H 0.061 0.939 46 H 0.080 0.920 47 H 0.094 0.906 48 H 0.122 0.878 49 H 0.087 0.913 50 H 0.100 0.900 51 H 0.040 0.960 52 H 0.085 0.915 53 H 0.095 0.905 54 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.914 -5.808 -25.441 30.566 hybrid contribution 0.377 0.087 1.736 1.778 sum -15.537 -5.721 -23.706 28.915 Atomic orbital electron populations 1.21833 0.88729 1.06189 1.05392 1.21451 0.92107 0.83110 0.73621 1.90678 1.71726 1.33319 1.50869 1.45882 1.05438 1.09440 1.74796 1.20311 0.82686 0.96978 0.92262 1.22591 1.02947 1.00759 0.96154 1.21398 0.81817 0.78900 0.87977 1.90636 1.51741 1.54304 1.48938 1.48013 1.06049 1.51444 1.28258 1.22741 0.88870 0.99601 0.92649 1.21952 0.99368 0.97867 0.97414 1.21449 0.96361 1.00102 0.96485 1.21437 0.96275 0.97950 0.95205 0.93057 1.20698 0.91683 0.93769 0.90666 1.42481 1.53607 1.11097 1.31096 1.19594 1.19866 0.95160 1.03622 0.91001 1.25568 1.01730 0.96615 1.02605 1.69807 1.41854 1.08326 1.41816 0.85193 0.78084 0.77195 0.79166 1.20703 1.21767 1.20201 1.21316 0.97120 0.93357 0.87593 1.21750 1.02047 0.89813 0.98726 1.21869 1.01280 1.01077 0.96525 1.21907 1.02974 1.01020 0.94178 0.87558 0.89602 0.87536 0.74371 0.88031 0.88974 0.93580 0.89602 0.85347 0.87601 0.91993 0.91320 0.93164 0.95530 0.97425 0.79191 0.93861 0.91991 0.90619 0.87836 0.91335 0.90049 0.95965 0.91495 0.90546 0.90432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 10.39 71.23 0.74 -1.44 16 2 C 0.51 11.67 6.59 87.66 0.58 12.25 16 3 O -0.59 -19.69 14.06 14.56 0.20 -19.49 16 4 N -0.70 -12.15 4.26 -426.32 -1.82 -13.96 16 5 C 0.17 3.18 0.19 2.86 0.00 3.18 16 6 C -0.17 -2.68 6.72 71.98 0.48 -2.19 16 7 C 0.51 15.06 4.64 87.66 0.41 15.47 16 8 O -0.58 -22.54 14.25 14.56 0.21 -22.33 16 9 N -0.61 -16.46 2.96 -818.91 -2.42 -18.88 16 10 C 0.08 1.50 4.11 86.36 0.35 1.86 16 11 C -0.13 -2.64 5.94 30.67 0.18 -2.46 16 12 C -0.11 -3.18 5.05 30.62 0.15 -3.03 16 13 C -0.09 -3.14 2.37 -10.71 -0.03 -3.16 16 14 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 15 C 0.16 6.91 5.65 86.38 0.49 7.40 16 16 N -0.74 -39.42 5.32 -343.44 -1.83 -41.25 16 17 C -0.25 -14.61 9.99 84.04 0.84 -13.77 16 18 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 19 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 20 N -0.97 -60.08 13.06 21.65 0.28 -59.80 16 21 Si 0.98 47.24 29.55 68.60 2.03 49.27 16 22 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 23 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 24 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 25 C 0.13 4.23 5.73 86.36 0.49 4.73 16 26 C -0.10 -1.32 1.94 -10.79 -0.02 -1.34 16 27 C -0.15 -2.30 8.78 71.98 0.63 -1.67 16 28 C -0.14 -0.82 8.48 71.98 0.61 -0.21 16 29 H 0.11 0.67 7.92 -2.39 -0.02 0.65 16 30 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.42 4.28 6.02 -92.71 -0.56 3.72 16 33 H 0.10 1.14 4.84 -2.39 -0.01 1.13 16 34 H 0.09 1.05 7.28 -2.38 -0.02 1.04 16 35 H 0.05 1.10 6.67 -2.39 -0.02 1.08 16 36 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.13 1.61 2.39 -2.39 -0.01 1.60 16 38 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.06 1.36 8.11 -2.39 -0.02 1.34 16 40 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 41 H 0.05 1.81 7.16 -2.39 -0.02 1.79 16 42 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 44 H 0.38 20.95 6.86 -92.71 -0.64 20.31 16 45 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 46 H 0.06 2.37 7.00 -2.39 -0.02 2.35 16 47 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 48 H 0.10 1.27 4.97 -2.39 -0.01 1.26 16 49 H 0.07 0.85 6.60 -2.39 -0.02 0.83 16 50 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 51 H 0.02 0.51 7.41 -2.39 -0.02 0.49 16 52 H 0.07 0.28 7.06 -2.39 -0.02 0.26 16 53 H 0.08 0.30 6.95 -2.39 -0.02 0.28 16 54 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 Total: -1.00 -84.58 399.77 2.76 -81.82 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: -0.28 Total: 32.84 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: 6.39 Total: 11.78 kcal Atomic # 7 Polarization: -128.11 SS G_CDS: -5.78 Total: -133.89 kcal Atomic # 8 Polarization: -42.23 SS G_CDS: 0.41 Total: -41.82 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal Total: -84.58 2.76 -81.82 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713245550.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.130 kcal (2) G-P(sol) polarization free energy of solvation -84.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds